2024-04-26 21:32:57, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_041434764 3038 bp mRNA linear PLN 15-SEP-2021 DEFINITION Suillus discolor argonaute-like protein (F5147DRAFT_662159), mRNA. ACCESSION XM_041434764 VERSION XM_041434764.1 DBLINK BioProject: PRJNA727289 BioSample: SAMN12812516 KEYWORDS RefSeq. SOURCE Suillus discolor ORGANISM Suillus discolor Eukaryota; Fungi; Dikarya; Basidiomycota; Agaricomycotina; Agaricomycetes; Agaricomycetidae; Boletales; Suillineae; Suillaceae; Suillus. REFERENCE 1 (bases 1 to 3038) AUTHORS Lofgren,L.A., Nguyen,N.H., Vilgalys,R., Ruytinx,J., Liao,H.L., Branco,S., Kuo,A., LaButti,K., Lipzen,A., Andreopoulos,W., Pangilinan,J., Riley,R., Hundley,H., Na,H., Barry,K., Grigoriev,I.V., Stajich,J.E. and Kennedy,P.G. TITLE Comparative genomics reveals dynamic genome evolution in host specialist ectomycorrhizal fungi JOURNAL New Phytol (2020) In press PUBMED 33355923 REMARK Publication Status: Available-Online prior to print REFERENCE 2 (bases 1 to 3038) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (15-SEP-2021) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (bases 1 to 3038) AUTHORS Kuo,A., Lofgren,L.A., Vilgalys,R., Nguyen,N.H., Ruytinx,J., Liao,H.-L., Branco,S., LaButti,K., Lipzen,A., Andreopoulos,W., Pangilinan,J., Riley,R., Hundley,H., Na,H., Grigoriev,I., Barry,K., Stajich,J.E. and Kennedy,P.G. CONSRTM DOE Joint Genome Institute TITLE Direct Submission JOURNAL Submitted (22-APR-2020) DOE Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598-1698, USA COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. This record is derived from an annotated genomic sequence (NW_024541248). ##Metadata-START## Organism Display Name :: Suillus discolor FC423 v1.0 GOLD Stamp ID :: Gp0305074 ##Metadata-END## FEATURES Location/Qualifiers source 1..3038 /organism="Suillus discolor" /mol_type="mRNA" /strain="FC423" /db_xref="taxon:1912936" /chromosome="Unknown" gene 1..3038 /locus_tag="F5147DRAFT_662159" /db_xref="GeneID:64697023" CDS 48..2849 /locus_tag="F5147DRAFT_662159" /codon_start=1 /product="argonaute-like protein" /protein_id="XP_041299871.1" /db_xref="GeneID:64697023" /db_xref="InterPro:IPR003100" /db_xref="InterPro:IPR003165" /db_xref="InterPro:IPR014811" /db_xref="JGIDB:Suidis1_662159" /translation="
MPPKAAPGQPRGGGGGGGGGGGGVRGGRGGGRGGPRGGPPPRGGPAGGRAVHTPTGPAALPGSHVQAVGVKRPGYGTAGRAVTVFSNFFKISLPESVIHHYDVISPDEKVLPARLNMDLIHHLQTIDAVDVFTPRAVYDGRKNLFAPRELPFGPQNSQEFDVCLSDDPNRRSPGENTGGRGPKVYKIRLTKVAQINPEVLQRFILGQQSHDNSVLTALTALNVVVRMEPTMKYPFNVRSFFTDRETKDIGSGLVLWRGYFQSVRPAIGQLLVNVDISTGTMYKSGALMDVCLEFLGRPGQHALLSPRSGLPDRERIRLQRFISGIRVKTTYAGENKTPRVVKKLSSAGAADLSFTLRDGTSRTVAQYFQTILNRPLRFPNNLCIEVGSGALIPVELCTIPPGQIMRKQVPPEKTKDVLEFATKRPEARLASITNGLSVLQYGQSEYVRQFGMHVEDTTGPLTVMARVLQPPKLKYGPGSAQPTITPSNGAWNMIDKRFFRPAAIDRWIVVVYERQQRFNPQAAQDMIDGMLRSFRDVGIRITDDKPMVTWQNGQGRIADQLRAAGTECFQRTKQRPQLIVVVLPENGNDIYTAVKHFGDITVGVATQCLKSQKCFRAKPQYYANVCLKVNVKLGGINTIPDPQSVSVLTDPRNPTIVMGADVIHPAPGSDGRPSFTALVGNVDSDTAKYIATSRVQASRVEIIEDLQDMAKHVLSMYMKYRQFAEKKTGNLAPTRLIFYRDGVSEGQFKQVLDSELKAIKDACAELKINPKITIIVVAKRHHVRFFPSGSGSNEQDKSGNCLAGTVVDQVVAHPTEFDWYLQSHGGLLGTSRPAHYNVLYDENEFSADGLQSLSFALCHVYARSTRSVSIPAPVYYADIVCSRAKNHYDPQGNVDFSDSATQLDTAQAEGALEAYKRGFKPLHANMASLMYFS"
misc_feature 462..722 /locus_tag="F5147DRAFT_662159" /note="N-terminal domain of argonaute; Region: ArgoN; pfam16486" /db_xref="CDD:435368" misc_feature 759..896 /locus_tag="F5147DRAFT_662159" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:430160" misc_feature 897..1244 /locus_tag="F5147DRAFT_662159" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212" misc_feature order(1068..1070,1107..1109,1137..1139,1149..1151, 1203..1205,1215..1217,1221..1223) /locus_tag="F5147DRAFT_662159" /note="nucleic acid-binding interface [nucleotide binding]; other site" /db_xref="CDD:239212" misc_feature 1380..2711 /locus_tag="F5147DRAFT_662159" /note="PIWI domain, Argonaute-like subfamily. Argonaute is the central component of the RNA-induced silencing complex (RISC) and related complexes. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the...; Region: Piwi_ago-like; cd04657" /db_xref="CDD:240015" misc_feature order(1818..1820,1830..1832,1866..1877,1884..1886, 1908..1910,1917..1919,1929..1931,1941..1943) /locus_tag="F5147DRAFT_662159" /note="5' RNA guide strand anchoring site [active]" /db_xref="CDD:240015" misc_feature order(2028..2030,2034..2036,2268..2270,2679..2681) /locus_tag="F5147DRAFT_662159" /note="active site" /db_xref="CDD:240015" ORIGIN
ctttattgtttaattatcagtttccctcttttacttgtacttcaatcatgccacccaaagcagctcctggtcaacctcgtggaggcggtggaggtggtggaggcggcggcggcggcgtcagaggtggtcgtggcggtggtcgcggcggccctcgcggtggaccacctcctcgcggcggcccagctgggggaagagcagttcatactcccactggtcccgccgctctgcctggaagccatgttcaggccgtaggggtgaaacgacctggatatggaacggcaggcagagcagtgacagtattctccaactttttcaagataagtctcccggaaagcgttatccatcactacgacgtgatctcacctgatgagaaggtccttccggcgcgtctaaacatggacttgatccatcaccttcaaactattgatgctgtcgacgtctttactccccgggccgtttacgatggccgaaagaacctcttcgcccccagggaactgcctttcggtccccagaacagccaagagtttgatgtatgcctctccgatgaccccaatcgcagaagcccaggggagaacacggggggccgtggtcctaaggtgtacaagatcagactgacgaaagtcgcccaaatcaaccccgaagtcctacaacgctttatccttggacagcagtcacatgacaacagtgttttgaccgccttgacggcattgaatgttgtcgttcgtatggaaccgacaatgaagtatccctttaatgttcggtctttcttcaccgaccgggagactaaggatatcggttccggccttgttttatggcgtggatattttcaatcagtgaggcccgcaatcggacagctcctggtcaacgttgatatctcgactggaacgatgtataagtctggagcactgatggatgtctgtctcgagttcttaggtagacctgggcaacacgcgttgctcagcccgcgaagcggtttgcccgatcgtgagcgaatccgtttgcaacgttttatttcaggcatccgagtcaaaacaacatacgccggggaaaacaaaacccctcgcgtcgtcaagaaattgagcagtgcaggcgctgcagatttaagtttcaccttgcgggatggaactagtaggaccgtggctcagtatttccaaacgatcctgaaccgtcctctgaggttcccgaacaatctttgcattgaggttggcagtggtgccttgattcctgtggaactatgcacgattccaccaggtcaaatcatgcggaagcaggttccacctgagaaaacaaaggacgttctggaattcgctacaaagcgacctgaagcccgcctcgctagtattacaaacggtctttcggtccttcaatacggtcagtcggaatacgtgcgccagttcggcatgcacgtcgaagatactactggaccacttaccgtaatggcgcgggtcttgcaaccgccgaaattgaagtacggcccaggtagtgcgcagccgaccattacaccaagtaatggcgcgtggaatatgatcgataaacgattcttcagacctgcagctattgacaggtggatcgttgtggtttatgagaggcagcagcggtttaacccacaggctgcacaagacatgatcgatggcatgctaaggagtttcagagacgttggtatccgtatcaccgacgataagccgatggtaacctggcaaaacggtcaaggccggattgcggaccaactgcgtgccgctggcaccgagtgtttccaaaggacaaaacagcgcccacagctcatcgtcgtagttcttcccgagaacggcaatgacatttacactgcagttaaacattttggggacattacagtcggtgtcgcaacccaatgcctgaagagtcagaaatgcttccgtgcaaaaccgcaatattacgcgaacgtctgccttaaggtcaacgttaagctgggtggtatcaacactattccagatccccagtcggtctcggttcttaccgatcctcgtaaccccaccatcgtcatgggtgccgacgtgattcatcctgcgcctggctctgatggccgtccttcattcacggcactcgtcggcaatgttgattctgataccgcgaaatacatcgctacaagccgtgttcaagcctctcgggttgagatcatcgaagatctccaggacatggcaaagcacgtcctgagtatgtacatgaagtatcgccagttcgcggagaagaagacggggaatcttgcccctacacgtctcatcttttacagagatggtgtttctgaaggtcaattcaagcaagttctcgattctgaacttaaggcgatcaaagacgcttgcgcggagttgaagatcaacccaaagatcaccattatcgtggttgcgaaacgtcaccacgttcgcttcttcccatctggctcagggtcgaatgaacaggacaagagcggcaactgcctcgcaggcactgtcgtcgaccaggttgttgcccaccccacggagttcgactggtacctgcagagccatggcggtctgctaggtacgagtcgccccgcgcactacaacgtgctctacgatgagaacgaattcagcgccgacggtctacaatctctttccttcgctttatgccatgtatatgcacggtcaactcgctctgtttcgatccccgcccctgtatactatgcagatattgtctgctcgcgcgcaaagaatcactacgaccctcaagggaatgttgatttctctgattctgcaactcagctcgacacagcccaggctgagggcgccttggaggcgtacaaacgtggattcaagcctttacatgccaacatggcaagtttgatgtacttctcttgaacactgctgctttacctacttaatcacttcgaagcaaataacggagtcttcttttcttttctgtggccgtgtatgatttagttcctctaactatgtagtagtgtctcatgataacctcacctctgtaaaaaatacgtacgttgcacgaataccactgggacccgcattagggggacctgtattgcttga
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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