2024-03-30 00:04:09, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_041426764 4837 bp mRNA linear VRT 05-MAY-2021 DEFINITION PREDICTED: Onychostruthus taczanowskii NRDE-2, necessary for RNA interference, domain containing (NRDE2), transcript variant X1, mRNA. ACCESSION XM_041426764 VERSION XM_041426764.1 DBLINK BioProject: PRJNA703052 KEYWORDS RefSeq. SOURCE Onychostruthus taczanowskii (white-rumped snowfinch) ORGANISM Onychostruthus taczanowskii Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Passeriformes; Passeroidea; Passeridae; Onychostruthus. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_024496525.1) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Onychostruthus taczanowskii Annotation Release 100 Annotation Version :: 100 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.6 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..4837 /organism="Onychostruthus taczanowskii" /mol_type="mRNA" /isolate="IOZ18803" /db_xref="taxon:356909" /chromosome="Unknown" /sex="pooled male and female" /tissue_type="blood" /altitude="4200 m" gene 1..4837 /gene="NRDE2" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 8 ESTs, 5 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 9 samples with support for all annotated introns" /db_xref="GeneID:121347602" CDS 148..4164 /gene="NRDE2" /codon_start=1 /product="nuclear exosome regulator NRDE2 isoform X1" /protein_id="XP_041282698.1" /db_xref="GeneID:121347602" /translation="
MDAIRHAGDSPVRRPRCRRRFVPVASLRALTQAARVAALQALTDCRQRPPGLSQPSNLSHSRAFQPPETPLGPSFPDSFVRDEGGGKDGLALETASRLFPQQFSAPVPQCGGGGRTVGGGPQKAARPQRPHRPASLPSAAILGLGGRTTAPSALGAILPPAARAGGGGRDMALFPAFAGAAQPGEPPAGSSEGSTRELDWLSNPSFSAEDALLLHQRTTEAANLIPEKSPLLRTSSRSELSEESDTDESLKQTSKKRKKKKKKHHHNKKTKKKTKGDSSSSESEVDTKHSKDKGSGKSSEKEAATNVGKKASGVTSSRSIWLDDIQAPRAETFRIDKKPDPANWAYKSLYRGDIARYKRKGESCLGIDAKKQCITWDSSASKRKQAQSRPERYFTKNNVKMLNTDGILVCNKNSPSDPPAFIPVSQVETDDSSDTTEVNPLGIYDPSTTVWLQGKGCKSADNESVNTQQTSQEPGMNMNSILMTKVEEYNKKVRENPRDINAWMEFISFQDELMRGPSPYASKGEQELRRKSLKLILEKKLAILERAIESNPSNVDLKLARLKLCTEFWEPPAVIKEWQKLIFLHPNNPEMWKKYLLFCQSQFTTFSVSKINSLYGKCFTTLAAVQDGSMVSHPLLPGTEEAMLAIFIQQCHFLRQAGHSEKAVSLFQALIDFTFFKPDSVKDLPTRGQVEFFEPFWDSGEPRIGEKGARGWKAWMHQQEKGGWVVLKSDDEDEEDLDEDQEIKDKTLPKWHIWLDVEYSREARHWLPWRPDKTKKETEEDCEDPERQVLFDDLGPSLIRLSNPKLQHQLLYSFLQFLGVPCTSKLFPSGLYTAMDENNIFDSVLYDDKPLTSVDFPLSGFNSIGHMDTMSRGRRQIGHYKEGEEFIQNVFHVLSQILTGKEKSNLAICWLQYEISKVIQCLQAKKKKKLKAQGRKSKKLAKNFLKAPDNRNNLSLWKLYAYLEWLLGNTDDSRKVFDTALCTAGAGGLKSAQLCSLSLLYAQLEVELLESMEGAVTSRAVHILTKLTENGPYVPYSGQVLPVNVLKARKTYEHALQDCLSKTAVSDQDQGNDTDQLVSLVGCYALFQYLTVGIDAAVLIYTQASEKLEVSGSQKSENTGENFGILNFPTALEAVTLLHTNLLRFHMKISVYPLNPLREALTEALKRYPSNQSLWRSYIHIQRKSHSASKARRFFDSVTRSTNSLEPWLFAIQAEQMRKKLTEKVQRADVGEIHCTIPETGLTNRIVALFEHAVQSENGTHCPLLWRMYLNFMASLGKKEKSKGLFYKALQNCPWAKVLYMDAVEYFPEDLQETLDLMTEKELRVRVPMEELDLLLEI"
misc_feature <163..717 /gene="NRDE2" /note="large tegument protein UL36; Provisional; Region: PHA03247" /db_xref="CDD:223021" misc_feature 1141..1419 /gene="NRDE2" /note="MTR4-interacting domain (MID) found in nuclear exosome regulator NRDE2 and similar proteins; Region: NRDE2_MID; cd22200" /db_xref="CDD:412062" misc_feature order(1141..1167,1174..1179,1189..1194,1198..1200, 1204..1248,1255..1263,1267..1275,1297..1305,1315..1320, 1324..1329,1336..1356,1375..1383,1396..1419) /gene="NRDE2" /note="MTR4 binding site [polypeptide binding]; other site" /db_xref="CDD:412062" misc_feature 1609..2604 /gene="NRDE2" /note="necessary for RNA interference; Region: NRDE-2; pfam08424" /db_xref="CDD:429988" ORIGIN
caagaatcaggcactggctagaggaaaaaaaagggaaatactgtttcagacaatacataattcagaagtggaacatcctgttcaagaaagcacaaagtgaaaagcataaacaattctttttgcagttcctttgtggagggcaggctcatggatgccatcagacacgcgggtgactccccggtcaggaggccaaggtgcaggaggcgatttgtccccgtggcctcgctgagggcgctgacacaggctgccagggtagcggctctccaggcactcactgactgccgacagaggccgcccggcctctcacagcccagcaatctttcacacagccgagcattccagcctccggagacaccgctcgggccttccttcccggacagcttcgtgagggatgagggcggtgggaaggacgggctggctctggaaactgcctcccgccttttcccgcagcagttctcagctccagtcccgcagtgcggcggaggagggcgcacggtaggcggaggcccacagaaagccgccaggccgcagcgacctcaccgcccagcctccctgccctcagccgccatcttggggctgggcggaagaactaccgctcccagcgcgctcggcgccatcttgccgccggcagcgcgggcggggggcggcggccgagacatggcgctgttcccggccttcgccggcgccgcccagcccggggagccccccgccggcagctccgagggctccacgagagagttagactggcttagtaacccaagcttctctgcagaagatgcactgttactgcaccagcgcactacagaagctgccaatctcattcctgaaaaatcaccattattaaggacttcctcaagatctgagttgtcagaggagagtgatacagatgagagtctgaaacagacgagtaagaaaaggaaaaagaaaaagaagaagcatcaccacaataagaagacaaaaaagaaaaccaaaggggattccagtagcagcgaatcagaggtggacactaagcacagcaaggacaaaggaagtggcaaaagtagtgaaaaggaagcagcaacaaatgtaggtaagaaagcatcaggtgttaccagcagtcgctctatttggcttgatgatatccaggcccccagagcagaaaccttccggatagacaagaaaccagaccctgcaaactgggcctacaagtccttgtatcgtggggacatagcaaggtataaaaggaaaggagagtcctgtcttggcatagatgcaaagaaacagtgcataacttgggacagttctgcatcaaaaaggaagcaagcacagagtcgacctgagcgctactttacgaagaacaatgtgaagatgctgaacacagatgggattcttgtttgtaataaaaattctccatctgatccacctgcttttataccagtttcccaagtggaaactgatgattcttctgacacaacagaagtaaatcctcttgggatttatgatccatcaaccacagtgtggctacaaggaaaagggtgcaagagtgcagacaatgagtctgtaaatacacagcaaacaagtcaagagcctgggatgaacatgaactccattctaatgacaaaagtggaagaatataacaagaaagttagagaaaacccaagagatattaatgcttggatggaatttatttcctttcaggatgaattaatgagaggacctagcccttatgccagtaagggagagcaggaattaaggagaaaatcactcaagttaatcttggaaaagaaactggccattttagagagggcaattgaaagcaatccaagtaatgttgatctgaaacttgccaggctgaagctttgcacggaattctgggaaccaccagctgtgatcaaagaatggcagaagctaatttttttacatccaaataatccagagatgtggaagaaataccttctgttctgtcaaagtcagttcactaccttttctgtttcaaagatcaacagtctctatggaaaatgttttacaacattggcagctgttcaggatggcagcatggtatcccatcctctgctgcctggcactgaagaagctatgctggctatatttattcagcaatgccactttctgagacaggctggccattctgagaaagcagtgtctttgtttcaggctctcattgacttcaccttctttaaacctgacagtgtaaaagatctgccaacaagaggacaggtggaattctttgaacccttttgggatagtggagaaccacgaattggagaaaaaggagcaagaggctggaaagcatggatgcaccaacaagaaaagggtggctgggttgttcttaagtctgatgatgaggatgaggaagacctagatgaagatcaagaaataaaagataaaactcttcccaagtggcatatttggttggatgttgaatattcccgggaggcaaggcattggttaccttggaggccagacaaaaccaaaaaggaaactgaagaagattgtgaagatccagaaagacaggtgttatttgatgatcttggaccatctttaatccgtctttctaatccaaagcttcaacatcaactattgtactctttcttgcaattcctgggagttccatgtacaagtaaactctttccttctggtctctatactgccatggatgaaaataacatctttgacagtgtgctttatgatgataaacctctgacttccgttgattttccactttctggattcaacagtattggtcatatggatacaatgtcacgaggcagacgtcagataggccactacaaagaaggagaggagttcatacagaatgtcttccatgttctgtcccagatacttacaggaaaggaaaaatctaacctggccatttgttggctacagtatgaaatatccaaggtaattcagtgtctccaagcaaaaaagaaaaagaagctaaaagcacaagggaggaagagtaaaaagttggccaagaattttcttaaagcacctgacaaccggaacaacctttctctctggaaactctatgcctacctagagtggctgcttggtaacacagatgattccaggaaggtgtttgacacagctctttgcacagcaggggcaggaggattgaagagtgctcagctctgcagcctcagcctgctgtacgctcagctggaggtggagctgctggaaagtatggaaggagctgtcacgtcacgtgctgttcatatattgaccaaactgactgaaaatggaccatatgtgccctacagtggacaagtgttgcctgtgaatgtcttgaaagctcgtaaaacgtatgagcatgcactgcaagattgcttaagtaaaacagcagtttctgatcaggatcagggcaatgatactgatcagctggttagcctggttggttgttatgcactgtttcagtatttgactgttgggattgatgctgcagtattaatatatacgcaggcttcagaaaaacttgaagtttctggttcacagaaaagtgaaaatactggagagaattttggcattctaaattttcccactgctcttgaagctgtcacactgctgcatacaaatttactgagattccacatgaaaattagtgtttatcctttgaatccccttcgagaggcactgacagaggctctgaaacggtatcctagcaaccagtctctttggaggtcgtacatccacatccaaaggaagtctcacagtgccagcaaagcacgaagattttttgatagtgtcacaaggtctactaactctttagagccgtggctgtttgcaatccaagcagagcagatgagaaaaaaactcacagagaaggtccagagggcagatgttggtgaaatacattgtactattcctgaaactggattaacaaatcggattgtagctctgtttgaacatgcagttcagagtgaaaatggtacccattgtccactgctatggagaatgtatttgaacttcatggcttcattaggaaagaaagaaaaaagtaaaggattgttttataaagcccttcaaaactgtccttgggcaaaggtgctctatatggatgcagtagagtatttccctgaggatctgcaggagacgctcgatctaatgactgaaaaagaactgagagtgcgggtgcctatggaagagctggatctgctactggagatttaaaagactgcagcagagtggaggaagtgcagaagctgcttccaaagctaacagttagatccatctcttttcatgcaggagctctgttgggacttgggtactatgtacttgacatttttttgttgttaatattttatataaattcctatcaaaatggagttctactacctgcaagtattctggaatcaagcactgcattttgcccacaataatggatccatttctctgaagtactgcgggatcccacagaaggataggctctttaatagcctcctgttggaagctgccagcatttcttactctgttgtttgaaattacattccctagggttcagtagaggttcagtacatgccagctatggcttgatgagcagcacaggaaataaacatctgcccaatggatgctgcactgtcctccagctggcagacttcagtaatttccttcagcttggtatggctgtgcatatgcaactgccaagtcaaacagccattacacctgtacatatactgtaaaagctaaatttttgtttgagcaggcacctattttggtatgttttgacagatgaccgcttaaatgtaaatctttctgaaaaatatacctgaatatttgagaattcaaaagtaacttttttttttttttattaatttaatagaactgagtatattaaaaatgaaaa
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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