2024-03-29 11:17:40, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_041420801 11537 bp mRNA linear VRT 05-MAY-2021 DEFINITION PREDICTED: Onychostruthus taczanowskii argonaute RISC catalytic component 2 (AGO2), transcript variant X2, mRNA. ACCESSION XM_041420801 VERSION XM_041420801.1 DBLINK BioProject: PRJNA703052 KEYWORDS RefSeq. SOURCE Onychostruthus taczanowskii (white-rumped snowfinch) ORGANISM Onychostruthus taczanowskii Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Passeriformes; Passeroidea; Passeridae; Onychostruthus. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_024504344.1) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Onychostruthus taczanowskii Annotation Release 100 Annotation Version :: 100 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.6 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..11537 /organism="Onychostruthus taczanowskii" /mol_type="mRNA" /isolate="IOZ18803" /db_xref="taxon:356909" /chromosome="Unknown" /sex="pooled male and female" /tissue_type="blood" /altitude="4200 m" gene 1..11537 /gene="AGO2" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 3 ESTs, 34 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 9 samples with support for all annotated introns" /db_xref="GeneID:121344649" CDS 147..2738 /gene="AGO2" /codon_start=1 /product="protein argonaute-2 isoform X2" /protein_id="XP_041276735.1" /db_xref="GeneID:121344649" /translation="
MYPGAPSAGPVLTPPPPLPPPIQGYAFKPPPRPDFGTSGRTIKLQANFFEMDIPKIDIYHYELDIKPEKCPRRVNREIVEHMVQHFKTQIFGDRKPVFDGRKNLYTAMPLPIGRDKVELEVTLPGEGKDRIFKVAIKWMSCVSLQALHDALSGRLPSVPFETIQALDVVMRHLPSMRYTPVGRSFFTASEGCSNPLGGGREVWFGFHQSVRPSLWKMMLNIDVSATAFYKAQPVIEFVCEVLDFKSIEEQQKPLTDSQRVKFTKEIKGLKVEITHCGQMKRKYRVCNVTRRPASHQTFPLQQENGQTVECTVAQYFKDRHKLVLRYPHLPCLQVGQEQKHTYLPLEVCNIVAGQRCIKKLTDNQTSTMIRATARSAPDRQEEISKLMRSASFNTDPYVREFGIMVKDEMTDVTGRVLQPPSILYGGRNKAIATPVQGVWDMRNKQFHTGIEIKVWAIACFAPQRQCTEVHLKSFTEQLRKISRDAGMPIQGQPCFCKYAQGADSVEPMFRHLKNTYTGLQLVVVILPGKTPVYAEVKRVGDTVLGMATQCVQMKNVQRTTPQTLSNLCLKINVKLGGVNNILLPQGRPPVFQQPVIFLGADVTHPPAGDGKKPSIAAVVGSMDAHPNRYCATVRVQQHRQEIIQDLAAMVRELLIQFYKSTRFKPTRIIFYRDGVSEGQFQQVLHHELLAIREACIKLEKDYQPGITFIVVQKRHHTRLFCTDKNERVGKSGNIPAGTTVDTKITHPSEFDFYLCSHAGIQGTSRPSHYHVLWDDNRFSSDELQILTYQLCHTYVRCTRSVSIPAPAYYAHLVAFRARYHLVDKEHDSAEGSHTSGQSNGRDHQALAKAVQVHQDTLRTMYFA"
misc_feature 432..656 /gene="AGO2" /note="N-terminal domain of argonaute; Region: ArgoN; pfam16486" /db_xref="CDD:435368" misc_feature 684..836 /gene="AGO2" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:430160" misc_feature 837..1199 /gene="AGO2" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212" misc_feature order(993..995,1038..1040,1080..1082,1092..1094, 1146..1148,1167..1169,1173..1175) /gene="AGO2" /note="nucleic acid-binding interface [nucleotide binding]; other site" /db_xref="CDD:239212" misc_feature 1332..2609 /gene="AGO2" /note="PIWI domain, Argonaute-like subfamily. Argonaute is the central component of the RNA-induced silencing complex (RISC) and related complexes. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the...; Region: Piwi_ago-like; cd04657" /db_xref="CDD:240015" misc_feature order(1743..1745,1755..1757,1791..1802,1809..1811, 1833..1835,1842..1844,1854..1856,1866..1868) /gene="AGO2" /note="5' RNA guide strand anchoring site [active]" /db_xref="CDD:240015" misc_feature order(1947..1949,1953..1955,2163..2165,2577..2579) /gene="AGO2" /note="active site" /db_xref="CDD:240015" ORIGIN
cccttttcttttccttccccctcccctttccttcctcctcctcctcctccccttcccccgacagcgtagccggggctcgggctcgctccctcccccgtgccctcccctagagctgccgccgcctccgccgccgcacacacggagacatgtacccgggagccccctccgccggacccgtgctcacacctcctcccccattgccaccaccaatacagggatatgcctttaaacctcctcctcgaccagattttggcacttctgggagaacaatcaaactgcaggccaacttctttgaaatggacattcctaaaatagatatctaccattatgaattggatataaagccagaaaaatgtcctagaagagttaacagagaaatagtggagcatatggttcagcactttaaaacccagatttttggggatcgcaagccagtgtttgatggaagaaaaaacctttatacagccatgccacttcccattgggagagataaagtggagctggaggtcacgctgccaggagaaggaaaggacagaatatttaaggtggccatcaagtggatgtcctgtgtgagcttgcaggctttgcatgatgctctctctggccgcctgccgagcgtcccgtttgagaccatccaggccctggatgtggtcatgaggcacttgccttccatgaggtatactcctgtggggagatctttctttacagcatcagaagggtgctcaaatcctttgggtgggggcagagaagtttggtttggcttccatcagtcagtcagaccttcattatggaaaatgatgctaaatattgatgtgtctgcaactgcattttacaaagcacagccagttattgagtttgtctgtgaagttctggacttcaaaagtattgaagaacaacaaaaacctctgacagattcccaaagggtaaagtttaccaaagaaataaaaggtctgaaggtggagataacacactgtggacaaatgaaaaggaagtacagagtgtgcaatgtcaccagacgaccagcaagtcaccaaacattcccacttcagcaggagaatggacaaacagttgaatgcactgtagctcagtattttaaggacaggcataaattggttttacgctaccctcaccttccatgtttacaagttggacaggagcagaaacacacataccttcctctagaggtgtgcaacatagtggcaggacaaagatgcataaagaaactcactgacaatcaaacttccactatgattcgagccactgccagatcagccccggaccggcaggaagagatcagcaaattgatgcggagcgccagtttcaacacagacccttacgtccgagagtttgggatcatggtcaaggatgaaatgacagatgtgactggcagagtccttcagcctccctcaatcctctatggaggcaggaataaagcaattgctacaccagtgcaaggtgtctgggacatgaggaataaacaatttcacactggaattgaaataaaggtttgggcaattgcctgctttgctccccagcgccagtgcactgaagttcatctgaagtccttcacagagcagctgaggaagatttccagggatgctggaatgccaatccaggggcagccctgcttctgtaaatacgcccagggagccgacagcgtggagcccatgttcagacacctcaagaacacttacactgggctgcagcttgtcgtggtcattttgccaggaaaaacaccagtctatgcggaggtgaagcgcgttggcgacacggtgctgggaatggccactcagtgtgtgcagatgaaaaacgtccaaagaacaacaccacaaactctgtccaacctttgcttaaaaataaatgtcaaattaggaggtgtaaataatattctactgccacagggaagaccccctgtattccaacagcctgtcatattccttggtgcagatgtaactcacccaccagctggggatgggaaaaagccttccattgctgcagttgtaggaagcatggatgctcatcccaaccgttactgtgccactgtgcgggtgcagcagcaccgccaggagatcatccaggacttggctgccatggtcagggagctgctgatccagttctacaaatccaccaggttcaaaccaactcgaatcatcttctacagggatggtgtttctgaggggcagttccaacaggtcctccaccacgagctgctggctatcagggaggcttgcattaaactggagaaggattatcagcctggcatcacatttatagtggtgcagaagaggcaccacaccagactcttctgcacggataaaaacgaacgggttggaaaaagtggaaacattccagctggtaccacagtggacacaaaaatcacccacccctcggagttcgacttctacctgtgtagtcatgctgggattcagggaacaagcagaccttctcactaccacgtgctgtgggacgacaatcgcttctcgtcggacgagctgcagatcctcacctaccagctgtgccacacctacgtgcgctgcacgcgctccgtctccatccctgccccggcctactacgctcacctggtggccttcagagccaggtaccatctggtggataaagaacacgatagtgctgaaggaagccacacttctggccagagcaatggcagagaccaccaagcacttgctaaggcagtccaggtgcaccaggacacgctgcgcacgatgtactttgcttgacatgttttaatgttcagcggctcccgacaaggcagagttggattcacaccagaccagctgcacttagaccaacagatgccccaccccagggacagccagcaatgagtgatgcatctttattcctttctttcccatttgcaaggaagccttccgtccagaatttcagacttgatcacaaactgcattcttgtaccaaaccccactgttgtcggaaatgtggtttgccaaaaaaatctctgagctgcttggtataaaacagacccagattttataattaaatcaagagctgcaatctcagggcttagggaagaaaaacaaaaaaaccaaaccaacaactcaacccacaaaacttctcattcagtttgctgttcattgagttgcttttgataatttggaaagatctaattcatactaaggtttgatgagctaaaacgctgtgaatcagcttttagtacaaaggaaagcaaatcatcttttgagtatttatgaagccttgattattctagatgcatttacaaaatttttattttcaaaataagagcgtgacaaattctggtttctaattgtcttataaagattattctcagattattctctgtgtgtctaaggacaaatgtattttctgaagcttcttcttgaatgttttttattgtgctgcattttaaaatgtttttcatagactaaggtgaatttaaaaaaaaaaaaaaaaagagtaaacctgtacctaagcttttaatagctccagttagattggcagaagaaaatgtgccatttaaaaaaatttgtaaagattttttttaaatcatactgacagctaactttaggatttgtcatacaggactgtgacatttactttccaaagtctctaaagaatacgggtctgtggtgatgaatacagtacaatcctttttcactgttgagttaatgtaaattttatatatgtttcacagtattaatgtgatagactagatgctattatttatttttatttactaaggagtgctcattatacttctgttaacatatcaagaatgctttgaacttagaaagtaaaatcctttttgtggggacattactcttcaaatgaaaaaaaaaaaaatatgcaatcgatgtggtgagaggagagagatgcagccagggtctgttgtagcttgggatttgcagaaaggctttttcaatgtgcacacaacacagcaggttttacctctgcggttcagacgcacacaagaccaacatcctacattcattcaagcacaaaacaattgtattttatttatatgttgagtagtggtgaagcaggagctctgctagaggagagtggctcgctggaagttaggcagaagtcagagaatctatgcagtaaagataaaaattaggaaactgaagtttacttagggagggaggtgaagctctcttcattatgcataagatctgtaggaaatgtgagagttttgccattctcttaggagaagcattaattaaaactgctaattatgagacagatgcttctgttagtttgcacactggattcataaaaaccataacacatgtaaaccattgcactaatgacaatgccacgagcaggtttaggagaaaatggaaaaagcccaggaaagttgtttatgctgacttgatcttgtttgtttttccatgggataactgaaataagatgctgagaggcaggttggaaagccttcattctcctccactgatggatttgctttgtcttttcccttttctccgagcagctgctcagtctctttggacacttttacctctggccactgggatgggcaagtagctttaacccatgcagagctctgggccacagagcaggtcagctgcaaccaggtggtgttggataagctagaaaatgcccagcctttgctgcataaagacttttaggtacataattccagtccagatcttcaccttgtagcagtgtgtcagttgtggtgttttgtaggtgaaatgtaaaacctgttaatgaaataatcatatttgtactattctaattgggcgattaggctgctggctcagagtgtcttcttggtcatagttctagaaattcagatttctgtaaatttgaagcaaatcctaggtagcattgtctgtcttgctgtgtgccagcgaggttgtacctacctcccctcaagcacccctaagctgcagatcctccccgtggtgggtgtgttgcacttctctgtgtttccttcagagctttcctatttcagtgaagatattcatttggcagagttttat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gttctgtatcaaacggaatgcagggaatacagttctgtatcaaagggaataatcctttccacagggttctcaggagtgcacaggttttagttgtatttttttccccacattttggatgtgctgtcgaaccatggactttgttatttttcttcctcccttctctgagcacaactaaaccacttgctggaacagctgctctctgctcatcagcagggattgcagatgctgtctgacctgggagcaagcctaggagttgtccccataatacaattttaacttttccagtcattttattggggttttttgagtgtgcttggcaagcatgaatggtgaacaggtcagcaggcaagcttgggagtctctaatcccctggctggtgttgtttgtgtttgctttgttaggttagatttcctgttaggaaaaaaaaaaagtggactcttttctgtatttatcagcttttcctggttttaaagccatgaatagaggaagcttcagtcatgctggtttttgtgaaattgcacatttttgcctgatatgtacttgactcaaagcagatcctgtctgggctttatgggcaccccaaaactcagctgctgggggttggatcagacctctcatgtaccaacgtgacatgcagtgaattttgtttctagatttcaccaaagttagttcaactgtgagctgctcaaacctgttttatagcactgtttctatgctgttaaaaagtaaggatttgacccaaagtctgtcgttcctgatggattttctcatgaaacttaaagactgagcccttcaattgctcatctcatttacaaatgacagcttcataactgcattttacagaaaataagaggaaaaaaaaaacccaaaccattaaaaaccattaaggagtaagctttagatttatgttggaaaatctaattttcaatgaggtgcaatgaggaattacatctggcaaagttctgtgccatcctgaagagtgttaccacttcctttctgtaatttgttggtaaaatttagtagattttttggatctgtgtgtgtccctttctgtgtgtgtgcacacacgtgtgacaggacaggggacagtgtataggctgtctgtaaaagatacaatgacaatatttggctggaaataacaagcacaatttccctggcttttacagtattttattgtacaatcacaaagatttcaacatttagggcaattgataagtaaagacccagccccagatttctgtgcagcggagtggttgacttgatcctgggagggcaagatggaaaacagaatgtattgattaaatctattttttttttttgctttaattatggtacattgcaaaataaactgacttttatctgttaaggttttaatcttctaatagtttcaaaaattcttttaaaattattttttataacataactgaaaaaaaacccaaaaatcaatccagaagcttcatattgtaaatgttccctccaatcaaaatgtttttgtgaccatttaaagttttgttttttggttttctgggtttttttt
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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