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2024-03-29 11:17:40, GGRNA.v2 : RefSeq release 222 (Jan, 2024)

LOCUS       XM_041420801           11537 bp    mRNA    linear   VRT 05-MAY-2021
DEFINITION  PREDICTED: Onychostruthus taczanowskii argonaute RISC catalytic
            component 2 (AGO2), transcript variant X2, mRNA.
ACCESSION   XM_041420801
VERSION     XM_041420801.1
DBLINK      BioProject: PRJNA703052
KEYWORDS    RefSeq.
SOURCE      Onychostruthus taczanowskii (white-rumped snowfinch)
  ORGANISM  Onychostruthus taczanowskii
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Passeriformes; Passeroidea;
            Passeridae; Onychostruthus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_024504344.1) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Onychostruthus taczanowskii
                                           Annotation Release 100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.6
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11537
                     /organism="Onychostruthus taczanowskii"
                     /mol_type="mRNA"
                     /isolate="IOZ18803"
                     /db_xref="taxon:356909"
                     /chromosome="Unknown"
                     /sex="pooled male and female"
                     /tissue_type="blood"
                     /altitude="4200 m"
     gene            1..11537
                     /gene="AGO2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 3 ESTs, 34 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 9 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:121344649"
     CDS             147..2738
                     /gene="AGO2"
                     /codon_start=1
                     /product="protein argonaute-2 isoform X2"
                     /protein_id="XP_041276735.1"
                     /db_xref="GeneID:121344649"
                     /translation="
MYPGAPSAGPVLTPPPPLPPPIQGYAFKPPPRPDFGTSGRTIKLQANFFEMDIPKIDIYHYELDIKPEKCPRRVNREIVEHMVQHFKTQIFGDRKPVFDGRKNLYTAMPLPIGRDKVELEVTLPGEGKDRIFKVAIKWMSCVSLQALHDALSGRLPSVPFETIQALDVVMRHLPSMRYTPVGRSFFTASEGCSNPLGGGREVWFGFHQSVRPSLWKMMLNIDVSATAFYKAQPVIEFVCEVLDFKSIEEQQKPLTDSQRVKFTKEIKGLKVEITHCGQMKRKYRVCNVTRRPASHQTFPLQQENGQTVECTVAQYFKDRHKLVLRYPHLPCLQVGQEQKHTYLPLEVCNIVAGQRCIKKLTDNQTSTMIRATARSAPDRQEEISKLMRSASFNTDPYVREFGIMVKDEMTDVTGRVLQPPSILYGGRNKAIATPVQGVWDMRNKQFHTGIEIKVWAIACFAPQRQCTEVHLKSFTEQLRKISRDAGMPIQGQPCFCKYAQGADSVEPMFRHLKNTYTGLQLVVVILPGKTPVYAEVKRVGDTVLGMATQCVQMKNVQRTTPQTLSNLCLKINVKLGGVNNILLPQGRPPVFQQPVIFLGADVTHPPAGDGKKPSIAAVVGSMDAHPNRYCATVRVQQHRQEIIQDLAAMVRELLIQFYKSTRFKPTRIIFYRDGVSEGQFQQVLHHELLAIREACIKLEKDYQPGITFIVVQKRHHTRLFCTDKNERVGKSGNIPAGTTVDTKITHPSEFDFYLCSHAGIQGTSRPSHYHVLWDDNRFSSDELQILTYQLCHTYVRCTRSVSIPAPAYYAHLVAFRARYHLVDKEHDSAEGSHTSGQSNGRDHQALAKAVQVHQDTLRTMYFA"
     misc_feature    432..656
                     /gene="AGO2"
                     /note="N-terminal domain of argonaute; Region: ArgoN;
                     pfam16486"
                     /db_xref="CDD:435368"
     misc_feature    684..836
                     /gene="AGO2"
                     /note="Argonaute linker 1 domain; Region: ArgoL1;
                     pfam08699"
                     /db_xref="CDD:430160"
     misc_feature    837..1199
                     /gene="AGO2"
                     /note="PAZ domain, argonaute_like subfamily. Argonaute is
                     part of the RNA-induced silencing complex (RISC), and is
                     an endonuclease that plays a key role in the RNA
                     interference pathway. The PAZ domain has been named after
                     the proteins Piwi,Argonaut, and Zwille; Region:
                     PAZ_argonaute_like; cd02846"
                     /db_xref="CDD:239212"
     misc_feature    order(993..995,1038..1040,1080..1082,1092..1094,
                     1146..1148,1167..1169,1173..1175)
                     /gene="AGO2"
                     /note="nucleic acid-binding interface [nucleotide
                     binding]; other site"
                     /db_xref="CDD:239212"
     misc_feature    1332..2609
                     /gene="AGO2"
                     /note="PIWI domain, Argonaute-like subfamily. Argonaute is
                     the central component of the RNA-induced silencing complex
                     (RISC) and related complexes. The PIWI domain is the
                     C-terminal portion of Argonaute and consists of two
                     subdomains, one of which provides the...; Region:
                     Piwi_ago-like; cd04657"
                     /db_xref="CDD:240015"
     misc_feature    order(1743..1745,1755..1757,1791..1802,1809..1811,
                     1833..1835,1842..1844,1854..1856,1866..1868)
                     /gene="AGO2"
                     /note="5' RNA guide strand anchoring site [active]"
                     /db_xref="CDD:240015"
     misc_feature    order(1947..1949,1953..1955,2163..2165,2577..2579)
                     /gene="AGO2"
                     /note="active site"
                     /db_xref="CDD:240015"
ORIGIN      
cccttttcttttccttccccctcccctttccttcctcctcctcctcctccccttcccccgacagcgtagccggggctcgggctcgctccctcccccgtgccctcccctagagctgccgccgcctccgccgccgcacacacggagacatgtacccgggagccccctccgccggacccgtgctcacacctcctcccccattgccaccaccaatacagggatatgcctttaaacctcctcctcgaccagattttggcacttctgggagaacaatcaaactgcaggccaacttctttgaaatggacattcctaaaatagatatctaccattatgaattggatataaagccagaaaaatgtcctagaagagttaacagagaaatagtggagcatatggttcagcactttaaaacccagatttttggggatcgcaagccagtgtttgatggaagaaaaaacctttatacagccatgccacttcccattgggagagataaagtggagctggaggtcacgctgccaggagaaggaaaggacagaatatttaaggtggccatcaagtggatgtcctgtgtgagcttgcaggctttgcatgatgctctctctggccgcctgccgagcgtcccgtttgagaccatccaggccctggatgtggtcatgaggcacttgccttccatgaggtatactcctgtggggagatctttctttacagcatcagaagggtgctcaaatcctttgggtgggggcagagaagtttggtttggcttccatcagtcagtcagaccttcattatggaaaatgatgctaaatattgatgtgtctgcaactgcattttacaaagcacagccagttattgagtttgtctgtgaagttctggacttcaaaagtattgaagaacaacaaaaacctctgacagattcccaaagggtaaagtttaccaaagaaataaaaggtctgaaggtggagataacacactgtggacaaatgaaaaggaagtacagagtgtgcaatgtcaccagacgaccagcaagtcaccaaacattcccacttcagcaggagaatggacaaacagttgaatgcactgtagctcagtattttaaggacaggcataaattggttttacgctaccctcaccttccatgtttacaagttggacaggagcagaaacacacataccttcctctagaggtgtgcaacatagtggcaggacaaagatgcataaagaaactcactgacaatcaaacttccactatgattcgagccactgccagatcagccccggaccggcaggaagagatcagcaaattgatgcggagcgccagtttcaacacagacccttacgtccgagagtttgggatcatggtcaaggatgaaatgacagatgtgactggcagagtccttcagcctccctcaatcctctatggaggcaggaataaagcaattgctacaccagtgcaaggtgtctgggacatgaggaataaacaatttcacactggaattgaaataaaggtttgggcaattgcctgctttgctccccagcgccagtgcactgaagttcatctgaagtccttcacagagcagctgaggaagatttccagggatgctggaatgccaatccaggggcagccctgcttctgtaaatacgcccagggagccgacagcgtggagcccatgttcagacacctcaagaacacttacactgggctgcagcttgtcgtggtcattttgccaggaaaaacaccagtctatgcggaggtgaagcgcgttggcgacacggtgctgggaatggccactcagtgtgtgcagatgaaaaacgtccaaagaacaacaccacaaactctgtccaacctttgcttaaaaataaatgtcaaattaggaggtgtaaataatattctactgccacagggaagaccccctgtattccaacagcctgtcatattccttggtgcagatgtaactcacccaccagctggggatgggaaaaagccttccattgctgcagttgtaggaagcatggatgctcatcccaaccgttactgtgccactgtgcgggtgcagcagcaccgccaggagatcatccaggacttggctgccatggtcagggagctgctgatccagttctacaaatccaccaggttcaaaccaactcgaatcatcttctacagggatggtgtttctgaggggcagttccaacaggtcctccaccacgagctgctggctatcagggaggcttgcattaaactggagaaggattatcagcctggcatcacatttatagtggtgcagaagaggcaccacaccagactcttctgcacggataaaaacgaacgggttggaaaaagtggaaacattccagctggtaccacagtggacacaaaaatcacccacccctcggagttcgacttctacctgtgtagtcatgctgggattcagggaacaagcagaccttctcactaccacgtgctgtgggacgacaatcgcttctcgtcggacgagctgcagatcctcacctaccagctgtgccacacctacgtgcgctgcacgcgctccgtctccatccctgccccggcctactacgctcacctggtggccttcagagccaggtaccatctggtggataaagaacacgatagtgctgaaggaagccacacttctggccagagcaatggcagagaccaccaagcacttgctaaggcagtccaggtgcaccaggacacgctgcgcacgatgtactttgcttgacatgttttaatgttcagcggctcccgacaaggcagagttggattcacaccagaccagctgcacttagaccaacagatgccccaccccagggacagccagcaatgagtgatgcatctttattcctttctttcccatttgcaaggaagccttccgtccagaatttcagacttgatcacaaactgcattcttgtaccaaaccccactgttgtcggaaatgtggtttgccaaaaaaatctctgagctgcttggtataaaacagacccagattttataattaaatcaagagctgcaatctcagggcttagggaagaaaaacaaaaaaaccaaaccaacaactcaacccacaaaacttctcattcagtttgctgttcattgagttgcttttgataatttggaaagatctaattcatactaaggtttgatgagctaaaacgctgtgaatcagcttttagtacaaaggaaagcaaatcatcttttgagtatttatgaagccttgattattctagatgcatttacaaaatttttattttcaaaataagagcgtgacaaattctggtttctaattgtcttataaagattattctcagattattctctgtgtgtctaaggacaaatgtattttctgaagcttcttcttgaatgttttttattgtgctgcattttaaaatgtttttcatagactaaggtgaatttaaaaaaaaaaaaaaaaagagtaaacctgtacctaagcttttaatagctccagttagattggcagaagaaaatgtgccatttaaaaaaatttgtaaagattttttttaaatcatactgacagctaactttaggatttgtcatacaggactgtgacatttactttccaaagtctctaaagaatacgggtctgtggtgatgaatacagtacaatcctttttcactgttgagttaatgtaaattttatatatgtttcacagtattaatgtgatagactagatgctattatttatttttatttactaaggagtgctcattatacttctgttaacatatcaagaatgctttgaacttagaaagtaaaatcctttttgtggggacattactcttcaaatgaaaaaaaaaaaaatatgcaatcgatgtggtgagaggagagagatgcagccagggtctgttgtagcttgggatttgcagaaaggctttttcaatgtgcacacaacacagcaggttttacctctgcggttcagacgcacacaagaccaacatcctacattcattcaagcacaaaacaattgtattttatttatatgttgagtagtggtgaagcaggagctctgctagaggagagtggctcgctggaagttaggcagaagtcagagaatctatgcagtaaagataaaaattaggaaactgaagtttacttagggagggaggtgaagctctcttcattatgcataagatctgtaggaaatgtgagagttttgccattctcttaggagaagcattaattaaaactgctaattatgagacagatgcttctgttagtttgcacactggattcataaaaaccataacacatgtaaaccattgcactaatgacaatgccacgagcaggtttaggagaaaatggaaaaagcccaggaaagttgtttatgctgacttgatcttgtttgtttttccatgggataactgaaataagatgctgagaggcaggttggaaagccttcattctcctccactgatggatttgctttgtcttttcccttttctccgagcagctgctcagtctctttggacacttttacctctggccactgggatgggcaagtagctttaacccatgcagagctctgggccacagagcaggtcagctgcaaccaggtggtgttggataagctagaaaatgcccagcctttgctgcataaagacttttaggtacataattccagtccagatcttcaccttgtagcagtgtgtcagttgtggtgttttgtaggtgaaatgtaaaacctgttaatgaaataatcatatttgtactattctaattgggcgattaggctgctggctcagagtgtcttcttggtcatagttctagaaattcagatttctgtaaatttgaagcaaatcctaggtagcattgtctgtcttgctgtgtgccagcgaggttgtacctacctcccctcaagcacccctaagctgcagatcctccccgtggtgggtgtgttgcacttctctgtgtttccttcagagctttcctatttcagtgaagatattcatttggcagagttttat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gttctgtatcaaacggaatgcagggaatacagttctgtatcaaagggaataatcctttccacagggttctcaggagtgcacaggttttagttgtatttttttccccacattttggatgtgctgtcgaaccatggactttgttatttttcttcctcccttctctgagcacaactaaaccacttgctggaacagctgctctctgctcatcagcagggattgcagatgctgtctgacctgggagcaagcctaggagttgtccccataatacaattttaacttttccagtcattttattggggttttttgagtgtgcttggcaagcatgaatggtgaacaggtcagcaggcaagcttgggagtctctaatcccctggctggtgttgtttgtgtttgctttgttaggttagatttcctgttaggaaaaaaaaaaagtggactcttttctgtatttatcagcttttcctggttttaaagccatgaatagaggaagcttcagtcatgctggtttttgtgaaattgcacatttttgcctgatatgtacttgactcaaagcagatcctgtctgggctttatgggcaccccaaaactcagctgctgggggttggatcagacctctcatgtaccaacgtgacatgcagtgaattttgtttctagatttcaccaaagttagttcaactgtgagctgctcaaacctgttttatagcactgtttctatgctgttaaaaagtaaggatttgacccaaagtctgtcgttcctgatggattttctcatgaaacttaaagactgagcccttcaattgctcatctcatttacaaatgacagcttcataactgcattttacagaaaataagaggaaaaaaaaaacccaaaccattaaaaaccattaaggagtaagctttagatttatgttggaaaatctaattttcaatgaggtgcaatgaggaattacatctggcaaagttctgtgccatcctgaagagtgttaccacttcctttctgtaatttgttggtaaaatttagtagattttttggatctgtgtgtgtccctttctgtgtgtgtgcacacacgtgtgacaggacaggggacagtgtataggctgtctgtaaaagatacaatgacaatatttggctggaaataacaagcacaatttccctggcttttacagtattttattgtacaatcacaaagatttcaacatttagggcaattgataagtaaagacccagccccagatttctgtgcagcggagtggttgacttgatcctgggagggcaagatggaaaacagaatgtattgattaaatctattttttttttttgctttaattatggtacattgcaaaataaactgacttttatctgttaaggttttaatcttctaatagtttcaaaaattcttttaaaattattttttataacataactgaaaaaaaacccaaaaatcaatccagaagcttcatattgtaaatgttccctccaatcaaaatgtttttgtgaccatttaaagttttgttttttggttttctgggtttttttt
//

by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]