2024-04-26 19:41:28, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_041420800 11540 bp mRNA linear VRT 05-MAY-2021 DEFINITION PREDICTED: Onychostruthus taczanowskii argonaute RISC catalytic component 2 (AGO2), transcript variant X1, mRNA. ACCESSION XM_041420800 VERSION XM_041420800.1 DBLINK BioProject: PRJNA703052 KEYWORDS RefSeq. SOURCE Onychostruthus taczanowskii (white-rumped snowfinch) ORGANISM Onychostruthus taczanowskii Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Passeriformes; Passeroidea; Passeridae; Onychostruthus. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_024504344.1) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Onychostruthus taczanowskii Annotation Release 100 Annotation Version :: 100 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.6 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..11540 /organism="Onychostruthus taczanowskii" /mol_type="mRNA" /isolate="IOZ18803" /db_xref="taxon:356909" /chromosome="Unknown" /sex="pooled male and female" /tissue_type="blood" /altitude="4200 m" gene 1..11540 /gene="AGO2" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 ESTs, 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 9 samples with support for all annotated introns" /db_xref="GeneID:121344649" CDS 147..2741 /gene="AGO2" /codon_start=1 /product="protein argonaute-2 isoform X1" /protein_id="XP_041276734.1" /db_xref="GeneID:121344649" /translation="
MYPGAPSAGPVLTPPPPLPPPIQGYAFKPPPRPDFGTSGRTIKLQANFFEMDIPKIDIYHYELDIKPEKCPRRVNREIVEHMVQHFKTQIFGDRKPVFDGRKNLYTAMPLPIGRDKQVELEVTLPGEGKDRIFKVAIKWMSCVSLQALHDALSGRLPSVPFETIQALDVVMRHLPSMRYTPVGRSFFTASEGCSNPLGGGREVWFGFHQSVRPSLWKMMLNIDVSATAFYKAQPVIEFVCEVLDFKSIEEQQKPLTDSQRVKFTKEIKGLKVEITHCGQMKRKYRVCNVTRRPASHQTFPLQQENGQTVECTVAQYFKDRHKLVLRYPHLPCLQVGQEQKHTYLPLEVCNIVAGQRCIKKLTDNQTSTMIRATARSAPDRQEEISKLMRSASFNTDPYVREFGIMVKDEMTDVTGRVLQPPSILYGGRNKAIATPVQGVWDMRNKQFHTGIEIKVWAIACFAPQRQCTEVHLKSFTEQLRKISRDAGMPIQGQPCFCKYAQGADSVEPMFRHLKNTYTGLQLVVVILPGKTPVYAEVKRVGDTVLGMATQCVQMKNVQRTTPQTLSNLCLKINVKLGGVNNILLPQGRPPVFQQPVIFLGADVTHPPAGDGKKPSIAAVVGSMDAHPNRYCATVRVQQHRQEIIQDLAAMVRELLIQFYKSTRFKPTRIIFYRDGVSEGQFQQVLHHELLAIREACIKLEKDYQPGITFIVVQKRHHTRLFCTDKNERVGKSGNIPAGTTVDTKITHPSEFDFYLCSHAGIQGTSRPSHYHVLWDDNRFSSDELQILTYQLCHTYVRCTRSVSIPAPAYYAHLVAFRARYHLVDKEHDSAEGSHTSGQSNGRDHQALAKAVQVHQDTLRTMYFA"
misc_feature 432..659 /gene="AGO2" /note="N-terminal domain of argonaute; Region: ArgoN; pfam16486" /db_xref="CDD:435368" misc_feature 687..839 /gene="AGO2" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:430160" misc_feature 840..1202 /gene="AGO2" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212" misc_feature order(996..998,1041..1043,1083..1085,1095..1097, 1149..1151,1170..1172,1176..1178) /gene="AGO2" /note="nucleic acid-binding interface [nucleotide binding]; other site" /db_xref="CDD:239212" misc_feature 1335..2612 /gene="AGO2" /note="PIWI domain, Argonaute-like subfamily. Argonaute is the central component of the RNA-induced silencing complex (RISC) and related complexes. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the...; Region: Piwi_ago-like; cd04657" /db_xref="CDD:240015" misc_feature order(1746..1748,1758..1760,1794..1805,1812..1814, 1836..1838,1845..1847,1857..1859,1869..1871) /gene="AGO2" /note="5' RNA guide strand anchoring site [active]" /db_xref="CDD:240015" misc_feature order(1950..1952,1956..1958,2166..2168,2580..2582) /gene="AGO2" /note="active site" /db_xref="CDD:240015" ORIGIN
cccttttcttttccttccccctcccctttccttcctcctcctcctcctccccttcccccgacagcgtagccggggctcgggctcgctccctcccccgtgccctcccctagagctgccgccgcctccgccgccgcacacacggagacatgtacccgggagccccctccgccggacccgtgctcacacctcctcccccattgccaccaccaatacagggatatgcctttaaacctcctcctcgaccagattttggcacttctgggagaacaatcaaactgcaggccaacttctttgaaatggacattcctaaaatagatatctaccattatgaattggatataaagccagaaaaatgtcctagaagagttaacagagaaatagtggagcatatggttcagcactttaaaacccagatttttggggatcgcaagccagtgtttgatggaagaaaaaacctttatacagccatgccacttcccattgggagagataaacaggtggagctggaggtcacgctgccaggagaaggaaaggacagaatatttaaggtggccatcaagtggatgtcctgtgtgagcttgcaggctttgcatgatgctctctctggccgcctgccgagcgtcccgtttgagaccatccaggccctggatgtggtcatgaggcacttgccttccatgaggtatactcctgtggggagatctttctttacagcatcagaagggtgctcaaatcctttgggtgggggcagagaagtttggtttggcttccatcagtcagtcagaccttcattatggaaaatgatgctaaatattgatgtgtctgcaactgcattttacaaagcacagccagttattgagtttgtctgtgaagttctggacttcaaaagtattgaagaacaacaaaaacctctgacagattcccaaagggtaaagtttaccaaagaaataaaaggtctgaaggtggagataacacactgtggacaaatgaaaaggaagtacagagtgtgcaatgtcaccagacgaccagcaagtcaccaaacattcccacttcagcaggagaatggacaaacagttgaatgcactgtagctcagtattttaaggacaggcataaattggttttacgctaccctcaccttccatgtttacaagttggacaggagcagaaacacacataccttcctctagaggtgtgcaacatagtggcaggacaaagatgcataaagaaactcactgacaatcaaacttccactatgattcgagccactgccagatcagccccggaccggcaggaagagatcagcaaattgatgcggagcgccagtttcaacacagacccttacgtccgagagtttgggatcatggtcaaggatgaaatgacagatgtgactggcagagtccttcagcctccctcaatcctctatggaggcaggaataaagcaattgctacaccagtgcaaggtgtctgggacatgaggaataaacaatttcacactggaattgaaataaaggtttgggcaattgcctgctttgctccccagcgccagtgcactgaagttcatctgaagtccttcacagagcagctgaggaagatttccagggatgctggaatgccaatccaggggcagccctgcttctgtaaatacgcccagggagccgacagcgtggagcccatgttcagacacctcaagaacacttacactgggctgcagcttgtcgtggtcattttgccaggaaaaacaccagtctatgcggaggtgaagcgcgttggcgacacggtgctgggaatggccactcagtgtgtgcagatgaaaaacgtccaaagaacaacaccacaaactctgtccaacctttgcttaaaaataaatgtcaaattaggaggtgtaaataatattctactgccacagggaagaccccctgtattccaacagcctgtcatattccttggtgcagatgtaactcacccaccagctggggatgggaaaaagccttccattgctgcagttgtaggaagcatggatgctcatcccaaccgttactgtgccactgtgcgggtgcagcagcaccgccaggagatcatccaggacttggctgccatggtcagggagctgctgatccagttctacaaatccaccaggttcaaaccaactcgaatcatcttctacagggatggtgtttctgaggggcagttccaacaggtcctccaccacgagctgctggctatcagggaggcttgcattaaactggagaaggattatcagcctggcatcacatttatagtggtgcagaagaggcaccacaccagactcttctgcacggataaaaacgaacgggttggaaaaagtggaaacattccagctggtaccacagtggacacaaaaatcacccacccctcggagttcgacttctacctgtgtagtcatgctgggattcagggaacaagcagaccttctcactaccacgtgctgtgggacgacaatcgcttctcgtcggacgagctgcagatcctcacctaccagctgtgccacacctacgtgcgctgcacgcgctccgtctccatccctgccccggcctactacgctcacctggtggccttcagagccaggtaccatctggtggataaagaacacgatagtgctgaaggaagccacacttctggccagagcaatggcagagaccaccaagcacttgctaaggcagtccaggtgcaccaggacacgctgcgcacgatgtactttgcttgacatgttttaatgttcagcggctcccgacaaggcagagttggattcacaccagaccagctgcacttagaccaacagatgccccaccccagggacagccagcaatgagtgatgcatctttattcctttctttcccatttgcaaggaagccttccgtccagaatttcagacttgatcacaaactgcattcttgtaccaaaccccactgttgtcggaaatgtggtttgccaaaaaaatctctgagctgcttggtataaaacagacccagattttataattaaatcaagagctgcaatctcagggcttagggaagaaaaacaaaaaaaccaaaccaacaactcaacccacaaaacttctcattcagtttgctgttcattgagttgcttttgataatttggaaagatctaattcatactaaggtttgatgagctaaaacgctgtgaatcagcttttagtacaaaggaaagcaaatcatcttttgagtatttatgaagccttgattattctagatgcatttacaaaatttttattttcaaaataagagcgtgacaaattctggtttctaattgtcttataaagattattctcagattattctctgtgtgtctaaggacaaatgtattttctgaagcttcttcttgaatgttttttattgtgctgcattttaaaatgtttttcatagactaaggtgaatttaaaaaaaaaaaaaaaaagagtaaacctgtacctaagcttttaatagctccagttagattggcagaagaaaatgtgccatttaaaaaaatttgtaaagattttttttaaatcatactgacagctaactttaggatttgtcatacaggactgtgacatttactttccaaagtctctaaagaatacgggtctgtggtgatgaatacagtacaatcctttttcactgttgagttaatgtaaattttatatatgtttcacagtattaatgtgatagactagatgctattatttatttttatttactaaggagtgctcattatacttctgttaacatatcaagaatgctttgaacttagaaagtaaaatcctttttgtggggacattactcttcaaatgaaaaaaaaaaaaatatgcaatcgatgtggtgagaggagagagatgcagccagggtctgttgtagcttgggatttgcagaaaggctttttcaatgtgcacacaacacagcaggttttacctctgcggttcagacgcacacaagaccaacatcctacattcattcaagcacaaaacaattgtattttatttatatgttgagtagtggtgaagcaggagctctgctagaggagagtggctcgctggaagttaggcagaagtcagagaatctatgcagtaaagataaaaattaggaaactgaagtttacttagggagggaggtgaagctctcttcattatgcataagatctgtaggaaatgtgagagttttgccattctcttaggagaagcattaattaaaactgctaattatgagacagatgcttctgttagtttgcacactggattcataaaaaccataacacatgtaaaccattgcactaatgacaatgccacgagcaggtttaggagaaaatggaaaaagcccaggaaagttgtttatgctgacttgatcttgtttgtttttccatgggataactgaaataagatgctgagaggcaggttggaaagccttcattctcctccactgatggatttgctttgtcttttcccttttctccgagcagctgctcagtctctttggacacttttacctctggccactgggatgggcaagtagctttaacccatgcagagctctgggccacagagcaggtcagctgcaaccaggtggtgttggataagctagaaaatgcccagcctttgctgcataaagacttttaggtacataattccagtccagatcttcaccttgtagcagtgtgtcagttgtggtgttttgtaggtgaaatgtaaaacctgttaatgaaataatcatatttgtactattctaattgggcgattaggctgctggctcagagtgtcttcttggtcatagttctagaaattcagatttctgtaaatttgaagcaaatcctaggtagcattgtctgtcttgctgtgtgccagcgaggttgtacctacctcccctcaagcacccctaagctgcagatcctccccgtggtgggtgtgttgcacttctctgtgtttccttcagagctttcctatttcagtgaagatattcatttggcagagttttatataagaattatttttatatgaattcttcttatcaaataggataaagatcatcaattttaagacatcatttaacttatttgctgtctgttatgcagagacctcttggatgtgaaattcatccccctccttccatgcagatctgggacagtggaattgtacaggtggtcagatggggtgaggagggcaggatctgtcttgacctcaaatctcatttctgaagcagcctctgactgcactgcatcctatttaaaatgtttcctttgtgagaaaaggagttttaggcaggcccttaatctgagagtagctgttgtttgtgcatcctcttggaataagcagaaattatgtagctttccttccctaagtatgaagaacttgggatgtttatgtgcatttcaggacatttttaccttttacagatctttctaagcctctaatactgctaattctttatgccttgtgattcacagaaagactccacaactggtaaagttgtaaagtaggtctgtatttatttggtgatgggcaaattaatttctaaccctcatgtttcacttgtgtctcactccttttccctcccaccactggtgaattagtgaataatttaaagcatttaaaaaaaatactgattagatatatactttgtaaagtacagcatgctggcagtccagcacttcccttcctgggaatatttttaacataaattacatattcaggaatgcctcctgtccaaaaaaacctgccacaaacacataaaatcctagaattactttttattctgcacctcccacaggtctggtgtagaacagcaacatctcaggtcagcacaaagctcaaggagtctcagtctcccccaggctgctggtggagaagtgccagctgaggtcacagctctgagcctggatcactgtgcaggtcaggccagcaataaccaaatttgtgccaccctcaggcacttggggcattttccagcctgtgcaaaggagtctcattgcacagctcccccaaaacagcatcagcaagtgtgaaatgctcctcttgggaggtgacaagtgctatcaaaatacacaaaatacttaaaagtttgtctttttttccctgatgtacaaaatctaatgcaattatgaggtttgcttggtggtggaagtttctgctgcagtggctgaacagagtaaccagtccactccatctgttctagcccccaggaaacaactgagctgatccttaggagcaaatgtcctgttgggaaatgctggaaggaggtggatttgtctctgccattatgtggcatttaagacagccctatgcaatttaacacttgtgtgtgtgtgtatgcactgatgtacagagtgaggtcacttgttttgttagagctccttattttggcttggcttgctttagaatatttgactttgtgaattgcaatcaataatcttccacgttccagaggctttggcacaggaattcccttgtttcttgatctgtcaggtaacaaatacctttgatctccatccaggcccccaggcagcgttccctgattgtaaaatcaaaaaggttgtgaaggtttggctttaattctgcctctctcaataactcctgcagcctttgttgtaacagagtcttgttcttgttggatcatttttataacataagacaagaggtttttccacaaggattttcaaattgaaacttctggagaggaggtgtgaggggtttagagttttttttcctgaaaagattgaagtttctaagatgcttctaagtttttctttctgactaaagttgttcatgtagatgcccaaaggcttttgattaaatagcatactcactcaaataagcacctctggtagcataaataacccataagggacttttttttttttaatatatcttttttctcattaactaaacgaatgtaagaagagttctcagtatttttcacacttgagaccagtgtaattaaactcacttgttttcctgtttttaatactcttctaccatagtatctctctttgtgtggctttccccattcctaatgcagggcagtcctttgttttttacttttatattccatctggtcacatgcttcttgattcacacatgccatctttcttaaggaaaacttcaagtagaaggtaattgcactgattgttgggtttttaaaactccctttttactgtaagatttttttttttgcatctgctgtagctgtttgaaaatactgtaaatagtgctctgtacagcaagtactgaaatgctggagataccattccttgttctattttccagaatactgccatattttccagtgttgaggtaggagctttgctgttaaatgctgttatactttgtgtgcattatggtatcaatccaagaagggcacagttgctgtattacagtggaaatacttagggtttttctgaatttataaaacatttcttccttctctcctctgtgcacatttctcccagaccacagagatgcagtttttcagctctcactgtgctcattgtctgtgcaaggttcagatgccagtttttggtatcagtttgatgaactgatggcattaatgtaatatttggattatcagatgtagctctcccaggttttccttgcttgtctgattcttgtgttgtagaagcagaatctgtggatgtggcagaatttagtggaatgacagggatttgggatccacttatgatgtcttgctgtctgtccctgcatggtgtggggttggagttgcagaggatctttcagtgctctgagctgcctatggatctctcatccatccatcagcaattgccttttgcttccagaaccctcagagatgggacagagtccaattccaccccccttggctgatgttaggatgcaaaccagcaagttctgccttctgtttctgagggttaatgactggaaagatgcatttctgagagggtttaatccaaattgtatgggaagggagtgctgtgtgtgcttggtgtggcacagaacctgtttagtcccatttagtgtttcagttgctttgtcagagttgtttctttgaagtgttaatttgaatgtaattgcttggccaaatcactacaaaagtgggtttatgggaatctttagttacaaaacagatgcagttcaaggctacctcctgtattccttcatggaagaactaattgaagtgaacttcccactaagcagccaaaatgctcccagagggactggatttgtgctggtctgttccttactgggaagtggcagtgccatactgtgattctgggtggctgctcagccttccctctgtctttcagaggcatccctgtttattgagagggtaccagacctggcaagtggcacatctggcacatctgcttctggtcagggtcactccatagcagcagctccctctatgacctgtcccttcacttgagtttctatactgttgttttccaaatgaaaaatgtttctgtactttacttgttggccagaaaacgtcaggttttctctgcaaatgacatgaaggtgcttgaaatatattttgagtctgaggcaaaaaatacgtattggattatttttttaatgtgttttctaggtaaggtgacatgcgactgtaagaatgaaaatactttattccctgctcagaaaatgataaactttaaaatgtgggggaaaaaaacaacccaaaacaccaaaaaacaacccaaacctgagtatgttcatcttgggactgtttagtgtcagttctgtgcaaagccttggccaaaactcaaccttgacatcagtgcacgtggactgagggtacttgaagtgacctgaaatcaaactgtagagaactgtgttaatacatcaaattttgtttacaattattccaaacaagcttcctcatctcggaacaaaccactctgctgacagaaatacctgttggagcacagtgtgctgatgtggtttcatagcagtgttaaagttgatttttatttacaagtgactgggctttctgctgtggattttggcctgtcagagtgagtttcctgagattctgtgcttcctgtaatttccttcccttaatctctgggtctagactctgatgaagctcatccatggcaggaggattgcttatgtcctgactttctggaacccagatctggcaagtgactgaataaaccattataaaccagctccttaataactgaatgtggtaaaatcctgtcagtttggttcagttctcagtcatgatttaacaaagcctcccccaaaagtgtgaagtgcagggtaaatggctgctttggagaagatgtttcactactttgtgcactgcagatcgtggacaccattgctggcagggcttgcagtgtgcagaacagctcctctgtcattggtgggagcagagttttgtgttttccagacaaggcagacccaggatcatcaggaagtttggggagtgaaggagctccatgctgggtgctgctcatgccctagagaagagaaaccctggataccccaagccttggggaaatgagagaggaagcgaggggagacatttccttcaaaattgccaatttaagcacttgttaaggtgacagtttaattcttagttttccttctggcttctctgcaagtgccccacagaaatcctccaccctgcacccatctgctggccctgtcccagaaggggaaggctggcagggagctccaggagtcgatttgtggtgttgggagctctgacttggttggggccgggccaggagcgctgctggatctggagggacaggaggttggcaggagtttggcaggagttcattgtgggagttctgcaagtggcagcactacaaacccacagtaccagatgcaggctgtggctgctccttcctcccacctaaatatcccccagaaaagcaattccttgggatttgtccatgcactgcctcagcagatccattgtaaacctgcctgaggctgctcttccaccagccaacctccctgaggctccctgaggagccttgggttgcatggcagttctgtatcaaacggaatgcagggaatacagttctgtatcaaagggaataatcctttccacagggttctcaggagtgcacaggttttagttgtatttttttccccacattttggatgtgctgtcgaaccatggactttgttatttttcttcctcccttctctgagcacaactaaaccacttgctggaacagctgctctctgctcatcagcagggattgcagatgctgtctgacctgggagcaagcctaggagttgtccccataatacaattttaacttttccagtcattttattggggttttttgagtgtgcttggcaagcatgaatggtgaacaggtcagcaggcaagcttgggagtctctaatcccctggctggtgttgtttgtgtttgctttgttaggttagatttcctgttaggaaaaaaaaaaagtggactcttttctgtatttatcagcttttcctggttttaaagccatgaatagaggaagcttcagtcatgctggtttttgtgaaattgcacatttttgcctgatatgtacttgactcaaagcagatcctgtctgggctttatgggcaccccaaaactcagctgctgggggttggatcagacctctcatgtaccaacgtgacatgcagtgaattttgtttctagatttcaccaaagttagttcaactgtgagctgctcaaacctgttttatagcactgtttctatgctgttaaaaagtaaggatttgacccaaagtctgtcgttcctgatggattttctcatgaaacttaaagactgagcccttcaattgctcatctcatttacaaatgacagcttcataactgcattttacagaaaataagaggaaaaaaaaaacccaaaccattaaaaaccattaaggagtaagctttagatttatgttggaaaatctaattttcaatgaggtgcaatgaggaattacatctggcaaagttctgtgccatcctgaagagtgttaccacttcctttctgtaatttgttggtaaaatttagtagattttttggatctgtgtgtgtccctttctgtgtgtgtgcacacacgtgtgacaggacaggggacagtgtataggctgtctgtaaaagatacaatgacaatatttggctggaaataacaagcacaatttccctggcttttacagtattttattgtacaatcacaaagatttcaacatttagggcaattgataagtaaagacccagccccagatttctgtgcagcggagtggttgacttgatcctgggagggcaagatggaaaacagaatgtattgattaaatctattttttttttttgctttaattatggtacattgcaaaataaactgacttttatctgttaaggttttaatcttctaatagtttcaaaaattcttttaaaattattttttataacataactgaaaaaaaacccaaaaatcaatccagaagcttcatattgtaaatgttccctccaatcaaaatgtttttgtgaccatttaaagttttgttttttggttttctgggtttttttt
//
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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