2024-03-29 13:46:12, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_041363529 3363 bp mRNA linear PLN 15-SEP-2021 DEFINITION Suillus fuscotomentosus NRDE-2, necessary for RNA interference-domain-containing protein (F5891DRAFT_1097551), partial mRNA. ACCESSION XM_041363529 VERSION XM_041363529.1 DBLINK BioProject: PRJNA727288 BioSample: SAMN12811781 KEYWORDS RefSeq. SOURCE Suillus fuscotomentosus ORGANISM Suillus fuscotomentosus Eukaryota; Fungi; Dikarya; Basidiomycota; Agaricomycotina; Agaricomycetes; Agaricomycetidae; Boletales; Suillineae; Suillaceae; Suillus. REFERENCE 1 (bases 1 to 3363) AUTHORS Lofgren,L.A., Nguyen,N.H., Vilgalys,R., Ruytinx,J., Liao,H.L., Branco,S., Kuo,A., LaButti,K., Lipzen,A., Andreopoulos,W., Pangilinan,J., Riley,R., Hundley,H., Na,H., Barry,K., Grigoriev,I.V., Stajich,J.E. and Kennedy,P.G. TITLE Comparative genomics reveals dynamic genome evolution in host specialist ectomycorrhizal fungi JOURNAL New Phytol (2020) In press PUBMED 33355923 REMARK Publication Status: Available-Online prior to print REFERENCE 2 (bases 1 to 3363) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (15-SEP-2021) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (bases 1 to 3363) AUTHORS Kuo,A., Lofgren,L.A., Vilgalys,R., Nguyen,N.H., Ruytinx,J., Liao,H.-L., Branco,S., LaButti,K., Lipzen,A., Andreopoulos,W., Pangilinan,J., Riley,R., Hundley,H., Na,H., Grigoriev,I., Barry,K., Stajich,J.E. and Kennedy,P.G. CONSRTM DOE Joint Genome Institute TITLE Direct Submission JOURNAL Submitted (22-APR-2020) DOE Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598-1698, USA COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. This record is derived from an annotated genomic sequence (NW_024539513). ##Metadata-START## Organism Display Name :: Suillus fuscotomentosus FC203 v1.0 GOLD Stamp ID :: Gp0217367 ##Metadata-END## COMPLETENESS: incomplete on the 5' end. FEATURES Location/Qualifiers source 1..3363 /organism="Suillus fuscotomentosus" /mol_type="mRNA" /strain="FC203" /db_xref="taxon:1912939" /chromosome="Unknown" /country="USA: California" /lat_lon="39.3202 N 121.377 W" gene <1..3363 /locus_tag="F5891DRAFT_1097551" /db_xref="GeneID:64657827" CDS 1..3252 /locus_tag="F5891DRAFT_1097551" /codon_start=1 /product="NRDE-2, necessary for RNA interference-domain-containing protein" /protein_id="XP_041233803.1" /db_xref="GeneID:64657827" /db_xref="InterPro:IPR013633" /db_xref="JGIDB:Suifus1_1097551" /translation="
MSTPSFSSFPPSFASFPDLDPGPSRNTLDRTRNENSTDAREKDSMVKKDNSRRGSKKLADKSRKDKKHKTAKHDLEPVLPRQHGHTWKGVNIPDDGKIKAEEDRRLAESDTQESQWDSRPVFFSDRKGDQLNVTYGGIHAGNIPKYHIVNRGRSILGLDGDWTIYRGSKGIEINIGRRHKQPALTDLSVTTLLAAPPSRRIIGSGDSYKYEEVDGFLRLPSDHGYKAAENYRSVTRQQEHLDSDSQSSTPDDSSGDESGPILTSHQLSLKTLEQQLAADPSSVETWLSLVRHSLSNIPVTSKNATKARAEITLAILTRARASHPHNRSSRILFLNYLRAGEEVWHESKTKAEWEEALKLGGIEIWMEWLEWRIRTAAGGADTSVMDATRILSALGSSESCEIDKLRVVWRVAVAFQQAGYYERTTALFQAQAELTFEVPQPLYGLPLESQLESLEEFWESEAPRIGEPGAKGWGHWISCGRPENSSSPLEAIPQMDGDIQSKDPYVQWHYDESRADCTSRVPARSVDTRSHSDPYATVLLSDIKALLLPLRTKGAKNAFRLIWLSVLGLHIPSLAETLSQGSWDDRWSLTYLYSFSRLDSIFPATAGQRQLIADSHAGTLIGREREFSSSFGPIKEWSRDTLGPLEWVGQEKWRMWTAVDLQGIDQDFVRAVFKQLRCGSEDHEWGIYALAFEAALDIKSALKLSRSFLSTARDSLPHWASHARLERLRERVGDARKVYQTVLVASQHPPTQPFVGRLWWDWAEMEWLNGDRNAVLRVIQRSVNIEGAGGMMILRVKRTLDDMISCAHEQWKDREGWIKLRALIELLTSSSQDGALTIFDSHTSVNESSDSRESMMVASLILLYNHSVMLRSPTPPAVLRDRLQIAVNTYPNNSLVLGMFLEAEKGYGIWGRVRAQLGQSTADGGPREKNISRRIAEVWVAGWEKGRWQSEIERTRSGLTAAVESERTTGSAILWRVILEFEIRVEELQRAKKLLYRAVNECPLAKDLYMVAFGPLRSMFSARELDGFVDIMAERGIRMRKGVDEYVERMTSGDERGSDNEDLDGSEDEIEHEARQRRLLMPY"
misc_feature 364..>477 /locus_tag="F5891DRAFT_1097551" /note="MTR4-interacting domain (MID) found in nuclear exosome regulator NRDE2 and similar proteins; Region: NRDE2_MID; cd22200" /db_xref="CDD:412062" misc_feature 814..1704 /locus_tag="F5891DRAFT_1097551" /note="necessary for RNA interference; Region: NRDE-2; pfam08424" /db_xref="CDD:429988" ORIGIN
atgtccacaccctcattttcgtcatttccaccctcattcgcctcgttcccagaccttgaccctggtccgagtaggaataccctggaccggacgcgaaatgaaaactccacagacgctcgggagaaagatagtatggttaaaaaggacaacagccgacgtggcagcaagaagttggcagacaagtctcgaaaggacaaaaagcataagacggcgaagcacgacctcgagccggtgcttcccaggcaacacggacatacatggaagggagtaaatataccggatgatggaaaaatcaaggccgaggaggatagacgtcttgctgagagtgatactcaagaaagtcaatgggattctcgcccagtatttttctctgatcggaaaggtgaccaactaaatgttacctacggcggtattcacgctgggaatattcccaagtaccatattgtaaaccgtggtagaagtattcttggtcttgatggggactggactatctatcgcggaagcaagggtatagagataaacataggaaggaggcataagcaacccgccctgaccgacttgagcgtgacaacattgttggcagcacccccgtctcgacgcattattggatccggggatagttacaaatatgaagaagtggacggtttcttgcgactgccctccgaccatggttacaaagctgccgaaaactatcgttctgtaaccaggcagcaagaacaccttgattcagactctcagtcgtctactccagatgacagctcaggtgatgagtcaggacccattctcacatcacatcagttatctttgaagacactcgagcagcagttagctgccgatccatcttcagtcgaaacatggttgtcactcgtgagacactcgttgtccaacattcccgtcacctcgaaaaacgcgaccaaggctcgggcagagataacgcttgctattcttacccgtgctcgtgcttcccatccacacaaccggtcatctcgcattctattcttgaattacttaagggcaggagaggaagtttggcacgaaagtaaaaccaaggccgagtgggaggaagccctcaaacttggcggaattgaaatttggatggaatggcttgaatggcgcattcgtaccgctgccggtggagctgacacgtcagtcatggatgcgacgcgcatcttaagcgctctcggtagctctgaaagctgtgaaattgataaactacgagtcgtatggcgagttgcagtcgcattccaacaagcaggctactatgaacgtactacagccttattccaggcacaagcggaactaacattcgaggtgccccaaccattgtacggacttccccttgaatcgcaactggaatccctcgaagaattttgggagtccgaagcaccgcgcatcggggagcctggagcgaaaggttggggtcattggatctcatgcggtagacctgagaattctagttccccgttggaggcgattccccagatggacggtgatatccaatcgaaagatccgtatgtccaatggcattacgatgagtcgcgcgccgattgcacgtcgcgtgtgcccgcccgctccgttgacacaaggagccattctgacccatacgcgacagttctgctttcggatatcaaggcactgttattgcccctccgcacgaaaggtgccaagaatgcgttccgcctaatctggttatccgttctgggcttgcatattcctagcctcgcagaaacgctatcgcagggatcttgggatgatcgatggtcactcacttacctctattctttctcgcggttggactcaatttttcctgctactgcaggacagcggcagctgatcgctgactctcatgctggcacgctcataggcagagaacgagaattttctagttcattcggtccgatcaaagagtggagtcgcgataccctcggaccgttggagtgggtaggccaagagaagtggcgcatgtggactgccgtagatctgcaagggatcgaccaggatttcgtacgagctgtattcaagcagctcagatgcggtagtgaggaccatgagtggggcatttatgcattagcatttgaggcagctcttgatatcaaaagtgctctgaagctctcgcggtcgtttttatcgacagcacgagattctctaccgcactgggcaagccacgcacgtcttgagcgcttgcgcgagcgggtgggtgatgcccgcaaggtctatcaaacggtacttgtagcctctcagcacccacccacccagcctttcgttggtcggttatggtgggattgggctgaaatggaatggctcaatggtgaccggaatgcggtactacgtgttatccagcgctcagtcaacatcgagggtgcaggtggtatgatgattcttcgtgtaaaacgcactctcgatgatatgattagctgcgctcacgagcagtggaaggaccgggagggttggatcaaactgcgagccttaatcgagctgcttacctcctcatctcaagacggagcactcacgatatttgactctcacacgagcgttaatgagagctctgattcaagagagagcatgatggtagcatctcttatactattgtacaatcattcggtcatgctacgaagtcctactccgccagctgtcctgagggatcgattacagattgctgtcaacacttacccgaacaatagcctggtgttgggaatgtttctagaggctgagaaggggtatggtatctggggtcgtgtacgggcacaacttggacaaagcacggctgatggaggcccaagggaaaagaacatttcacggcgcatcgcagaagtgtgggttgctgggtgggagaaagggcgatggcagagtgagatcgaacggacgaggagcggacttactgcggcggtggagagtgagaggacgacgggaagcgctattttatggcgcgtcattttggaatttgagattcgggttgaggaattgcaaagggcgaagaaactgctttacagagcagtgaatgaatgtccgcttgccaaagatttatacatggtggcttttgggccactgcgttctatgtttagtgctcgcgagcttgatgggttcgtggacattatggcggaaaggggtattcggatgaggaaaggtgttgatgaatacgttgaaaggatgactagcggagatgaacgcggttctgataacgaagatctggatggttccgaggatgagatcgaacacgaggcgaggcagaggcggctactaatgccttactagctaattctagtgtactattcccggtgtgcaaataaaccaagaccttgatattgttttggtttatttgtgacgaggacaccacattgcatgacaaatagttacaaacattct
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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