2024-04-26 20:36:12, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_041303660 2933 bp mRNA linear PLN 15-SEP-2021 DEFINITION Suillus plorans argonaute-like protein (HD556DRAFT_1394987), mRNA. ACCESSION XM_041303660 VERSION XM_041303660.1 DBLINK BioProject: PRJNA727287 BioSample: SAMN14510212 KEYWORDS RefSeq. SOURCE Suillus plorans ORGANISM Suillus plorans Eukaryota; Fungi; Dikarya; Basidiomycota; Agaricomycotina; Agaricomycetes; Agaricomycetidae; Boletales; Suillineae; Suillaceae; Suillus. REFERENCE 1 (bases 1 to 2933) AUTHORS Lofgren,L.A., Nguyen,N.H., Vilgalys,R., Ruytinx,J., Liao,H.L., Branco,S., Kuo,A., LaButti,K., Lipzen,A., Andreopoulos,W., Pangilinan,J., Riley,R., Hundley,H., Na,H., Barry,K., Grigoriev,I.V., Stajich,J.E. and Kennedy,P.G. TITLE Comparative genomics reveals dynamic genome evolution in host specialist ectomycorrhizal fungi JOURNAL New Phytol (2020) In press PUBMED 33355923 REMARK Publication Status: Available-Online prior to print REFERENCE 2 (bases 1 to 2933) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (15-SEP-2021) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (bases 1 to 2933) AUTHORS Kuo,A., Lofgren,L.A., Vilgalys,R., Nguyen,N.H., Ruytinx,J., Liao,H.-L., Branco,S., LaButti,K., Lipzen,A., Andreopoulos,W., Pangilinan,J., Riley,R., Hundley,H., Na,H., Grigoriev,I., Barry,K., Stajich,J.E. and Kennedy,P.G. CONSRTM DOE Joint Genome Institute TITLE Direct Submission JOURNAL Submitted (23-APR-2020) DOE Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598-1698, USA COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. This record is derived from an annotated genomic sequence (NW_024537438). ##Metadata-START## Organism Display Name :: Suillus plorans S12 v1.0 GOLD Stamp ID :: Gp0401707 ##Metadata-END## FEATURES Location/Qualifiers source 1..2933 /organism="Suillus plorans" /mol_type="mRNA" /strain="S12" /db_xref="taxon:116603" /chromosome="Unknown" /country="Austria: Tirol" gene 1..2933 /locus_tag="HD556DRAFT_1394987" /db_xref="GeneID:64597424" CDS 305..2758 /locus_tag="HD556DRAFT_1394987" /codon_start=1 /product="argonaute-like protein" /protein_id="XP_041157013.1" /db_xref="GeneID:64597424" /db_xref="InterPro:IPR003100" /db_xref="InterPro:IPR003165" /db_xref="InterPro:IPR014811" /db_xref="JGIDB:Suiplo1_1394987" /translation="
MDLIHHLQTIDAVDVFTPRAVYDGRKNLFAPRELPFGPQNSQEFDVCLSDDPNRGSPGENTGGRGPKVYKIRLTKVAQINPEVLQRFILGQQSHDNSVLTALTALNVVVRMEPTMKYPFNVRSFFTDRETKDIGSGLVLWRGYFQSVRPAIGQLLVNVDISTGTMYKSGALMDVCLEFLGRPGQHALLSPRSGLPDRERIRLQRFISGIRVKTTYAGENKTPRVVKKLSSAGAADLSFTLRDGTSRTVAQYFQTILNRPLRFPNNLCIEVGSGALIPVELCTIPPGQIMRKQVPPEKTKDVLEFATKRPEARLASITNGLSVLQYGQSEYVRQFGMHVEDTTGPLTVMARVLQPPKLKYGPGSAQPTITPSNGAWNMIDKRFFRPAAIDRWIVVVYERQQRFNPQAAQDMIDGMLRSFRDVGIRITDDKPMVTWQNGQGRIADQLRAAGTECFQRTKQRPQLIVVVLPENGNDIYTAVKHFGDITVGVATQCLKSQKCFRAKPQYYANVCLKVNVKLGGINTIPDPQSVSVLTDPRNPTIVMGADVIHPAPGSDGRPSFTALVGNVDSDTAKYIATSRVQASRVEIIEDLQDMAKHVLSMYMKYRQFAEKKTGNLAPTRLIFYRDGVSEGQFKQVLDSELKAIKDACAELKINPKITIIVVAKRHHVRFFPSGSGSNEQDKSGNCLAGTVVDQVVAHPTEFDWYLQSHGGLLGTSRPAHYNVLYDENEFSADGLQSLSFALCHVYARSTRSVSIPAPVYYADIVCSRAKNHYDPQGNVDFSDSATQLDTAQAEGALEAYKRGFKPLHANMASLMYFS"
misc_feature 371..631 /locus_tag="HD556DRAFT_1394987" /note="N-terminal domain of argonaute; Region: ArgoN; pfam16486" /db_xref="CDD:435368" misc_feature 668..805 /locus_tag="HD556DRAFT_1394987" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:430160" misc_feature 806..1153 /locus_tag="HD556DRAFT_1394987" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212" misc_feature order(977..979,1016..1018,1046..1048,1058..1060, 1112..1114,1124..1126,1130..1132) /locus_tag="HD556DRAFT_1394987" /note="nucleic acid-binding interface [nucleotide binding]; other site" /db_xref="CDD:239212" misc_feature 1289..2620 /locus_tag="HD556DRAFT_1394987" /note="PIWI domain, Argonaute-like subfamily. Argonaute is the central component of the RNA-induced silencing complex (RISC) and related complexes. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the...; Region: Piwi_ago-like; cd04657" /db_xref="CDD:240015" misc_feature order(1727..1729,1739..1741,1775..1786,1793..1795, 1817..1819,1826..1828,1838..1840,1850..1852) /locus_tag="HD556DRAFT_1394987" /note="5' RNA guide strand anchoring site [active]" /db_xref="CDD:240015" misc_feature order(1937..1939,1943..1945,2177..2179,2588..2590) /locus_tag="HD556DRAFT_1394987" /note="active site" /db_xref="CDD:240015" ORIGIN
gcggcggcggcggcggcggcggcagaggtggtcgtggcggtggtcgcggcggccctcgcggtggaccacctcctcgcggcggcccagctgggggaagaacagttcatgctcccactggtcccgccgctctgcctggaagccatgttcaggccgtgggggtaaaacgacctggatatggaacggcaggcagagcagtgaccgtattctccaacttcttcaagataagtctcccagaaagcgttatccatcactacgacggttggtgatctcgcctgatgagaaggtacttccagcacgcttaaacatggacttgatccatcaccttcaaactatcgatgccgtcgatgtctttacaccccgggccgtctacgatgggcgaaagaacctcttcgcccccagggaactgcctttcggtccacagaacagccaagagtttgatgtatgcctctccgatgaccccaatcgcggaagcccaggagagaacacggggggccgcggtcccaaggtgtacaagatcagactgacgaaagtcgcacaaatcaaccctgaagtcctacaacgctttattcttggacagcagtcacatgacaacagtgttttgaccgccttgacggcattgaatgttgtcgtccgtatggaaccgaccatgaagtacccctttaatgttcggtcattcttcaccgaccgggagactaaggatatcggttccggccttgtcttatggcgtggatacttccaatcagtgaggcccgcaatcggacaactgctcgtgaacgttgatatctcgactggaacgatgtataagtctggagcactgatggatgtctgtctcgagtttttaggtagacctgggcaacacgcgttgctcagcccgcgaagcggtttgcccgatcgtgagcgaatccgcttgcaacgttttatttcaggcatccgagttaaaacaacatacgccggggaaaacaaaaccccccgcgtcgtcaagaaattgagcagcgcaggcgctgcagatttaagtttcaccttgcgggatggaactagtaggaccgtggctcagtatttccaaacgatcctgaaccgtcctctgaggttcccgaataatctttgcattgaggttggcagtggtgccttgatccctgtggaactatgcacgattccaccaggtcaaatcatgcggaagcaggttccacctgagaaaacaaaggacgttctggaattcgctacaaagcgacctgaagcccgcctcgctagtattacaaacggtctttcggtccttcaatatggtcagtcggaatacgtgcgccagttcggcatgcacgtcgaagatactactggaccacttaccgtaatggcgcgggtcttgcaaccgccgaaactgaagtacggcccaggtagtgcacagccgaccattacaccaagtaacggcgcgtggaatatgatcgataaacgattcttcagacctgcagctattgacaggtggatcgtggtagtttacgagaggcagcagcggtttaacccacaggctgcacaagacatgatcgatggcatgttgaggagtttcagagacgttggtatccgtatcaccgacgataagccgatggtaacttggcaaaacggtcaaggccggattgcggaccaactgcgtgccgctggcactgagtgtttccaaaggacgaaacagcgcccacaactcatcgttgtagtgcttcccgagaacggcaatgacatttacactgcggttaaacatttcggggacattacagtcggtgttgcgacccaatgcctaaagagtcagaagtgcttccgtgcaaaaccgcaatattacgcgaacgtctgccttaaggtcaacgttaagctgggtggtatcaatactattccagatcctcagtctgtctctgttcttaccgatcctcgtaaccccaccatcgtcatgggtgccgacgtgattcatcctgcgcctggctctgatgggcgtccttcattcacggcactcgtcggcaacgttgattctgataccgcgaaatacatcgctacaagccgtgttcaagcctctcgggttgagatcatcgaagatctccaggacatggcaaagcacgtcctgagtatgtacatgaagtatcgccagttcgcggagaagaagacggggaatcttgcccccacgcgtctcatcttctacagagatggtgtttctgaaggtcaattcaagcaagttcttgattctgaacttaaggcgatcaaagacgcttgcgcggagttgaagatcaacccaaagatcacaatcatcgtggttgcgaaacgtcaccacgttcgcttcttcccatctggctcagggtcgaatgaacaggataagagcggcaactgcctcgcaggcactgttgtcgaccaggttgttgcccaccccacggaattcgattggtatctgcagagccacggcggtctgctcggtacgagtcgccccgcgcactacaatgttctctacgatgagaacgaatttagcgccgatggtttgcaatctctttctttcgctttgtgccatgtgtatgcacggtcaactcgctctgtttcaatccccgcccctgtgtactatgcagatattgtctgctcacgcgcaaagaatcactacgaccctcaagggaatgttgatttctctgattctgcgacacagctcgacacagctcaggctgagggcgccttggaggcgtacaaacgtggattcaagcccttacatgccaacatggcaagtttgatgtacttctcttgaacactgttgctttacctacttaatcacctcgaagcaaataacggaatcttttcttttctgtgaccgtgtatgatccagttcttctaactagtagtgtctcatgataaccccacctctgtaaaaaatacgtacgttgcacgaataccattgggacctgtattgcttgacgtattat
//
by
@meso_cacase at
DBCLS
This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
[Full Text]