LOCUS       XM_041244381            1797 bp    mRNA    linear   VRT 03-MAY-2021
DEFINITION  PREDICTED: Polyodon spathula vimentin (vim), mRNA.
ACCESSION   XM_041244381
VERSION     XM_041244381.1
DBLINK      BioProject: PRJNA726223
KEYWORDS    RefSeq.
SOURCE      Polyodon spathula (Mississippi paddlefish)
  ORGANISM  Polyodon spathula
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Actinopterygii; Chondrostei; Acipenseriformes; Polyodontidae;
            Polyodon.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_054536.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Polyodon spathula Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.6
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1797
                     /organism="Polyodon spathula"
                     /mol_type="mRNA"
                     /isolate="WHYD16114869_AA"
                     /db_xref="taxon:7913"
                     /chromosome="3"
                     /tissue_type="blood"
     gene            1..1797
                     /gene="vim"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 96 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 20 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:121312694"
     CDS             119..1477
                     /gene="vim"
                     /codon_start=1
                     /product="vimentin"
                     /protein_id="XP_041100315.1"
                     /db_xref="GeneID:121312694"
                     /translation="

MNRQSSSYKRMFGGERPSVSSRSYSSRQYSSPIRSRVSYTSHSAPTLYATKSSSMRVRSSAPQTRLVSETLDFALSDAINTEFKANRTNEKAEMQHLNDRFASYIDKVRFLEQQNKILMAELEQLKGKGTTKIGDLYEDEMRELRRQVDKLTNEKARVEVDRDNLGDDIHRLREKLQEEAIQREEAESTLHSFRQDVDNASLARLDLERKVESLQEEIAFLRKLHDEEIAELQVQIQEQHIQIDMDVAKPDLTTALRDVRLQYENLASKNMSESEEWYKSKFADLTEAASRNSEALRQAKQDCNEYRRQVQGLTCEVDALKGTNESLERQMHEMEENFALESSKYEDSIARLEDDIRNMKDEMSRHLREYQDLLNVKMALDIEIATYRKLLEGEESRITTPMPNFSSLNLRETSLEMRPAMESFSKKVLIKTIETQDGHVINEMTQDHDDLE"

     misc_feature    131..382
                     /gene="vim"
                     /note="Intermediate filament head (DNA binding) region;
                     Region: Filament_head; pfam04732"
                     /db_xref="CDD:428095"
     misc_feature    383..1309
                     /gene="vim"
                     /note="Intermediate filament protein; Region: Filament;
                     pfam00038"
                     /db_xref="CDD:425436"
ORIGIN      

cagtagactcttgcaggagctgttctgtctagggtctggactctggaggctgcagaaaaaacctaattacaacaaacacagaaacttcagcaaaataaagtattacagactgtgtacaatgaatcggcagtcgtcctcatacaaaaggatgtttggtggggagagaccatcggtttcgagccgatcatactcaagtcgacagtactccagccctatccgatccagggtatcctacaccagtcactctgcccctactctctacgcgaccaaatcttcatccatgagggtcagaagcagcgctcctcagaccaggctggtttctgaaacattggatttcgccttgtccgatgccatcaacactgagttcaaagccaacagaaccaatgaaaaggcggagatgcagcaccttaacgacaggtttgcgtcctacatcgataaggtgaggtttctggagcagcagaacaagattctgatggccgagttggagcagctaaaggggaaaggcaccaccaagatcggagacctctacgaggacgagatgagggagctccgtcgccaggtggacaagttaaccaacgaaaaggcgagagtggaagtagaccgagacaaccttggggatgacatccacagactaagagagaagctacaagaggaagcaatccaacgcgaagaagctgaaagcactcttcatagttttagacaggatgttgataacgcatctttggcacgtctggatcttgagcgtaaggttgagtcactgcaggaagaaattgcctttttgaggaagctccacgatgaagaaatcgctgaattgcaggtccagatccaggaacagcatatccaaatcgacatggatgttgccaaaccagatctcaccactgctctgcgtgacgttcgtttgcagtacgagaaccttgcttcgaagaacatgtctgaatccgaagagtggtacaaatccaagtttgctgaccttactgaggctgcatcccgcaacagcgaagccctccgccaggctaagcaggattgcaatgaataccgcagacaggtccaagggcttacctgtgaagtcgatgcactcaagggaaccaacgagtccttggagcgccagatgcatgagatggaggagaactttgctctcgaatcttctaaatacgaggacagtattgctcgccttgaggatgacatccgcaacatgaaggacgagatgtcccgtcacctgagagagtaccaggaccttctgaacgtaaagatggctctggacattgagatcgccacatacaggaagctgctggagggagaggagagccgaatcaccacacccatgccgaatttctcttccttaaacctgagagaaacaagccttgagatgagaccagctatggaatccttttccaagaaagtcctgattaagactattgagactcaagatgggcatgttatcaatgagatgacccaggaccacgatgacctggagtaaggcatctgaaagtccgaacatgtttctttagcagcacgactacagaaatgtttcattcaagcaagaaaaaaatgaccctcagtctcttgagaaaaaaaaaaaaaaagtgaaaaaaaaataacagcttcaaagtgcctttctgcagttatctgagcgcgccagatagagttatgttagaatgtaggctttgtaggtctgcagaacgggttagctggtatacagtttactacagagtctctaggttacattcagacagtaagacaatagcaatatcctgagcagcagtaccgatttttttacttaccattttcagattaaaa

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