2024-04-24 21:37:08, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_041105958 1636 bp mRNA linear PLN 25-APR-2021 DEFINITION PREDICTED: Gossypium hirsutum homeobox-leucine zipper protein ATHB-12-like (LOC121223716), mRNA. ACCESSION XM_041105958 VERSION XM_041105958.1 DBLINK BioProject: PRJNA713846 KEYWORDS RefSeq. SOURCE Gossypium hirsutum (cotton) ORGANISM Gossypium hirsutum Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_053447.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Gossypium hirsutum Annotation Release 101 Annotation Version :: 101 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.6 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..1636 /organism="Gossypium hirsutum" /mol_type="mRNA" /isolate="1008001.06" /db_xref="taxon:3635" /chromosome="D11" gene 1..1636 /gene="LOC121223716" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 167 long SRA reads, 7 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 179 samples with support for all annotated introns" /db_xref="GeneID:121223716" CDS 399..1118 /gene="LOC121223716" /codon_start=1 /product="homeobox-leucine zipper protein ATHB-12-like" /protein_id="XP_040961892.1" /db_xref="GeneID:121223716" /translation="
MLDGEEYREEMGEPFSSVVQVTPTKKKKNKNKRRFSDEQIKSLELMFESETRLEPRKKLQVAKELGLQPRQVAIWFQNKRARWKSKQLERDYTILQANYDHLASKYESLKREKQALLAQLQKLNDLIKKPKEEEQCCGQVNGMRCSEGASDKGETTVKSDSEGQLSLSMGRSEHALGALSDDDSAIRTDYFGLEEEPNLMSMVDPADGSLSSPEDWRSLDSDGLFDQSPCGYQWWDFWS"
misc_feature 498..650 /gene="LOC121223716" /note="Homeobox domain; Region: Homeobox; pfam00046" /db_xref="CDD:425441" misc_feature order(498..500,618..620,627..632,639..641) /gene="LOC121223716" /note="specific DNA base contacts [nucleotide binding]; other site" /db_xref="CDD:238039" misc_feature 654..776 /gene="LOC121223716" /note="Homeobox associated leucine zipper; Region: HALZ; pfam02183" /db_xref="CDD:426641" ORIGIN
aaaacctttactgcttccttttctaccttaaggacttacccctcaatatcttactaggatttaattaaaatttttaagggcaaaaaaatctagcacaaaagataggagtagaaatgaaaatttttataaaggcaaaagaggaaaagcactgtacgttatcagagatcccatagggtttggatataaagtaggaattagcagaatttagacatcctgtgagacccaaacccaagcagatggatacttacggttgtatataaataccagcatattcacaagtacaaacgtctaaaaacattccctgtttcttcgattcgtactgctacctactggcttgccggaccaacattcacagcacttacacaaaattttattaggaagcaaaatccagggcaaagatgttagatggggaagaatatagagaggagatgggtgagcctttttccagcgtggttcaagttacaccgactaaaaagaagaaaaacaagaacaagaggaggttcagcgatgaacaaatcaaatctctggaattgatgtttgaatcggaaaccaggcttgaacctcgaaagaagttgcaggtggctaaagagttgggtttgcagccacgacaggttgccatatggtttcagaacaagagagccaggtggaaatccaagcagcttgaacgagattacaccatcctacaagccaattacgatcatctagcttccaagtacgaaagtttaaagagagaaaagcaggccttactcgctcagttgcagaagctgaacgatttgattaagaagccgaaagaggaagagcagtgttgcggacaagttaacggtatgaggtgcagtgagggagcctcagataagggagagacgactgtgaagtctgattcagaagggcagcttagtttatcaatgggaagatcggaacatgcactaggagccttatcggatgatgatagtgccataaggacggattacttcggactggaagaagagcccaaccttatgagcatggtggatccagctgacggttctttatcctctccagaagattggcgcagtttagactctgacggtctttttgatcagtccccttgtggttaccaatggtgggatttttggtcttgaaataaccaaacaaaaacaaaactatatagaggaaaatgtatgcaaataatctttccttctctacactgggagacatgggggaaagcatgtctatgtatcattgaaatttagatgaagagaagtagattttgcggtcgtctagattctaaaacccaaacttcggcttccctggtatgtaccactttggattaagacacagaactggagttcacttgttgcttacaaatcatgtgcatatgtgtttgcatttgagactgggggagtgaggaacagtaaaggaggagcttataccacttccaatgctcaaaaaaatgatatattcaaatcactttatcagtttcctgcttctccttattggatgagcaattgtttcgtcctgcatgagattcaatcttcaattccagtactacttgtatgctgattatagcagatacgattcccctgtcctctctgaaactagaacagagggtataaacttgctatgattaatgttaatatcttggatgataaaaggctaa
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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