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2024-03-29 02:02:39, GGRNA.v2 : RefSeq release 222 (Jan, 2024)

LOCUS       XM_041061387            4977 bp    mRNA    linear   VRT 22-APR-2021
DEFINITION  PREDICTED: Toxotes jaculatrix NRDE-2, necessary for RNA
            interference, domain containing (nrde2), mRNA.
ACCESSION   XM_041061387
VERSION     XM_041061387.1
DBLINK      BioProject: PRJNA723051
KEYWORDS    RefSeq.
SOURCE      Toxotes jaculatrix (banded archerfish)
  ORGANISM  Toxotes jaculatrix
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Actinopterygii; Neopterygii; Teleostei; Neoteleostei;
            Acanthomorphata; Carangaria; Carangaria incertae sedis; Toxotidae;
            Toxotes.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_054410.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Toxotes jaculatrix Annotation
                                           Release 100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.6
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4977
                     /organism="Toxotes jaculatrix"
                     /mol_type="mRNA"
                     /isolate="fToxJac2"
                     /db_xref="taxon:941984"
                     /chromosome="17"
                     /tissue_type="liver, intestine, and heart used for
                     different sequencing technologies"
                     /dev_stage="adult"
                     /country="Singapore"
                     /lat_lon="1.3521 N 103.8198 E"
                     /collection_date="2019-10-29"
                     /collected_by="Byrappa Venkatesh"
     gene            1..4977
                     /gene="nrde2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 7 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 4 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:121197679"
     CDS             6..3623
                     /gene="nrde2"
                     /codon_start=1
                     /product="nuclear exosome regulator NRDE2"
                     /protein_id="XP_040917321.1"
                     /db_xref="GeneID:121197679"
                     /translation="
MRQTVMALFPAFGETASDKVEDSSKELDWLTNKSFQTKDALSLHSRFLGEKESRVGREVSSAEEEKEEEDNVPIKKKKRKSEKKKKKKKKHKKKSGRCSDSSGSDSETIYPSDLKREQEEDRSQAPLASRFSWLDDLQSPTEHPFCVDCKPDPANWTYKSLYRGDVARYKRKGSSSLGLDSRRQGVSWEESESNKKQKGGDKKKAADRYFSTLSRQLLRSESAVPTLLRSPDCSDVISSTSFLPLGDDEGENKGGETGNREQTSSVNPLGVYDSSTALWVQGKGQPGQTEQQKQDIQTGQSAMLMTRRTEEFNRQLREQPADTQLWIKFIRYQDELSSTEFGGEEEQQGSDSAERRKSTYRAVLEKKLSIAERAVDTNPSCIALQLERLRICQELWEPSVLAKEWKKLVFLHPNSAPLLREYLLFMQSYFSNFTVSKVNSAYGKCLSTLSSVRDGSMVSHPALPGIEEDMLDIFTQQCHFLRQSGHSEKAISLFQAMIDFTFYKPDSVRHLSTKQQVEFFEPFWDSGEARVGELGARGWKAWMLQQERGGWLQPNADDEEEEEEDEEEVKDRSQPRGTIWLDVESSRETAHWLPWRPDKAKGQSEEDCEDPDRQVLFDEIGPSLICLSSPELQLRLLLHFLSFLGLPVDSVLSPAPCQPSLLLENLSFLTQGNDLRRPLTSHDQLDPWVTSVGHMTTLQGTRKRVGLGKQGEKFVTNVFNMVLPNLLPHHRAVLSLSWMQYEKLKVLRCLRSGNKKRLRSQGKSSKRVAKRLLKEPDNRSSLVLWREYAHLEWMLGNLDEARKVFSTATAIGGSKGLSSPTLCELCHLWSQLEVEDGAGAQGGGLTDVTTSPAVLILTRVAEGSTTSSSSSSQSFSPVSILKARKSYEQALTASLSALDQVPNNLQTNRKGQDDLLGEKLRLSGLVGCYALFQYLTVGIQAANAVYSQARERMEELHCTLTLDKQFNSNAEANLTSIDARNSAADSSRHYVNKLSSECQVLAVQQAALLRYHNSISVFPLATLRQMLTSALSSWPSSTPLWSIYVQLENRYHSAGRARRFFHSVTRDSSSVVPRLFAIVAEQQRKQLVDAAQRSCCHDSSLPILPENGLSNRIRGLFERAIATEMGAHCPLLWRMYMHFLVSEGKVDKATGIFYKALQNIPWAKGLYMDGVQLFPERLQEFADLMTEKELRLRLPLEELDILLED"
     misc_feature    435..746
                     /gene="nrde2"
                     /note="MTR4-interacting domain (MID) found in nuclear
                     exosome regulator NRDE2 and similar proteins; Region:
                     NRDE2_MID; cd22200"
                     /db_xref="CDD:412062"
     misc_feature    order(435..461,468..473,483..488,492..494,498..542,
                     549..557,561..569,603..611,621..626,630..635,642..662,
                     684..695,717..746)
                     /gene="nrde2"
                     /note="MTR4 binding site [polypeptide binding]; other
                     site"
                     /db_xref="CDD:412062"
     misc_feature    936..1898
                     /gene="nrde2"
                     /note="necessary for RNA interference; Region: NRDE-2;
                     pfam08424"
                     /db_xref="CDD:429988"
ORIGIN      
tttacatgcgacaaaccgtcatggctctgtttccagcgtttggagaaacggcgagtgataaagttgaagattcgtctaaagaattagactggctgaccaataagagttttcagaccaaggatgccctctctcttcacagtcgttttttaggggagaaggagtcaagagtaggcagagaggtgagctctgcagaggaggagaaagaagaagaggacaatgtgccaatcaaaaagaagaaaaggaagagtgaaaagaagaagaaaaagaagaaaaaacacaaaaagaagagtgggaggtgttcagatagcagtggctctgactctgaaaccatctaccccagtgatctcaaaagggaacaagaggaagatagatcacaggctccattagcaagtcgtttctcctggttggatgatctccagtcgccaacagagcatccattctgtgtggactgtaaaccagacccagccaactggacatataagtccctgtacagaggagatgtagcaaggtataagaggaaaggcagctcatcgttgggtctggactctcgcagacagggagtcagctgggaggagtcagagtcaaataagaaacagaaaggtggggacaagaagaaagcagcagacagatacttctctacacttagtcgccagctgctgaggtcagagtccgctgttcctacattactaaggagtcctgattgtagtgatgtcatcagctccacctccttcctccctctgggggatgatgagggggagaacaaaggaggagagacaggtaacagagagcagacatcatcagtaaatccgctcggtgtgtatgactcctccacggccctctgggtgcaggggaagggacagccgggccagacagagcagcagaagcaggacatacagacaggacagagcgccatgcttatgaccaggaggactgaggagtttaacaggcagctcagagaacagccagcagacacacagctgtggataaaattcatacgataccaggatgagctgagttcaacagagtttggaggtgaagaggagcaacagggcagcgattcagctgagcgtcgtaaatctacctaccgagcagtcttggagaaaaagctgagtatcgcggagcgtgctgtggacaccaaccccagctgcatagctctgcagctggagaggctcaggatctgccaagaactctgggaaccgtcagttctggctaaagaatggaagaaactggtgttcctccacccaaacagtgctcccttgttgagggagtacctgctcttcatgcagagctactttagcaacttcactgtgtcaaaggtcaactctgcctatgggaagtgtctaagcacactcagctctgtgcgggacggaagcatggtctctcatccggccctgccagggattgaggaggacatgctagatatcttcacccaacagtgtcattttctgcgtcagtctggtcactcagagaaggcgatttctctgtttcaggccatgattgattttactttctacaaacctgacagtgtccgacatctgtccaccaagcagcaggtggaattctttgagccgttttgggacagtggggaggcacgtgttggggagttgggggccagaggttggaaagcctggatgctccaacaagagcgtgggggatggctacaacccaatgcagatgacgaagaggaggaggaagaggacgaggaggaggtgaaggatcggagtcagcccagagggacaatctggctggatgtggagtcatctcgtgaaacagctcactggttgccctggaggcctgacaaggcaaagggccaatcagaagaggactgtgaggatccagacagacaggtgttatttgatgaaatcggaccatccctaatttgcctgtcctcaccagagctccagcttcgtctccttctccatttcctgtcattcctggggctgcctgtcgactctgtactctctcctgccccctgtcagcccagcctgctgctggagaacctttcttttctcactcagggtaatgatctccggcgtcctctgacctcccacgaccaactggacccctgggttacctctgtaggtcatatgaccactcttcaaggaaccaggaagcgggtagggctcggaaagcagggcgagaagtttgtcaccaatgtgttcaatatggtcttgcccaacctccttccccaccatcgagccgttctgtcactcagctggatgcagtacgagaaactcaaggtcttgcgctgtttgcgcagtggcaacaaaaagcgtctccgttctcaaggcaagagcagcaagcgggttgccaagcggctgctcaaagaacccgacaaccgctcgtcattggtgctgtggcgggaatacgcccacctggagtggatgctgggcaacctggatgaagctcgcaaagtcttctccacagccacagcgatagggggatccaaaggattgagcagccccaccctctgtgagttgtgccacctgtggtcccagctggaggtggaggatggagcaggggcccaaggagggggactaactgatgtaaccacctccccggctgtgttgatactaaccagagtagcagaaggaagcaccacgtcgtcttcttcatcctcccagtccttctctccagtatctatcctgaaagccaggaagtcttatgaacaggctctgacagccagcttgtcagcactggaccaagtccccaacaaccttcagaccaacagaaaaggtcaagatgacctgctgggagagaagctgaggctgagtggtctggtaggctgctacgctctgttccagtacctcacagtgggcatccaagcagctaacgctgtctacagccaggccagagaaaggatggaggagctgcattgcacactaacacttgacaagcagtttaacagtaatgcagaagccaacctcaccagcattgatgctagaaactctgcagctgattccagcaggcactatgttaataagttatcttctgagtgtcaagtattagcagtgcagcaggcagccttgctgaggtaccacaacagcatcagtgtgtttccactggcaacactgagacaaatgctgacctctgccctttcatcctggcccagcagcacccctctctggagcatatatgtacagctggagaaccgttaccatagtgctggcagggcgcgtcggtttttccactctgtaaccagggacagcagcagtgtggtgccacgcctctttgccattgttgctgaacaacaaaggaagcagctggtggacgctgctcagaggtcttgttgccatgacagctccttgcccatcctaccagagaatggcctcagcaaccgtatccgtggactgtttgaacgcgctatagcaacagagatgggtgctcactgtcctttactttggagaatgtacatgcacttcctggtgtcagaagggaaggtggataaagccacagggatcttttacaaggccctacagaatattccctgggccaagggtttgtacatggatggggtacagctgttccctgagcgtctgcaggagtttgcagatctgatgacggagaaagaactcagactcagactgcctttagaggaactggatatactgctggaagactgaacacacacacacacacacacacacacacacacacacacacacacacacacacacacttcattcaagagcttgcgttgagtttgctttactggcaacatgctaacccgtatattggcacacttgatggcaagaatagcagacacacatgcaaactcagatgcctatacggaaagctgctgtactgaaccgtgaagttgtagtgatctcatctgaagatggacaaggagccatcctttgtacataatgtcagaaaatgctttattttctcagcaaatagaactgttttattacctgacattatcaataaatacgattctcagttatttggtgtgtgtgctgtagatttgtttatgcatataaatttaaactgcatgtacactgagatttagggtttgtttcaacacaaattaaatgatgcagctttggtatataacagagtggtgatcatgatcaaatccaacaatcaaatttaaagtgtgagtgttcaaatgcagtttatttaaaagctataactttgggcacacctggctttaagagtctcctggtgataatgaatgatcaatctcaacaaatgatcaagtttataaagttgtctctttccacttggtgctatttgtaagatctgtaagagctgaaattttttttttgaaacgttttttaatcctattgtttcgaagaattacttctcaaagagtcctgcctcattttattgtcctgtatatccacggtttccatatttttgcttgttttttttactcgtatacaccctctgaggctcggggctgtatttgaaaacacacctgtgaaacacctgcaagtttttacctgcctcctccatacatcttattacccacaacacacatacacacacactgcacagtagtgatgtgttggtcacgaatgaaacggctcttagagccggctctttgaagtgaacgacaggagccggctcctgattgggagccgtttttttttttttcatcttctcttttttcctcaagcgtgattgatcaaaatgtgtttgtggcctgtgtttgcactgagtagaggggggaggggcagtagttacactcgcagcagcagtagcacatgaacaggagagcaggaggggcagaaagatagagagccaggggctacaagaaaagaacattgatgcattagaaaggtatagttaagaaaatgagtgaaaccaggaaaagaagcaaaatctggaaccatttcaattatattgataatacaaaggcagagtgtagagtcgaatttccatgtagaatttccacaaacaaactgcacaggcacctgtgaattgtttaaaatttgtttaaaagaaaaaagctgaaagtttaataatttt
//

by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]