2024-03-29 01:44:04, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_041053107 7306 bp mRNA linear VRT 22-APR-2021 DEFINITION PREDICTED: Toxotes jaculatrix argonaute RISC catalytic component 3b (ago3b), transcript variant X1, mRNA. ACCESSION XM_041053107 VERSION XM_041053107.1 DBLINK BioProject: PRJNA723051 KEYWORDS RefSeq. SOURCE Toxotes jaculatrix (banded archerfish) ORGANISM Toxotes jaculatrix Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Carangaria; Carangaria incertae sedis; Toxotidae; Toxotes. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_054406.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Toxotes jaculatrix Annotation Release 100 Annotation Version :: 100 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.6 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..7306 /organism="Toxotes jaculatrix" /mol_type="mRNA" /isolate="fToxJac2" /db_xref="taxon:941984" /chromosome="13" /tissue_type="liver, intestine, and heart used for different sequencing technologies" /dev_stage="adult" /country="Singapore" /lat_lon="1.3521 N 103.8198 E" /collection_date="2019-10-29" /collected_by="Byrappa Venkatesh" gene 1..7306 /gene="ago3b" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 8 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns" /db_xref="GeneID:121191738" CDS 393..3029 /gene="ago3b" /codon_start=1 /product="protein argonaute-3 isoform X1" /protein_id="XP_040909041.1" /db_xref="GeneID:121191738" /translation="
MEIGTTGAVGAQTLFSLPRRPGYGTIGKPIKLLANCFQVEIPKIDVYLYEVDIKPDKCPRRVNREVVDSMVQHFKVTIFGDRLPVYDGKKSLYTANPLPVATGGVDLDVTLPGEGGKDRPFKVTIRFVSLVSWHMLHEVLTGRGVPEPLDLEKPLSTNPVHAVDVVLRHLPSMKYTPVGRSFFSSPEGYDHPLGGGREVWFGFHQSVRPAMWKMMLNIDVSATAFYKAQPVIQFMCEVLDIHNIDEQPRPLTDSHRVKFTKEIKGLKVEVTHCGTMRRKYRVCNVTRRPASLQTFPLQLENGQTVERTVAQYFREKYNLQLKYPHLPCLQVGQEQKHTYLPLEVCNIVAGQRCIKKLTDNQTSTMIKATARSAPDRQEEISRLVRSANYEADPFVQEFQFRVRDEMAQVTGRVLPAPMLQYGGRVSSEPFMPQQINPALSLQNRTVATPSHGVWDMRGKQFHTGVEIKMWAIACFATQRQCREEILKSFTDQLRKISKDAGMPIQGQPCFCKYAQGADSVEPMFRHLKNTYAGLQLIIVILPGKTPVYAEVKRVGDTLLGMATQCVQVKNVVKTSPQTLSNLCLKINVKLGGINNILVPHQRPSVFQQPVIFLGADVTHPPAGDGKKPSIAAVVGSMDAHPSRYCATVRVQRPRQEVIQDLASMVRELLIQFYKSTRYKPTRIIFYRDGVSEGQFRQVLYYELLAIREACISLEKEYQPGITYIVVQKRHHTRLFCADRNERVGRSGNIPAGTTVDTDITHPYEFDFYLCSHAGIQGTSRPSHYHVLWDDNCFTADEFQLLTYQLCHTYVRCTRSVSIPAPAYYAHLVAFRARYHLVDKEHDSAEGSHVSGQSNGRDPQALAKAVQIHHDTLRTMYFA"
misc_feature 609..893 /gene="ago3b" /note="N-terminal domain of argonaute; Region: ArgoN; pfam16486" /db_xref="CDD:435368" misc_feature 921..1073 /gene="ago3b" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:430160" misc_feature 1074..1436 /gene="ago3b" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212" misc_feature order(1230..1232,1275..1277,1317..1319,1329..1331, 1383..1385,1404..1406,1410..1412) /gene="ago3b" /note="nucleic acid-binding interface [nucleotide binding]; other site" /db_xref="CDD:239212" misc_feature 1569..2900 /gene="ago3b" /note="PIWI domain, Argonaute-like subfamily. Argonaute is the central component of the RNA-induced silencing complex (RISC) and related complexes. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the...; Region: Piwi_ago-like; cd04657" /db_xref="CDD:240015" misc_feature order(2034..2036,2046..2048,2082..2093,2100..2102, 2124..2126,2133..2135,2145..2147,2157..2159) /gene="ago3b" /note="5' RNA guide strand anchoring site [active]" /db_xref="CDD:240015" misc_feature order(2238..2240,2244..2246,2454..2456,2868..2870) /gene="ago3b" /note="active site" /db_xref="CDD:240015" ORIGIN
ctcgccgataccgaggaggacgccggggtagtgaacccctcatatcaggttgttaaagaagaacaccggattgtcacgttaagccaccgggacaacgaatacagccactgaccaggtatatgaaagagaactttggaggacgaaagccggtacgtcctgttcaactttgagctgtcagttgcggcaaggcaggtcgggggatacgacttccagccgaggagggggggaccacgaagcggcccgggtgcacatcagccaccgaagtcggggagcggggagccgcggagccgggcagcggcgtgtcggccagaggaactatagggaaagtttgaatccgcgcagaggcagaattgatcactgggtgccgggtcatccggacagagacctcatgaatggaaatcggaacaacaggagccgttggagcccaaaccctgttttcgttgccacggagacctggctatggcaccattgggaagcccatcaagcttctggccaactgcttccaggtggaaatccccaaaatcgacgtctacctgtatgaggtggacatcaaacccgataagtgtccccgcagagtcaacagggaggtggtggactccatggttcagcatttcaaggtgaccatctttggtgaccgtctgccagtttatgatgggaagaaaagcctctacacagctaaccctcttcctgtcgccactggtggggtcgatctggatgtcaccctgccaggcgaaggtgggaaggaccggccatttaaagtcactatcagattcgtgtcgttggtcagctggcacatgctgcacgaagtcttgaccggacgtggtgtgcccgaacctctggacctggagaaacccctcagcactaatcctgttcacgccgtggacgtcgtccttcgacaccttccctccatgaagtacacccctgtcggacgatctttcttctcctccccagagggctatgaccacccgttaggtggaggaagagaggtttggtttggtttccatcagtcagtacggccagccatgtggaaaatgatgctcaatattgatgtgtcggccacagccttttataaagcccagccagtcattcagttcatgtgtgaagtcctggacattcacaacattgacgagcagccccgcccgctcactgactcccacagggtcaagttcaccaaagagatcaaaggtcttaaagtggaagtgacacactgtggaaccatgcgtaggaagtacagagtctgcaatgtaacacgacgccctgccagcctccagacgtttccgctgcagctcgagaatggtcagacggtcgaacgcacggtggcgcagtacttcagagagaagtacaatctgcagctgaagtatccccacctgccttgtctgcaggtgggccaggaacagaagcacacctacctgcccctggaggtgtgcaacattgtcgccggacagcgctgtattaaaaaactgacagataaccagacgtcgaccatgatcaaagcgaccgctcgctctgcaccagacagacaggaggagatcagcaggctggtgcggagtgcaaattacgaggccgacccgttcgtccaggagtttcagttccgtgtgcgagacgagatggctcaggtgacgggccgcgtcctgccggcccccatgctgcagtatggcggcagggtgagctctgaaccatttatgccccagcagatcaaccctgcactgtcgttgcagaaccgcacggtggccacacccagccatggggtgtgggacatgagagggaaacagttccacaccggagtggagatcaagatgtgggctatcgcctgctttgccacccagaggcagtgcagagaagagatcctgaagagcttcactgaccagctgcgtaaaatctcaaaggacgctggtatgccgatccaaggccagccatgcttctgtaaatatgcccagggagctgacagtgtggagccaatgttcagacacctgaaaaacacctacgccgggctgcagctcatcattgtaatcctgcctgggaaaacacctgtctatgctgaagtgaagcgggtgggtgacaccctcctcggcatggccacccagtgtgtccaggtgaagaacgtagtgaagacgtcccctcagaccctctccaacctctgcctcaagatcaacgtcaaactgggaggaatcaacaacatcctggtcccacaccaacggccctctgtgttccagcagcctgtcatcttccttggggctgatgtcactcaccctccagcaggggatgggaaaaaaccatcgattgcagcagtggtgggcagtatggacgcccaccccagcaggtactgtgctacagtgcgggtccagaggcccagacaggaggttatacaggacttggcctctatggtgcgagaactcttgatccagttctacaaatcaacccgctacaagccaaccaggatcatcttctacagggacggagtgtcagagggccagttcagacaggtgctatactatgagctactggccatcagggaggcttgcatcagtctagagaaagagtaccagcctggaattacgtacatcgtggtacagaaacgccatcacacacgcctcttctgcgcagatcgcaacgagcgggttggacgaagtggaaacattcctgctggtaccacagtggacacagacatcacccacccctacgagtttgacttttacctctgcagtcatgctgggatccagggtacgagtcggccttcccactaccacgttctgtgggacgacaactgtttcaccgccgatgaattccagctcctcacataccagctgtgccacacctatgtccgctgcacacggtccgtctccatcccagcacctgcctactacgcccacctggtggcctttcgcgcccgctaccacctggtcgacaaagagcacgacagtgcggagggcagccacgtctcaggtcagagtaacggcagggacccccaggctctggccaaggctgttcagatccaccatgacacattgaggaccatgtactttgcctgaaatccccctctcccagcctctccatcagtcttagggtgtgactccatgctggtgcagctttggtcactggaacgcgatagcgacggcggcagctatttcaggctgtgtaaggatgatagaagccagagaggagttacagccacattatgcaatttgaagccagccagttgtttctgaggtcctacccatgcatcactttttcctccgcatctcttctgctgtatttaaatcacgatgaattctctcttttttttttaaagttcgcttccagatttgacagcagctcaaacttttattttgctgggttttttttgtctgtaaataatggcagagcaggcgagaatatataaactgatgatttgttggtgcatgggtgggaatgaagcagaaccagtgaggacctgacttgctccttagcctcatgttgagcctaatgttgctggtttatattgtagacggttttacatgtttgtttgtttgttttcagctttctagatagctctgtgtgttgtttgtctgttgagcaaatgtgcgattgccatggcaacatgttagtcgagtacactcaaaaagctttgcccttttttgtgaaacggcggactgccttcgtggttactcttctgtctccctttaagccagtggttcctcacagtccttcagccagacagtaagtctgcactctaccaacacagacactgaatgaaatcttaactttttttttttttttttaagaaaagccacgtacagccagtctttgaggcattgtgtatcgcttgttgccttactgcgaggtgaggtgcataaagaggactgttagaaaacaatgccacggccatgaaatggacgatttttaaccgctctaaatcgtagttcagcttggtacagtgtgttataccaaacgtttcttgtgtgttttattcctcttgctatttatgagttgtagtttctttttttgtttgtttttttttttttaacttttaaattaacattcattttccgtgatagaacagaacggacaggttatatcttctgatgaccacaaactttccccccccccccccccccccccaagttttttcagtttttacataagaaactgaccggttcagttgtcaagaactccttcagtgcaataaggtgttaatgcagagagcaggttcggtgccgaatgtttttggacaagtattcgtgtgctaaaacggtttgttgtgagtcagttttggcaagtgacaatgaacttggattcaggaatgtacagtatttgacattctcatgagcaagtaggatcagtgtggatcagtcgtgaggtctaatggtgtgtttggtgagagtaaactaagtgcctaggatggaaggattttaatcgtatgttggtttgagtgcctctgttaacacgtttagtgggtttcagaattccagcaaatgttaaaaatactgcactgcccaacgcttgggcctggacagcacagaggattgttgctgatctgagcacaggccaaatgtgtgtgatcatttttaatgttttctcacgatcgggatttaattatcttctaatttcaacacgtttacagcatcaccatacataacacaaagcttacattgataatgacgttttacaaactgttttctcctgttatcacaacataattcatcatcgtagaagaaaaacaaatattggtcatgagagaaaaataaatcactccttatcacaaaatgattttaagaaaactgtaaactgttttcttataacaagatccaataatgaaaaatcatatttacacaggtttcatcgttcccttagactttctcgtttaaatctcattgacttgtacacttctaatacaatttctctctgaatagccgctcgcatctctgatttgtccaaacagaaataagttaaaattacatttgagtacattatcaggcttaaaatttctcatgatgaagttgcttggttttttttttttcgtgaccaagagaaaacaaaacatatataatcacacacgtgaatgaatttctgaggaggcttgctttgttgtttgtagagctgcaacgaatagtccctaaatcagttagccgattggaacaaaattcatcaggaactattttgataatcgtttaatattttcaggcatttctcaagcaaaatgtcaaaaaatctgctcattccagattctcaaatgtgactattttcctggtttgtttttttttttttttttttttttttggtcagtgaaatatctttgggttttcactgtcagacgagacatctgatgacgtcacttttggctctgggaaactgtgatcggcattttggcttcagttttgtagactaaaggattaattgataatgaaaacaatcattagttgtagcactgctcggttgtgtttgtgttcagaggggttctgagctgggtgtcactactaatgtttcagcaccaaatctggttccagtgcttgaatttaacacagttccaagacaatttttctaaatacatctttgtattttgggattaaacaacgtcattatgcaataaggaacagattcaattcaatacggtgctgttaaagttacttgtaagaatccagttttgaagtttgttaagatctttcggtcattgttgccagaattttagaaacagtgctgctgcttttggatgctcagccccggaggttgttatctttcatgaccttgtagtgtagtttaatacagacgaagccttcatttttcatcacttggaccaaaccaacgtgcctggtcagggtgagggtggaggacttggggtggtggtcatggtgtcaatactcttacagcctttatagcgtcgggctaaaaggctctgtactgctaactgtgctagccacatgtcaccagaaccaaactttagctgctataagagaacatttatttaatatctcatcagatacatatagattgaatttattaatacagagagagactaagaggatatggtattttgctgcacttaaaaagatgcatgtgtttatggttgagtcaagatgctgaggttgagcttgattagatattctttctctccagctctttaaatgtttggagctgcctacgattaaagcatttttaattatgaagacatcagaacagattttttccccctctgtgtttgttgtcatgttggagctgtttcttaatgtcagacattaccagcatttgattttacttgaagaatagttatagtagatgttggcatgtttaacattgttggcttagtgctctgcttgtttttgaaagtttatgtatatagagccttattatggaaatcccttttcctctcatgatgccacttacagtaaatcgacctcgcgagcccgtaggcagggctacagatgccttcttcctgaaaattaaaagcatttttaagtctgaatggagatatatttatatttaaagatactaatgtaatgcacacaccacttattttttctaacaaagtcctatttggagcagaagtgtgatagctctattgaaatatggcgtttaattatcatagtgatctgtgatccaaatttgataatgcaatactcgtgtgaaaagtaaaactgacacgtttttgctgcatcgacctgctttgtggagactgttcggggttgttttgtctcctggatgaaccatcaaccctcctcggcaaagacgacctgagaaggcctccctctactttaacattttatcatctcagaagctcatcaaaggagttaaatatgtttctcaatgcacgtgctgcaaatcgcatcaacatttctttctattgcatattcatgaaaagatgaggagggttgaaagttcatccttggaccgattttgtccgttaacagactgtgcctttcctgatggtgctgaaaaacaacaacaagtaaatcaaagaaatcttgacattcagaaagggcgccgagccctgagtctacattaataagtatatattgatacatgacaatactgtaaggtgtgattgtgtgtgtgtgtgtgtatttgtgtgtgagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtggatacctctgacatatgccaagaacacaaaatatgcagaactgatcagtttggagccgacaggaccaaaaggcctgtggggatcagttttagtggacgggcactttcaagcacaacccaaaaatttacttttctgaataaaaaaaaaaaataataatactaggggaacactcatgactctgtagggaaggagaagctcaatgtagacattatgtag
//
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@meso_cacase at
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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