2024-04-25 22:47:36, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_038730160 3757 bp mRNA linear VRT 30-DEC-2020 DEFINITION PREDICTED: Micropterus salmoides arrestin red cell-like (LOC119911316), mRNA. ACCESSION XM_038730160 VERSION XM_038730160.1 DBLINK BioProject: PRJNA687018 KEYWORDS RefSeq. SOURCE Micropterus salmoides (largemouth bass) ORGANISM Micropterus salmoides Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Centrarchiformes; Centrarchoidei; Centrarchidae; Micropterus. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_024041150.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Micropterus salmoides Annotation Release 100 Annotation Version :: 100 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.5 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3757 /organism="Micropterus salmoides" /mol_type="mRNA" /isolate="LMB-PRFRI" /db_xref="taxon:27706" /chromosome="Unknown" /sex="female" /tissue_type="blood" /dev_stage="adult" /ecotype="aquatic" gene 1..3757 /gene="LOC119911316" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 51 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 89 samples with support for all annotated introns" /db_xref="GeneID:119911316" CDS 128..1360 /gene="LOC119911316" /codon_start=1 /product="arrestin red cell-like" /protein_id="XP_038586088.1" /db_xref="GeneID:119911316" /translation="
MGDKAGTRVFKKSSPNDKLTVYLGKRDFVDHLDHVDPVDGMLLVDPEYLKGRKVFVTLTCAFCYGREDLDVLGLSFRKDLYVSTVQVFPPLQEEKKPLSHLQERLLKKLGHRAYPFNFTIPQNLPCSVTLQPGPEDTGKACGVNYELRAFCAKTVEEKIHQRNSVHLVIRKVQYAPEKPGPQPMMETSRSFLMSDRALHLEASLDKELYYHGEPISVNVHVTNNSSKTVKRVKISVRQYADICLFSTAQYKCPVAQVEADHQVSPSSTSCQVYSLTPVLGINREKRGLALDGKLKHEDTNLASSTIVKEGTNKEMMGIMVSYRVKVKLVVSLGGDVAVELPFVLMHPKPIDQPSSQPQSIAPEADAPVDTNLIEFDMHTSSQADDFVFEDFARLRLTGMMDDKDEDKPFC"
misc_feature 182..652 /gene="LOC119911316" /note="Arrestin (or S-antigen), N-terminal domain; Region: Arrestin_N; pfam00339" /db_xref="CDD:425619" misc_feature 707..1174 /gene="LOC119911316" /note="Arrestin (or S-antigen), C-terminal domain; Region: Arrestin_C; smart01017" /db_xref="CDD:214976" ORIGIN
tgtttttttgtctctaagctccggaaacaggctgaatgatcccaaaaagttggcaagaacagcgaacagcccggaccagcacagacagcagaccagcacatcggcgactgtccacaggaccgaggagatgggggacaaagcggggaccagagtctttaagaagtcgagtccgaacgacaagctcactgtttatcttggaaagcgagactttgttgatcacttagaccacgtagatccagtagatggaatgctccttgtagacccagagtatctgaaaggtcgaaaagtgtttgtgactctgacctgtgcgttttgttacggtcgggaggacctggatgtcctaggcctttccttccgtaaagatctgtatgtcagcaccgtccaggtctttcctcctctgcaggaggaaaagaagcctctgagccacctgcaggagaggctgctgaagaagctgggtcatcgtgcctaccccttcaacttcactatcccccagaacctgccttgctcagtgaccctccagccaggtccagaggacactgggaaggcatgtggtgtgaactatgagcttcgagcattctgtgccaagactgtggaggagaagatccatcaaaggaactctgtgcatctggtgatcaggaaagttcagtacgccccagagaagccaggtccacagccgatgatggagaccagtcgcagcttcctgatgtctgatagagctttacacctagaggcctcattggataaggagctgtactaccacggtgagcccatcagtgtcaatgtccatgtcaccaacaactcttctaagactgtcaaaagggtgaagatatctgttcgtcagtatgctgatatttgtctgttctccaccgctcagtataagtgcccagttgcccaggttgaagcagaccaccaggtttctcccagctccacctcctgccaggtctactctctgacccccgtgctgggtataaacagggaaaagagaggcctggccctggatggaaagctgaagcatgaagacaccaacctggcctccagcaccatagtaaaagaagggaccaacaaggagatgatgggcatcatggtttcctacagagtcaaagtcaaactggtggtgtctcttgggggggatgtagcagtggaacttccttttgtcctgatgcatcccaaacctatagaccagcccagctcccaaccacagtcaattgctccagaggctgatgctcctgtggatacaaacctcatagagtttgacatgcatacttcctctcaggctgatgactttgtgtttgaagattttgctcgtctgcggttgacagggatgatggatgacaaggatgaggacaaacccttctgttagctcctcctccttcagcatcagttacttgtctgagcgaaaggttacaagccactcaaccaagaacccaagaagaagaaaatgagcagacggccagatgtgtgaggacaacctctggaatcttgccacatgctttgattgtaccatttactctgtatgggctatggtatatgtctgttgtttaaggagcagccaacaaaaaatcagctgcttggtgtcttacacatatagacctatcataacataaatgacaggtcacttgttgttttcaggtatcagtgaaaccgctaaaagctatgacagaggaacctaacttttattgcttcctattgatttgtccttcacctctttatactcaagtaaatcgagtgcatttttatgactgcaccggccacagctgtggctggaggctgtatgttttcaggttgtctgttatctgtccgtcccattcttgtttttcagatgtggtgcaaacatccacttaaactaaagcatgaactgagttcattgagtttggtggtcaaaggtcaaggtcactgtgacctcacgcctgtcccattcacgtgaacgtggtatctcaggaatacctggagggaagtggcacaaacgtccactctgactccagaatgaagtgattttagtggtctacgctccactttattacattattcaacaccataactcaggaacagaaggtatgattgtcaccatatttcacagtgggttggacactgaataggtaacacttttgactgaaaggtcaaaggtcattgtgaccttaaaatacatttacacattttgggtagcactactctgtaagaacccatctttacatagtaatcgaatttatgtgtaccttttcaaccaatacatctatgaatagttccacaatgtatatttactggtatcatatcataaatatagtagtataattaccttttttcaaatcctagtattaagtaagtaagtatttactgcatctatgagtctggacacatagatggaaactacaactcactggttggccgaggcatacaattgcggcagttctggttatatttggatcagaaaaagctagagttaaatttgtaaacaggaatgattttattttagtagttatttttgctaatatatatttcccttatctcaagttggatggaacagatatcaataggtgaactaactgaaacaaattcccatcatgcatacagatttttaatgtctgttgaacagccaggagttgtttgactctagctttggccttccagtgcgagatcaactcttctttagtgcacctccaaaaaatacagtagtattctgatgattagtgtgtagttagtatgcttttccaggtccaaaattgtaaagtgaaaggggtacactgattttcacttatttgagacattctcgtgctaggtgcacagtgcctcgtgtctctcctggatctacacacaatcctaatgcccagtatgtacaagttgtaagtatgtaaggcctgtgtcccaaatgcatacaatttactcctatatatgaccacattttgaatacgcagtttgttctcactggcaaataaaaaataaacacttacaaatgctgcttaacaaacagtagttgtttttttacatttggttaaatttaagaattgtaaccaatgcagagcctgccagtttatcattagggctatactctcatgtaatccttctgtaggatagaattgggacacattgtaggaccatagtgtgtatacaaaaacttttagctagagccatcagtatacatgcgttattctgtcaaaataatttaacatgtaagttgactagctagacaatcaaccacatattcactggactttttaacagtattcttttttcttggtctctatgcatcttacttgagctgttaattacaatgaaaaagagacagtgtctcagctgggcacaaagtctttcctgtgtcctgagttaagctcttgtgtttttgtatcaatgaagatgaatgatgatgattatgaatgagtcagatttttccccaaagagttctaaatatgagctgtataagtgtaagatactacagctattatcattataatctattgaaatttgaaatatagttacgtaaacatattgcaagatctaccgtgaattggatttattttattctgcgtgggtttcgtccgggtgctccggttccccaccatcaaaaacatattcttcagtcagtgccaatgatcagacaatgatatagatctggagttggtccccgggcgctgcacagtggctgcccactgctctcttgaagaatgggttaaatgcagagaatgaattgcgctacatgtgtgtatgtcacaataaagtcccttcacctacgttattttaaaatgaaataaaatgttcaaataat
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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