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2024-04-25 22:47:36, GGRNA.v2 : RefSeq release 222 (Jan, 2024)

LOCUS       XM_038730160            3757 bp    mRNA    linear   VRT 30-DEC-2020
DEFINITION  PREDICTED: Micropterus salmoides arrestin red cell-like
            (LOC119911316), mRNA.
ACCESSION   XM_038730160
VERSION     XM_038730160.1
DBLINK      BioProject: PRJNA687018
KEYWORDS    RefSeq.
SOURCE      Micropterus salmoides (largemouth bass)
  ORGANISM  Micropterus salmoides
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Actinopterygii; Neopterygii; Teleostei; Neoteleostei;
            Acanthomorphata; Eupercaria; Centrarchiformes; Centrarchoidei;
            Centrarchidae; Micropterus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_024041150.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Micropterus salmoides Annotation
                                           Release 100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.5
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3757
                     /organism="Micropterus salmoides"
                     /mol_type="mRNA"
                     /isolate="LMB-PRFRI"
                     /db_xref="taxon:27706"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /ecotype="aquatic"
     gene            1..3757
                     /gene="LOC119911316"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 51 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 89 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:119911316"
     CDS             128..1360
                     /gene="LOC119911316"
                     /codon_start=1
                     /product="arrestin red cell-like"
                     /protein_id="XP_038586088.1"
                     /db_xref="GeneID:119911316"
                     /translation="
MGDKAGTRVFKKSSPNDKLTVYLGKRDFVDHLDHVDPVDGMLLVDPEYLKGRKVFVTLTCAFCYGREDLDVLGLSFRKDLYVSTVQVFPPLQEEKKPLSHLQERLLKKLGHRAYPFNFTIPQNLPCSVTLQPGPEDTGKACGVNYELRAFCAKTVEEKIHQRNSVHLVIRKVQYAPEKPGPQPMMETSRSFLMSDRALHLEASLDKELYYHGEPISVNVHVTNNSSKTVKRVKISVRQYADICLFSTAQYKCPVAQVEADHQVSPSSTSCQVYSLTPVLGINREKRGLALDGKLKHEDTNLASSTIVKEGTNKEMMGIMVSYRVKVKLVVSLGGDVAVELPFVLMHPKPIDQPSSQPQSIAPEADAPVDTNLIEFDMHTSSQADDFVFEDFARLRLTGMMDDKDEDKPFC"
     misc_feature    182..652
                     /gene="LOC119911316"
                     /note="Arrestin (or S-antigen), N-terminal domain; Region:
                     Arrestin_N; pfam00339"
                     /db_xref="CDD:425619"
     misc_feature    707..1174
                     /gene="LOC119911316"
                     /note="Arrestin (or S-antigen), C-terminal domain; Region:
                     Arrestin_C; smart01017"
                     /db_xref="CDD:214976"
ORIGIN      
tgtttttttgtctctaagctccggaaacaggctgaatgatcccaaaaagttggcaagaacagcgaacagcccggaccagcacagacagcagaccagcacatcggcgactgtccacaggaccgaggagatgggggacaaagcggggaccagagtctttaagaagtcgagtccgaacgacaagctcactgtttatcttggaaagcgagactttgttgatcacttagaccacgtagatccagtagatggaatgctccttgtagacccagagtatctgaaaggtcgaaaagtgtttgtgactctgacctgtgcgttttgttacggtcgggaggacctggatgtcctaggcctttccttccgtaaagatctgtatgtcagcaccgtccaggtctttcctcctctgcaggaggaaaagaagcctctgagccacctgcaggagaggctgctgaagaagctgggtcatcgtgcctaccccttcaacttcactatcccccagaacctgccttgctcagtgaccctccagccaggtccagaggacactgggaaggcatgtggtgtgaactatgagcttcgagcattctgtgccaagactgtggaggagaagatccatcaaaggaactctgtgcatctggtgatcaggaaagttcagtacgccccagagaagccaggtccacagccgatgatggagaccagtcgcagcttcctgatgtctgatagagctttacacctagaggcctcattggataaggagctgtactaccacggtgagcccatcagtgtcaatgtccatgtcaccaacaactcttctaagactgtcaaaagggtgaagatatctgttcgtcagtatgctgatatttgtctgttctccaccgctcagtataagtgcccagttgcccaggttgaagcagaccaccaggtttctcccagctccacctcctgccaggtctactctctgacccccgtgctgggtataaacagggaaaagagaggcctggccctggatggaaagctgaagcatgaagacaccaacctggcctccagcaccatagtaaaagaagggaccaacaaggagatgatgggcatcatggtttcctacagagtcaaagtcaaactggtggtgtctcttgggggggatgtagcagtggaacttccttttgtcctgatgcatcccaaacctatagaccagcccagctcccaaccacagtcaattgctccagaggctgatgctcctgtggatacaaacctcatagagtttgacatgcatacttcctctcaggctgatgactttgtgtttgaagattttgctcgtctgcggttgacagggatgatggatgacaaggatgaggacaaacccttctgttagctcctcctccttcagcatcagttacttgtctgagcgaaaggttacaagccactcaaccaagaacccaagaagaagaaaatgagcagacggccagatgtgtgaggacaacctctggaatcttgccacatgctttgattgtaccatttactctgtatgggctatggtatatgtctgttgtttaaggagcagccaacaaaaaatcagctgcttggtgtcttacacatatagacctatcataacataaatgacaggtcacttgttgttttcaggtatcagtgaaaccgctaaaagctatgacagaggaacctaacttttattgcttcctattgatttgtccttcacctctttatactcaagtaaatcgagtgcatttttatgactgcaccggccacagctgtggctggaggctgtatgttttcaggttgtctgttatctgtccgtcccattcttgtttttcagatgtggtgcaaacatccacttaaactaaagcatgaactgagttcattgagtttggtggtcaaaggtcaaggtcactgtgacctcacgcctgtcccattcacgtgaacgtggtatctcaggaatacctggagggaagtggcacaaacgtccactctgactccagaatgaagtgattttagtggtctacgctccactttattacattattcaacaccataactcaggaacagaaggtatgattgtcaccatatttcacagtgggttggacactgaataggtaacacttttgactgaaaggtcaaaggtcattgtgaccttaaaatacatttacacattttgggtagcactactctgtaagaacccatctttacatagtaatcgaatttatgtgtaccttttcaaccaatacatctatgaatagttccacaatgtatatttactggtatcatatcataaatatagtagtataattaccttttttcaaatcctagtattaagtaagtaagtatttactgcatctatgagtctggacacatagatggaaactacaactcactggttggccgaggcatacaattgcggcagttctggttatatttggatcagaaaaagctagagttaaatttgtaaacaggaatgattttattttagtagttatttttgctaatatatatttcccttatctcaagttggatggaacagatatcaataggtgaactaactgaaacaaattcccatcatgcatacagatttttaatgtctgttgaacagccaggagttgtttgactctagctttggccttccagtgcgagatcaactcttctttagtgcacctccaaaaaatacagtagtattctgatgattagtgtgtagttagtatgcttttccaggtccaaaattgtaaagtgaaaggggtacactgattttcacttatttgagacattctcgtgctaggtgcacagtgcctcgtgtctctcctggatctacacacaatcctaatgcccagtatgtacaagttgtaagtatgtaaggcctgtgtcccaaatgcatacaatttactcctatatatgaccacattttgaatacgcagtttgttctcactggcaaataaaaaataaacacttacaaatgctgcttaacaaacagtagttgtttttttacatttggttaaatttaagaattgtaaccaatgcagagcctgccagtttatcattagggctatactctcatgtaatccttctgtaggatagaattgggacacattgtaggaccatagtgtgtatacaaaaacttttagctagagccatcagtatacatgcgttattctgtcaaaataatttaacatgtaagttgactagctagacaatcaaccacatattcactggactttttaacagtattcttttttcttggtctctatgcatcttacttgagctgttaattacaatgaaaaagagacagtgtctcagctgggcacaaagtctttcctgtgtcctgagttaagctcttgtgtttttgtatcaatgaagatgaatgatgatgattatgaatgagtcagatttttccccaaagagttctaaatatgagctgtataagtgtaagatactacagctattatcattataatctattgaaatttgaaatatagttacgtaaacatattgcaagatctaccgtgaattggatttattttattctgcgtgggtttcgtccgggtgctccggttccccaccatcaaaaacatattcttcagtcagtgccaatgatcagacaatgatatagatctggagttggtccccgggcgctgcacagtggctgcccactgctctcttgaagaatgggttaaatgcagagaatgaattgcgctacatgtgtgtatgtcacaataaagtcccttcacctacgttattttaaaatgaaataaaatgttcaaataat
//

by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]