2024-04-19 13:04:36, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_037780751 5952 bp mRNA linear VRT 19-NOV-2020 DEFINITION PREDICTED: Sebastes umbrosus CD209 antigen-like protein C (LOC119494690), transcript variant X1, mRNA. ACCESSION XM_037780751 VERSION XM_037780751.1 DBLINK BioProject: PRJNA675852 KEYWORDS RefSeq. SOURCE Sebastes umbrosus (honeycomb rockfish) ORGANISM Sebastes umbrosus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Perciformes; Scorpaenoidei; Sebastidae; Sebastinae; Sebastes. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_051277.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Sebastes umbrosus Annotation Release 100 Annotation Version :: 100 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.5 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..5952 /organism="Sebastes umbrosus" /mol_type="mRNA" /isolate="fSebUmb1" /db_xref="taxon:72105" /chromosome="9" /sex="male" /tissue_type="muscle" /dev_stage="adult" /country="USA: California coast" /lat_lon="33.599833 N 118.265167 W" /collection_date="05-Oct-2017" /collected_by="University of Washington" gene 1..5952 /gene="LOC119494690" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 7 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns" /db_xref="GeneID:119494690" CDS 138..4640 /gene="LOC119494690" /codon_start=1 /product="centromere-associated protein E-like isoform X1" /protein_id="XP_037636679.1" /db_xref="GeneID:119494690" /translation="
MELMEVDDDELHVNKNLTMGGLVTSVDFQRKKKPSRCASVCLGLLCAVLLAGNIGQFVYYEIISRFSSADPTQASYIQGGQLQSSYDALTAERKQLDARLTNLTKEKDLWQQSYSSLTTERDEFKASFNNLKNESDQLQVSYNTLKLESDQLQTYHTNLTASKDQLQTMYSSLQREKDELQTNKDQLQTKHSSLQREKDELQTNKDQLQTKHSSLQREKDELQTNKDQLQTSYSSLQREKEELQTLSVTLRANRDQLQSNYSSLKTNKDQLQRSYDTLSISRNHIQTSYNSLQKDKERLQSSYNTMQKEKEQLQKSYSSLTTERDDFKASFNNLKNESDQLQVSYNTLKLESDQLQTYHTNLTASKDQLQTKHSSLQREKDELQTLSVTLRANRDQLQSNYSSLKTNKDQLQRSYDTLSISKNHIQTSYNSLQKDKERLQSSYNTLQKEKEQLQQSYSSLTTERDDFKTSSNNLKNERNQLRARYNTLKQESDQLQTNKDQLQTKYSSLQRQKDELQTLSVMLRANRDQLQSNYSSLKMNKDQLQRSYNTLNMSRNLIQTSYNSLQKDKERLQSSYNSLQKEKEQLQQSYSSLTTERDDFKTSSNNLKNERDQLQARYNTLKQESNQLQTNKDQLQTNYSSLQREKEELQTLSVTLRANRDQLQSNYSSLKTNKDQLQRSYDTLSISRNHIQTSYNSLQKDKEQLQSSYNTMQKEKEQLQKSYSSLTTERDDFKASFNNLKNESDQLQVSYNTLKLESDQLQTYHTNLTASKDQLQTKHSSLQREKEELQTLSVTLRANRDQLQSNYSSLKTNKDQCQRSYDTLSISRNHIQTSYNSLQKDKERLQSSYNTMQKEKEQLQKSYSSLTTERDDFKASFNNLKNESDQLQVSYNTLKLESDQLQTYHTNLTASKDQLQTKHSSLQREKDELQTLSVTLRANRDQLQNNYSSLKTNKDQLQRSYDTLSISKNHIQTSYNSLQKDKERLQSSYNSLQKEKEQLQQSYSSLTTERDDFKTSSNNLKNERDQLQARYNTLKQESDQLQTNKDQLQTKYSSLQRQKDELQTLSVMLRANRDQLQSNYSSLKMNKDQLQRSYNTLNMSRNLIQTSYNSLQKDKERLQSSYNSLQKEKEQLQQSYSSLTTERDDFKTSSNNLKNERDQLQARYNTLKQESNQLQTNKDQLQTKYSSLQRQKDELQTNKDQLQTRYSSLQRQKDELQTNKDQLQTRYSSLQRQKDELQTNKDQLQTRYSSLQRQKDELQTNKDQLQTRYSSLQREKDTLQTLSVMLKANRDLLQRNYSSLKINKDQLQRSYNTLSLSKMSLQTRYNSLEKDKERLQSSYNTRQREKEQLQTKYTSLAAARDQLQKKIDKVRAKPCQTGWSKFDISCYLVSNLEKDWKESRQYCITMGADLVVIDSRDEQAFVNGLLDQGQNAWTGMTDSIIEGRWMWVDGTPVTTTYWGENQPNSYDGNQDCGETVQRSSGVGDWNDDGCFGDQNFICEK"
misc_feature 393..2504 /gene="LOC119494690" /note="Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]; Region: Smc; COG1196" /db_xref="CDD:224117" misc_feature 1557..4181 /gene="LOC119494690" /note="Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]; Region: Smc; COG1196" /db_xref="CDD:224117" misc_feature 4260..4637 /gene="LOC119494690" /note="C-type lectin-like domain (CTLD) of the type found in human dendritic cell (DC)-specific intercellular adhesion molecule 3-grabbing non-integrin (DC-SIGN) and the related receptor, DC-SIGN receptor (DC-SIGNR); Region: CLECT_DC-SIGN_like; cd03590" /db_xref="CDD:153060" misc_feature order(4428..4430,4521..4523,4527..4529,4545..4547, 4563..4568,4593..4604) /gene="LOC119494690" /note="carbohydrate binding site; other site" /db_xref="CDD:153060" misc_feature order(4449..4451,4461..4463,4530..4532,4545..4550) /gene="LOC119494690" /note="calcium binding site 1 [ion binding]; other site" /db_xref="CDD:153060" misc_feature order(4461..4463,4548..4550) /gene="LOC119494690" /note="calcium binding site 3 [ion binding]; other site" /db_xref="CDD:153060" ORIGIN
ctcttttctgcacaataaatatcactgcatattagtttctgatgtgtttgttgtaaatcagcagcatcttcatgtgaatgcagtcatactggtactgacttcttctctgatccaagggaaaacagacctttatcagaatggagttaatggaagttgatgacgatgagctacatgtgaataagaacctcacaatgggaggcctcgttacctcagttgattttcagaggaagaagaagccctctagatgtgcgtccgtgtgtcttggattactgtgtgctgtcctgttggctggtaacataggacagtttgtctactatgagataatcagccgcttctcgtcagcagacccaacgcaggccagctacattcaaggaggtcaactgcagagcagctatgatgctttaacagcagagagaaaacaattggatgccagactgactaacctgactaaagaaaaagacctgtggcagcaaagctacagctctttgactactgaaagagatgagttcaaggccagtttcaacaatctgaaaaatgagagcgaccagttacaagtaagttacaacactttaaaactagagagcgatcagttacagacttatcacactaatctgacagcaagtaaagaccagctacagaccatgtacagtagccttcaaagagaaaaagatgagttacagactaataaagaccagctacagaccaagcacagtagccttcaaagagaaaaagatgagttacagactaataaagaccagctacagaccaagcacagtagccttcaaagagaaaaagatgagttacagactaataaagaccagctacagactagttacagtagcctgcaaagagaaaaagaagagttacagactttgtctgttacgctgagagcaaacagagatcaattgcagagcaattactcttcactgaagacgaacaaggaccagttgcaaagaagctatgacacactgagtataagtaggaatcacattcagactagctacaattcattgcagaaagacaaagaacgattgcagtccagctataatacaatgcagaaggagaaagagcagttacagaaaagttacagttctttgactactgaaagagatgacttcaaggccagtttcaacaatctgaaaaatgagagcgaccagttacaagtaagttacaacaccttaaaactagagagcgatcagttacagacttatcacactaatctgacagcaagtaaagaccagctacagaccaagcacagtagccttcaaagagaaaaagatgagttacagactttgtctgttacgctgagagcaaacagagatcagttgcagagcaattactcttcactgaagacgaacaaggaccagttgcaaagaagctatgatacactgagtataagtaagaatcacattcagaccagctacaattcattgcagaaagacaaagaacgattgcagtcgagttataatactctgcagaaggaaaaagaacagttacagcaaagttatagttctttgactactgaaagagatgacttcaagaccagttccaacaatctgaaaaacgagaggaaccagttacgagcacgttacaacaccttaaaacaagagagcgatcagttacagactaataaagaccagctacagaccaagtacagtagcctgcaaagacaaaaagatgagttacagactttgtctgttatgctgagagcaaatagagatcagttgcagagcaattactcctcactgaagatgaacaaggaccagttgcaaagaagctataacacactgaatatgagcaggaatctcattcagaccagctacaattcattgcagaaagacaaagaacgattgcagtcgagttataattctctgcagaaggaaaaagaacagttacagcaaagttacagttctttgactactgaaagagatgacttcaagaccagttccaacaatctgaaaaacgagagggaccagttacaagcacgttacaacaccttaaaacaagagagcaatcagttacagactaataaagaccagctacagaccaattacagtagcctgcaaagagaaaaagaagagttacagactttgtctgttacgctgagagcaaacagagatcagttgcagagcaattactcttcactgaagacgaacaaggaccagttgcaaagaagctatgacacactgagtataagtaggaatcacattcagactagctacaattcattgcagaaagacaaagaacaattgcagtccagctataatacaatgcagaaggagaaagagcagttacagaaaagttacagttctttgactactgaaagagatgacttcaaggccagtttcaacaatctgaaaaatgagagcgaccagttacaagtaagttacaacaccttaaaactagagagcgatcagttacagacttatcacactaatctgacagcaagtaaagaccagctacagaccaagcacagtagccttcaaagagaaaaagaagagttacagactttgtctgttacgctgagagcaaacagagatcagttgcagagcaattactcttcactgaagacgaacaaggaccagtgccaaagaagctatgacacactgagtataagtaggaatcacattcagactagctacaattcattgcagaaagacaaagaacgattgcagtccagctataatacaatgcagaaggagaaagagcagttacagaaaagttacagttctttgactactgaaagagatgacttcaaggccagtttcaacaatctgaaaaatgagagcgaccagttacaagtaagttacaacaccttaaaactagagagcgatcagttacagacttatcacactaatctgacagcaagtaaagaccagctacagaccaagcacagtagccttcaaagagaaaaagatgagttacagactttgtctgttacgctgagagcaaacagagatcagttgcagaacaattactcttcactgaagacgaacaaggaccagttgcaaagaagctatgatacactgagtataagtaagaatcacattcagaccagctacaattcattgcagaaagacaaagaacgattgcagtcgagttataattctctgcagaaggaaaaagaacagttacagcaaagttacagttctttgactactgaaagagatgacttcaagaccagttccaacaatctgaaaaacgagagggaccagttacaagcacgttacaacaccttaaaacaagagagcgatcagttacagactaataaagaccagctacagaccaagtacagtagcctgcaaagacaaaaagatgagttacagactttgtctgttatgctgagagcaaatagagatcagttgcagagcaattactcctcactgaagatgaacaaggaccagttgcaaagaagctataacacactgaatatgagcaggaatctcattcagaccagctacaattcattgcagaaagacaaagaacgattgcagtcgagttataattctctgcagaaggaaaaagaacagttacagcaaagttacagttctttgactactgaaagagatgacttcaagaccagttccaacaatctgaaaaacgagagggaccagttacaagcacgttacaacaccttaaaacaagagagcaatcagttacagactaataaagaccagctacagaccaagtacagtagcctgcaaagacaaaaagatgagctacagactaataaagaccagctacagaccaggtacagtagcctgcaaagacaaaaagatgagctacagactaataaagaccagctacagaccaggtacagtagcctgcaaagacaaaaagatgagctacagactaataaagaccagctacagaccaggtacagtagcctgcaaagacaaaaagatgagctacagactaataaagaccagctacagaccaggtacagtagcctgcaaagagaaaaagatacattacagactttgtctgttatgctgaaagcaaacagagatctgttgcagagaaattactcttcactgaagataaacaaggaccagttgcaaagaagctataacacactgagtttaagtaagatgtcccttcagaccagatacaattcattggagaaagacaaagaacgattgcagtcgagttataatactcggcagagggaaaaagagcagttgcagaccaaatacaccagtttggctgcagctagagatcagctacagaagaagatcgacaaagtgagagctaaaccctgtcagacaggctggagtaagttcgacatcagctgttaccttgtttcaaatttggagaaagactggaaggaaagccgacaatactgcatcacaatgggagcagatctagtcgtcatagacagcagggatgaacaggcatttgtcaacgggttactggatcaaggccaaaatgcatggactggtatgactgacagtattatagaaggaagatggatgtgggtggacgggactccagtcaccactacgtactggggggagaaccagcccaacagctacgatgggaaccaggactgtggagaaactgtgcaaaggtcatcgggagttggagattggaacgatgacggctgttttggtgatcagaactttatctgtgagaaataatatcacaatgatttacacagttaatgatggtgtgttggactgcagttctaatgtacatcataactaattgattctttgtattaatccgcagctgaaaatagtccccaacaaatacagtgtttactccagtttgctaaaatctacaatgctccactgttttaggaaattactgagccttttttgaaaatgatggtatacatttatggctgtttttaaagattttcatcttcagtgggaactccatggactttcagaaagtgctgagagatggacgtacacattgggggatgttcttttcatgggatttgtagacaataacaaaagtatatgataatctcaggtttattctttgatactgttaaaggctgttttcagttaatctggctgattagacctcttctcaggactgtgtgggcgtgtatagactattgagtcacatcttcctgattctcctgttagccttgttgaacctgttaaggcgggataaattacacctttatcattcttattggtcgatgaagatttttgacctaataaatccccatcaaagctccggcccaccttcaacctgagcagaggtctaatcagacagaataactgaaatcacttgtgtgggtgttcagaggctttaaaggtcggttcacccaaattacaatcgaacatatttctcatatttccacacctctagtggacatgtacgatatctatctctgagatttctgcctccagacagccaagtcttaatatattaaactttttaagctttaatgattttagacgagtacactttgatgcataacattgttaacatgttcataaatgtactatttagctgatgatttgtgtttgatgtaatggaatatgaatttcttggttgtacaaaaacgggttttactatgtgttaccgtgtgctcatctgagtgtgctacatcagattcagcaaacactcctaacttcagataactgtgtaaatgcgtaaacatgatgaatgccacctgtgtgtaaataagcgctcgttcatgagaattgtaaattaacataattaacacaccaatgataccaagtatgaatctgtttgtacgagtggtttttgaggccaattgtctagtactctactatgatattctgtggcctttggcatagctttagaaatgtgtgcaaattgccatttgtttgattaatgaaattgtatgaaaattaatgtataacacaaataatgtatgttacaaagcacatgcatacaacatttgcatatggttttaataatttactgtatcactctgtaatgattaaaaaatactggcacaaatta
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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