LOCUS       XM_035628232            3388 bp    mRNA    linear   VRT 01-APR-2022
DEFINITION  PREDICTED: Scophthalmus maximus protein argonaute-3 (LOC118302226),
            transcript variant X3, mRNA.
ACCESSION   XM_035628232
VERSION     XM_035628232.2
DBLINK      BioProject: PRJNA821077
KEYWORDS    RefSeq.
SOURCE      Scophthalmus maximus (turbot)
  ORGANISM  Scophthalmus maximus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Actinopterygii; Neopterygii; Teleostei; Neoteleostei;
            Acanthomorphata; Carangaria; Pleuronectiformes; Pleuronectoidei;
            Scophthalmidae; Scophthalmus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_061515) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Apr 1, 2022 this sequence version replaced XM_035628232.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Scophthalmus maximus Annotation
                                           Release 101
            Annotation Version          :: 101
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 9.0
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3388
                     /organism="Scophthalmus maximus"
                     /mol_type="mRNA"
                     /strain="ysfricsl-2021"
                     /db_xref="taxon:52904"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="muscle"
     gene            1..3388
                     /gene="LOC118302226"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 4 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 59 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:118302226"
     CDS             890..3388
                     /gene="LOC118302226"
                     /codon_start=1
                     /product="protein argonaute-3 isoform X3"
                     /protein_id="XP_035484125.1"
                     /db_xref="GeneID:118302226"
                     /translation="

MEIGTTGAVGAQSLFSMPRRPGYGTMGKPIKLLANCFQVEIPKMDVYLYEVDIKPDKCPRRVNREVVDSMVQHFKVTIFGDRRPVYDGKRSLYTANPLPVAPAGVDLDVTLPGEGGKDRPFKVSIKFVSLVSWHMLHEVLTGRSMPEPLELDKPISTNPVHAVDVVLRHLPSMKYTPVGRSFFSAPEGYDHPLGGGREVWFGFHQSVRPAMWKMMLNIDVSATAFYKAQPVIQFMCEVLDIHNIDEQPRPLTDSHRVKFTKEIKGLKVEVTHCGTMRRKYRVCNVTRRPASHQTFPLQLENGQTVERTVAQYFREKYNLQLKYPHLPCLQVGQEQKHTYLPLEVCNIVAGQRCIKKLTDNQTSTMIKATARSAPDRQEEISRLVRSANYEADPFVQEFQFKVRDEMAHVTGRVLPAPMLQYGGRVSTEHFMNRTVATPSHGVWDMRGKQFHTGVEIKMWAIACFATQRQCREEILKGFTDQLRKISKDAGMPIQGQPCFCKYAQGADSVEPMFRHLKNTYAGLQLIIVILPGKTPVYAEVKRVGDTLLGMATQCVQVKNVVKTSPQTLSNLCLKINVKLGGINNILVPHQRPSVFQQPVIFLGADVTHPPAGDGKKPSIAAVVGSMDAHPSRYCATVRVQRPRQEVIQDLASMVRELLIQFYKSTRYKPTRIIFYRDGVSEGQFRQVLYYELLAIREACISLEKEYQPGITYIVVQKRHHTRLFCADRNERVGRSGNIPAGTTVDTDITHPYEFDFYLCSHAGIQGTSRPSHYHVLWDDNCFTADEFQLLTYQLCHTYVRCTRSVSIPAPAYYAHLVAFRARYHLVDKEHDR"

     misc_feature    1106..1390
                     /gene="LOC118302226"
                     /note="N-terminal domain of argonaute; Region: ArgoN;
                     pfam16486"
                     /db_xref="CDD:435368"
     misc_feature    1418..1570
                     /gene="LOC118302226"
                     /note="Argonaute linker 1 domain; Region: ArgoL1;
                     pfam08699"
                     /db_xref="CDD:430160"
     misc_feature    1571..1933
                     /gene="LOC118302226"
                     /note="PAZ domain, argonaute_like subfamily. Argonaute is
                     part of the RNA-induced silencing complex (RISC), and is
                     an endonuclease that plays a key role in the RNA
                     interference pathway. The PAZ domain has been named after
                     the proteins Piwi,Argonaut, and Zwille; Region:
                     PAZ_argonaute_like; cd02846"
                     /db_xref="CDD:239212"
     misc_feature    order(1727..1729,1772..1774,1814..1816,1826..1828,
                     1880..1882,1901..1903,1907..1909)
                     /gene="LOC118302226"
                     /note="nucleic acid-binding interface [nucleotide
                     binding]; other site"
                     /db_xref="CDD:239212"
     misc_feature    2066..3364
                     /gene="LOC118302226"
                     /note="PIWI domain, Argonaute-like subfamily. Argonaute is
                     the central component of the RNA-induced silencing complex
                     (RISC) and related complexes. The PIWI domain is the
                     C-terminal portion of Argonaute and consists of two
                     subdomains, one of which provides the...; Region:
                     Piwi_ago-like; cd04657"
                     /db_xref="CDD:240015"
     misc_feature    order(2498..2500,2510..2512,2546..2557,2564..2566,
                     2588..2590,2597..2599,2609..2611,2621..2623)
                     /gene="LOC118302226"
                     /note="5' RNA guide strand anchoring site [active]"
                     /db_xref="CDD:240015"
     misc_feature    order(2702..2704,2708..2710,2918..2920,3332..3334)
                     /gene="LOC118302226"
                     /note="active site"
                     /db_xref="CDD:240015"
ORIGIN      

agcccgcctcttcctgtcggtgtcaggaggcaacttcaccatatttagctggctggccgacggctcggcagagttggtctgtcaactggactgaacatttgttttctgtggttcgtcggcgggtaccagcccagtggtgacagctttaatttcggcagcgggatataaactacggaagacgacgtggttgggacgcggtgctcggcggagcggggccgtgtcagcgcctgtttttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttttttttaacgcaataaaagtcgccgttgtctgtcagaattccaactatccaacagccgagctagccggctagccaattgctccggctaccccgaccctcgcccccactccccccctcagtaaatacggattcatgtggttcgtgttgacgtcccgctgtctgtaggggattcgctcggactcgctgacccccgccgcgatgacctcctgacggctcctctcgtccgctccatccactttcaccgaaaaccccggctagcgagctaactcggctaactggccaggtcttccagcgccacagcgtcgcgtcgcgtcgaggagccccgcagccttctcgccgtggcaccggaatcccgatcggatacgtggaccgtgtgagagcggcggtgcgcggggggacgccggactgggccaggccgggcgacacgacacgaccgtgctgaaggaggggaaccggggaacccccccccccccctccacctctgataaatccgcagctaaccgagaccgggggcactgtggaggcggcgcgctgccggaggagacaccggactgagcggaggaaagagcctcgaacgtttgacacctgcgatccgggaagcgatccgggcagagacctcatgaatggaaatcggaactacaggagccgttggggcccagtccctgttctccatgcctcggcggcctggctatggcaccatggggaagcccatcaagctgctggccaactgcttccaggtggagatccccaagatggatgtctacctctacgaggtggacatcaagcctgacaagtgtccgcggcgagtcaacagggaggtggttgactctatggtgcagcacttcaaggtgacaatctttggggatcgcaggccggtgtacgatggaaagaggagcctgtacacagccaacccactgcctgtggcacctgcaggggtggacctggacgtcactctgccaggtgagggagggaaagatcgtcccttcaaagtttccattaaatttgtgtcgctggtcagctggcacatgctccacgaggtgctgactggccgcagcatgcctgagcctctggagctggacaagcccatcagcaccaaccctgtgcatgcagtggacgtggtcctgcgacacctgccctccatgaagtacactccggtgggtcgatccttcttctcagccccagagggctatgaccatcccctgggaggtggcagggaggtttggtttggcttccatcagtccgtgcgtcctgccatgtggaagatgatgcttaacattgatgtgtctgccaccgcattttacaaggcccagcctgtcatccagttcatgtgtgaagtgctggacatccacaacattgacgagcagcctcgccctctcacagactcacaccgggtcaaattcaccaaagaaatcaaaggtttgaaggtggaggtgacacactgtggaacaatgcggaggaagtaccgtgtctgcaacgtgacccgtcggcctgcgagccatcaaacgttccctctacagttggaaaacggtcagaccgtcgagcgtactgtagcccagtacttcagggagaagtacaacctgcagctaaagtacccacatttgccctgtctacaagtgggccaggagcaaaagcacacctaccttcccctggaggtgtgtaacattgtagcaggacaacgatgcatcaagaagctgacagataatcagacctccacaatgatcaaagccacagctcgctctgcccccgacagacaagaggagatcagcaggctggtgcgtagtgccaactacgaggccgacccgtttgtgcaggagttccagttcaaagtgcgcgacgagatggcccatgtgacggggcgagtgctacccgcccccatgctgcagtacggcggcagggtgagcacagagcactttatgaatcgtactgtagccacacctagccacggggtgtgggacatgagagggaagcagttccacaccggggtggagatcaagatgtgggccattgcttgctttgccacacagaggcagtgtcgggaagaaatcctaaagggtttcacagaccagctacgcaaaatctcaaaggacgctgggatgcccatccagggtcagccgtgtttctgcaagtacgcccagggagcggacagcgtggagcccatgttccgacacctgaagaacacctatgccggactgcagctcatcattgtcatcctgccgggaaagactccggtctacgcggaggtgaagcgcgtgggagacaccctccttggcatggccacgcagtgcgttcaggtgaagaacgtggtgaagacgtcgcctcagaccctctccaacctctgcctcaagatcaacgtgaagctgggaggcatcaacaacatcctggtgcctcatcagcgaccttcagtgtttcagcagccagtcattttcttgggagcagatgttacacatccacctgctggagatggaaagaagccttcaattgcagcagtggtgggcagtatggacgcccaccccagcaggtactgtgccaccgtgcgagtccagaggcccaggcaggaggtcatccaggacctggcctccatggtgcgggagttgctcatccagttctacaagtcgacccgctacaagcccaccaggatcattttctacagagatggagtttcagaaggccagttcagacaggtgctgtattatgagctgctggccattcgcgaggcctgtatcagcctggagaaggagtaccagcctggcatcacctacattgttgtacaaaaacgccaccacacacgcctcttctgcgctgaccgcaacgaaagagtcggtcgtagcggaaacattccggctggtacgaccgtggatacagacatcacccatccgtacgagtttgacttttacctctgcagtcacgctggaatacagggcaccagtcggccctcccactaccatgtactgtgggatgacaattgttttaccgctgacgagttccagctgctcacctaccagttgtgccacacctatgtgcgctgcacccgctcagtctccatccctgcgccagcctactacgcccacctggtggccttccgcgcccgctaccatctggtggacaaagagcatgacaggtga

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