2024-05-02 18:42:30, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_035125350 6360 bp mRNA linear VRT 23-OCT-2023 DEFINITION PREDICTED: Zootoca vivipara argonaute RISC catalytic component 2 (AGO2), transcript variant X2, mRNA. ACCESSION XM_035125350 VERSION XM_035125350.2 DBLINK BioProject: PRJNA1028606 KEYWORDS RefSeq. SOURCE Zootoca vivipara (common lizard) ORGANISM Zootoca vivipara Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Lepidosauria; Squamata; Bifurcata; Unidentata; Episquamata; Laterata; Lacertibaenia; Lacertidae; Zootoca. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_083283) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Oct 23, 2023 this sequence version replaced XM_035125350.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_963506605.1-RS_2023_10 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.2 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 10/17/2023 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..6360 /organism="Zootoca vivipara" /mol_type="mRNA" /db_xref="taxon:8524" /chromosome="8" gene 1..6360 /gene="AGO2" /note="argonaute RISC catalytic component 2; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 61 Proteins" /db_xref="GeneID:118090038" CDS 336..2939 /gene="AGO2" /codon_start=1 /product="protein argonaute-2 isoform X2" /protein_id="XP_034981241.1" /db_xref="GeneID:118090038" /translation="
MYTAGGAAPVAAGPVLATPPAMPPPIQAYAFKPPPRPDFGTSGRSIKLQANFFEMDIPKIDIYHYELDIKPEKCPRRVNREIVEHMVQHFKGQIFGERKPVFDGRKNLYTAIPLPIGRDKVELEVTLPGEGKDRIFKVAIKWMSGVSLQALHDALSGRLPSVPFETIQALDVVMRHLPSMRYTPVGRSFFTASEGCSNPLGGGREVWFGFHQSVRPSLWKMMLNIDVSATAFYKAQPVIEFVCEVLDFKSIEEQQKPLTDSQRVKFTKEIKGLKVEITHCGQMKRKYRVCNVTRRPASHQTFPLQQESGQTVECTVAQYFKDRHKLVLRYPHLPCLQVGQEQKHTYLPLEVCNIVAGQRCIKKLTDNQTSTMIRATARSAPDRQEEISKLMRSASFNTDPFVREFGIMVKDEMTDVTGRVLQPPSILYGGRNKAIATPVQGVWDMRNKQFHTGIEIKVWAIACFAPQRQCTEVHLKSFTEQLRKISRDAGMPIQGQPCFCKYAQGADSVEPMFRHLKNTYAGLQLVVVILPGKTPVYAEVKRVGDTVLGMATQCVQMKNVQRTTPQTLSNLCLKINVKLGGVNNILLPQGRPPVFQQPVIFLGADVTHPPAGDGKKPSIAAVVGSMDAHPNRYCATVRVQQHRQEIIQDLAAMVRELLIQFYKSTRFKPTRIIFYRDGVSEGQFQQVLHHELLAIREACIKLEKDYQPGITFIVVQKRHHTRLFCTDKNERVGKSGNIPAGTTVDTKITHPSEFDFYLCSHAGIQGTSRPSHYHVLWDDNRFSSDELQILTYQLCHTYVRCTRSVSIPAPAYYAHLVAFRARYHLVDKEHDSAEGSHTSGQSNGRDHQALAKAVQVHQDTLRTMYFA"
misc_feature 633..857 /gene="AGO2" /note="N-terminal domain of argonaute; Region: ArgoN; pfam16486" /db_xref="CDD:435368" misc_feature 885..1037 /gene="AGO2" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:430160" misc_feature 1038..1400 /gene="AGO2" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212" misc_feature order(1194..1196,1239..1241,1281..1283,1293..1295, 1347..1349,1368..1370,1374..1376) /gene="AGO2" /note="nucleic acid-binding interface [nucleotide binding]; other site" /db_xref="CDD:239212" misc_feature 1533..2810 /gene="AGO2" /note="PIWI domain, Argonaute-like subfamily. Argonaute is the central component of the RNA-induced silencing complex (RISC) and related complexes. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the...; Region: Piwi_ago-like; cd04657" /db_xref="CDD:240015" misc_feature order(1944..1946,1956..1958,1992..2003,2010..2012, 2034..2036,2043..2045,2055..2057,2067..2069) /gene="AGO2" /note="5' RNA guide strand anchoring site [active]" /db_xref="CDD:240015" misc_feature order(2148..2150,2154..2156,2364..2366,2778..2780) /gene="AGO2" /note="active site" /db_xref="CDD:240015" polyA_site 6360 /gene="AGO2" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN
ccggctcctcctcccgggccctgcccgcctcgcctcagctcggctccctccgccctcagcaaagcaaccatcatcgtgcctggcgccggagtttggcgggggggcctcggcagcggagctccagccgacgagggaggaggaggaggagaaggaagaagaggaggaggagaaggcgggctttatttttatttcattatcgtcaccattattattactgttattattattttccctgccgcctcgcctcccccctccccgcccgccgccgccgccgctctcctcatagaagaagaagaagaaaagggcgccacgccgcccgcccgagggccgccgccatgtacacggcggggggagcggcccccgtcgccgcgggacccgtacttgcaacacctccggctatgccacctccaatacaggcatatgcatttaaaccgccccctcgacctgattttggtacttcagggagatcaatcaaactgcaagccaacttttttgaaatggacattccaaaaattgacatctaccattatgaattggatataaagccagagaagtgccctagaagagttaacagagaaatagttgaacacatggtccagcactttaaaggacagatatttggggagcgcaagccagtgtttgatggaagaaaaaacctctatacagctataccacttccaatagggagagataaagtggagttggaggtcacattgccgggagaagggaaggacagaatatttaaagtggcaataaagtggatgtcaggtgtgagtctgcaggctttacacgatgctctctctggtcgtcttccaagcgttccttttgaaacaattcaggcactggatgtagtaatgaggcacttgccttccatgaggtacactcctgtgggacggtccttttttactgcatcagaagggtgctctaatcccttgggtggcggcagagaagtttggtttggattccatcagtcagtcaggccttcactgtggaaaatgatgcttaacattgatgtatctgcaacagcattttacaaggcacaacctgtaattgagttcgtatgtgaagttttggatttcaaaagtattgaagaacaacagaaacctctgacagattcccaaagggttaagtttaccaaagaaattaaaggtctgaaggtagaaatcactcactgcgggcaaatgaagagaaaataccgagtatgcaatgttaccagacgaccagcaagtcaccaaacattcccgcttcagcaagagagtggacagaccgttgaatgcactgtagctcaatattttaaagataggcacaagctggttttacgataccctcatcttccatgtttacaagttggacaggagcagaaacacacctatctccctctagaggtatgcaacatagtggcaggacagaggtgtataaagaagctgacagacaatcaaacttccactatgataagagcaactgctagatcagcacctgaccgtcaagaagagattagtaaactgatgagaagtgcaagttttaatactgacccttttgttcgtgaatttggaataatggtgaaagatgaaatgacggatgtgactgggcgggtcctacagcctccttcaattctctatggaggcaggaacaaagcaatagctacaccagttcaaggggtttgggatatgaggaacaaacagtttcacactggaattgaaatcaaggtctgggcaattgcttgctttgctccacagcgccagtgcactgaagtccaccttaagtctttcacagaacaactgaggaagatatcaagagatgcaggaatgcccatccagggtcagccctgtttctgtaaatatgcccagggagcagatagcgtggaaccaatgttccgacatctaaaaaacacttatgccggattgcagctcgtagtagtcattctgccaggaaaaactccagtttatgctgaggtgaagcgtgttggtgatactgtgctcggcatggccacacaatgtgtgcagatgaaaaatgtgcagagaacgacgccacagacactttccaatctgtgcttaaagatcaatgtcaaactgggaggagtaaataacattttactgcctcagggaaggcctccagtatttcagcaacctgtaattttcctgggtgcagatgtcactcatccaccagctggagatgggaaaaaaccatccattgctgctgttgtaggtagtatggatgcccaccctaatcgatactgtgccactgtgagagtccagcagcaccgccaagagatcatccaagacttggctgccatggtcagggagctgctcattcagttctacaaatcaacccgattcaaaccaactcggattattttctacagagatggtgtttctgaggggcaattccaacaggtcctccatcatgaattgctggctatcagagaagcatgtattaagctagaaaaagactaccagcctggaattacattcattgttgtgcagaaaaggcatcacaccagactattctgtacagacaaaaatgaaagggttgggaaaagtggaaacattccagcaggtacaacagtggacacaaaaatcacccacccttcagagtttgacttctatctgtgtagtcatgctggtattcaggggacaagcaggccatctcattaccacgttctctgggatgacaatcgtttctcttcagatgagcttcaaatccttacctaccaactgtgtcatacatatgtacgctgtactcgttctgtttcaatccctgcaccagcatactatgcacacctggttgccttcagagccaggtatcatctggtggataaagaacatgatagtgctgaagggagtcatacgtctggtcagagcaatggcagagatcatcaagcacttgcaaaagccgttcaggttcatcaagatacattgcgcaccatgtactttgcttgacatgttgcagtgctttaagtaactcagttccaagttggattcacaggagaccagctgcacttagaccaacagttgccccagctacagcgacagccagcaatgagtgatgcatcataattttattaggttttaatttttagtattgttttttcatttgcgaggaagccttccgtccgggatttcagacttgattgcaaattgcagacctgtacaaaattgcacagctattagaagtttggatttgccaaaatcagaagctgcttgtcaggaagaaaggaacaaaaaagaaacaaatcaaaacccaccttttgtaactaaatctagagctgtgatctcagggctaaaaacaacacttttcatttagttatgcctttctacagatatacttgtttgtaactaatctgaaaatacccaattaagatcaggcttaatgggttggtgaaaaacctattaattttgcttttattcctgaaaagaaaatgaagtgctaattcggtgccatttaaatcctcagtcattttggatgcattcacaaatggtttagtattgagatgcaaaaggggagaatcctggtttgccccttgctgtcttctagatgaacagtctgtgggggtctatgggcaaaaaaagtattttttgaagttagttcttgaatgtctctcattgtgctgttttaaggttttggtagaatgaataatggaattatttcaggaagaaaaaggagtttattatacattttattaggtccattgaaagattagcaaagtgtgccattaaaaatgtatttttttcctttaaaaatccattttgattactaatcatggagtttgtcctataggactgtgacacttaattttccaaagcttttctaaagaatacgggtctgtggtgatacagtacaatctttttcactgttatgtttgaattaatgtaaaaattatatatgttcacagtattaacatgatagactagatgctatttatttttatttactaaggagtgatcagctcaacatatttctgttaacatatcataaattcaggaatgctttggatttgagatgagaagtttatcatggggacactagtgatttgggttggaattcaccaaccgtagcttttgcaagttttttattcatttcaacaggccttgtgtgtgatgcttcacccacatctctttgaaatgaacagaggataggctgtagcaatgcttggtgtatttcaaaagcaggaatatgcaactgacttaacgaggcagggctgagagatttacctggtgtatatattgttttattcagcttatatttggaagggcttgctgagctcatccagctcagtagatctaacactcggtagtttaggcatgaaggaacagttcttgattcattcaagcacaacaaattgctttcctgttcgatcatctgagacagagaagtgaaaggaaagagatctggtgtgtacttagccagcgaagtgtcaactgttttgcgtaacatgaatagaaagaggtgggggaggtttgctgttctctttggaggagcattaattcaaacagagacctacttaaaataaaagcttctgtacatttgcacaagattcatataggtgactaacgacaaacaccattgcactaatgatggcaacaggaacactactaagatactgtcgaagaaagcccaggaaatttccctcctaatctgaccttgctggagtttacaaaaaggaagaaaagagctaaacacatcaagtcatttttaagtcatttttatgcttgtaaaaccatcttaagattcattaggatttgttttctctctctcttctgaacagcagaacagctgctttgcaagatttgttcccatttctctattcaagaagtgggggaaatgggatcatgctgtgctaagattgttacggcattatagaactgatagttgatgcctgggcaacagagtgctcaatatttttttttgttgcctattaaattttaggaatctaatttatgctgtacaccagttaaagtctgcacctagtaagcagtgcctcataatgccaaacagatctgctggaacaacagacaggcttttgaggcatgagtatgtcatgttttctttagtgtgtgtgtgtgtgtgcgcgcgtgtgaaaattctggacactgcagttccagcagcttgattgttttaagaaaaacaggacccagtcagggtctctgtcattctgctgtgaatagcagattgcaacatctccttcttgaatttatagcatcttacctttttcttcatggatttgttgcactttccagcttgtgttagggaagcgattgaaatgtgaagagatatttggggttcaccactgttcagttggtgaacgagctggttctaaaggctaatctgcttttgaagttctgtcctaggctggcacttaaggtggcagtaattcattatttccttgtttctctgtcatcttgaagctacaccaggcagaaagaggtgggccaaggtgatagaattttccttgtcttcctatccagaactgggtggtcaagtcactgcaaagagctctttcccacagctgctgttaactagcaacgagctaaaatagtagcggctatcttctaggtgctagctggcagtcacctagttcttttcatttgttccatttccattatcttcattgaatcagcactcacagactgcagacgcatgtccacaattgttgcctgggcttgtgtagacccttctccaaagaattaatgttgtcactggcatttgcagcaatttcatgtgagtatctacctgtgtagaaggaatatggtcgtttcctgaaagttagatataattgtggcagaaaggataaatgcatgttgttttctttcttttaatcttgtatactgtatttttttaaagaagtctttttttcctttctcattgttagatgcatgatgaactagtgtctagcaagattcagcatcggggggaggggttgtaaagcttgtttttgaacaattgacaatgcactttgaaaagatagggcactctgattatgcacaggaactgctttttataatatatgcataaaccaaaactccaatttgaaacaaagaatacatctttctacacagctgtttactacaatgactcttgaaagcacagcaatatctcaggtgattaatttcatacacttctatccaaaatattctccatgagaacaaaagagaatagtttacaaaaaaactgaggggagtccagggttgtgtcatatacctggaagtgcttttaaattttatctacttattgttggaatcaatttgtaataaatctggttctgttaggaatttggcttcttttttcccttttttaaaatgttgctcctttttcacatgcagagaaaactgggtctgattgacctccataattgtttttttt
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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