GGRNA ver.2 Home | Help | Advanced search    Previous release (v1)

2024-03-29 15:10:01, GGRNA.v2 : RefSeq release 222 (Jan, 2024)

LOCUS       XM_033887958            2474 bp    mRNA    linear   INV 28-APR-2020
DEFINITION  PREDICTED: Pecten maximus PDZ domain-containing protein 11-like
            (LOC117329806), mRNA.
ACCESSION   XM_033887958
VERSION     XM_033887958.1
DBLINK      BioProject: PRJNA625562
KEYWORDS    RefSeq.
SOURCE      Pecten maximus
  ORGANISM  Pecten maximus
            Eukaryota; Metazoa; Spiralia; Lophotrochozoa; Mollusca; Bivalvia;
            Autobranchia; Pteriomorphia; Pectinida; Pectinoidea; Pectinidae;
            Pecten.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_047020.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Pecten maximus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.4
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2474
                     /organism="Pecten maximus"
                     /mol_type="mRNA"
                     /db_xref="taxon:6579"
                     /chromosome="6"
     gene            1..2474
                     /gene="LOC117329806"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 long SRA reads, 3 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 38 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:117329806"
     CDS             87..545
                     /gene="LOC117329806"
                     /codon_start=1
                     /product="PDZ domain-containing protein 11-like"
                     /protein_id="XP_033743849.1"
                     /db_xref="GeneID:117329806"
                     /translation="
MTLDGKELVYANLPDYEDPPEWIHPHDRPYSEDYSNEIHQFLPRQLILQRNQVSEQLGFNIRGGKEHHCGIYVSKVTMDSEADKLGLQEADQILSVNRVNFEEIDHAEAVNILKRNTSINMQVRYFPYGYDRTYDKSRYLLANHQQSPNSNH"
     misc_feature    213..458
                     /gene="LOC117329806"
                     /note="PDZ domain found in a variety of Eumetazoan
                     signaling molecules, often in tandem arrangements. May be
                     responsible for specific protein-protein interactions, as
                     most PDZ domains bind C-terminal polypeptides, and binding
                     to internal (non-C-terminal)...; Region: PDZ_signaling;
                     cd00992"
                     /db_xref="CDD:238492"
     misc_feature    order(252..263,267..269,411..416,423..428)
                     /gene="LOC117329806"
                     /note="protein binding site [polypeptide binding]; other
                     site"
                     /db_xref="CDD:238492"
ORIGIN      
agtgtagttaagcgtctcgtttacgctgatagctgtatagacagcagacaagctttcctctgcatttagttaaataatacaacgagatgacactagacgggaaggaattggtatatgccaatctaccagattatgaagatccaccagaatggatacatccgcacgataggccttacagtgaagactatagtaatgaaatacaccagttcctgccaagacaattaattctccagcgaaaccaagtttctgaacagcttggattcaatatcaggggaggtaaagaacaccattgtgggatttatgtatcaaaggtgacgatggacagtgaagcagacaaactcggactacaggaagcagatcagattttgtctgtaaacagagttaactttgaagagatagatcatgctgaggcagtgaacattttaaaaagaaacacatccatcaacatgcaagtccgatatttcccatatggttatgatagaacttatgacaagagtcggtatttactggccaaccatcagcagtctccaaatagtaatcactagtgtcaactcctgtaccaacagatcagatcattggaatgtttgcttgctgtaggggatgttatagttaattcaagggtgtcttttacctagattaatgttccatctagatctacaaccctcacatcactggaatgtttgcttactacagtgaatatacctgtgaattcaagtgtgtgaaaaaccaggataaactggccatctgacagtataatggtttaaggtatatgcacagcaagactacagccattttttcatgaagttcaaaaagttttaccagttcgactggagttaatgaaaaaaggaccgacctaatgatctcattttgctgtgaggcgaataccaacaactatgttcaaggttctattaacatatgcaggttcatcagtttttatatcttcagatgttacaattgaatataaaagtggtttgtccacccaaaccaacaggcactatagtttccttcactgagacgagtttcctatttctttatcaacatgatgcatactgacacaacagttgataacatttagtttttgcaagaaattaatataaatatttgccatgacattattactttgttacttttcatacaaaaagttgtttttaatatgatacacatttcatatcaaaacatcatttgatacaatgtactgttgtactttatgcatgcatagactagcatttttttcagtgcacaaaatatatatacttaccagatttatctacattatataccattagttttagtttgtcagattgatacattgaactctattgttaaagattaataaatagaaatctattgttttttcatcaaatgtcagaattttagttcttaaatagattgtatcaaccttgtaattacatgctgtattttgatattcatcaaactgaaaacaaaatagattatattcaaaccagtattaaagtttattaattagtcccccactagttcagaggggactactttctgttctttctcacttttcttttgttcaggatcatcctcgaactcatatactaagggggccgcggtggccgagtggttaaggtgtcccgacactttatcactagccctccacctctgggttgcgagttcgaaacctacgtggggcagttgccaggtactgactctaggctggtggttttcctccgggtactccggctttcctccaccttcaaaacctggcacgtccttaaatgaccctggctgttaataggacgttatgcaaaaacaaccccaaaaatacaaacctcatgtactacatataactggtagtttatacagtaattagggcattggttcatctaggtcatgtataccagaaataggtcactctgacctatattttgacatttgatcttcattacagaatctgatgaagtttgtcaggtctttattctctacattctgcttgtaactggaacttggagcatcgtttgacctagatgaggtggtgtgtcatgtatcaaaattaggtcattgtgacctacattttgatatttgatctacattacagatacagtttgtcagggttctattttcttcaatctacttatcactggaactttgtacttggggcatggttcaacatatatgaggtggtgtgtcatgtatcaaaagtaggtcactttgacctacattttgaattttgacctacatcaaagaaaaggtctgtctgttcataggatatgatttacatttgacggggaactgtgatttgccagctattcttgtttacattaatcttgttttttttttcaattaattacaccagatgtatcattcaggatataaaataggcattgattaaaataaagcatgcacatgtacaagaagcagattggagcagacttcaaaaatgtcattattggtttaatacattacaaagttaattgttaatcaatagtaataatcgttaatcacaa
//

by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).

If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]