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2024-03-29 14:53:42, GGRNA.v2 : RefSeq release 222 (Jan, 2024)

LOCUS       XM_033379282            2589 bp    mRNA    linear   INV 14-APR-2020
DEFINITION  PREDICTED: Drosophila pseudoobscura trichohyalin (LOC26532712),
            mRNA.
ACCESSION   XM_033379282
VERSION     XM_033379282.1
DBLINK      BioProject: PRJNA622252
KEYWORDS    RefSeq.
SOURCE      Drosophila pseudoobscura
  ORGANISM  Drosophila pseudoobscura
            Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
            Pterygota; Neoptera; Endopterygota; Diptera; Brachycera;
            Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_046681.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Drosophila pseudoobscura Annotation
                                           Release 104
            Annotation Version          :: 104
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.4
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2589
                     /organism="Drosophila pseudoobscura"
                     /mol_type="mRNA"
                     /strain="MV2-25"
                     /db_xref="taxon:7237"
                     /chromosome="4"
                     /sex="female"
                     /tissue_type="whole body"
                     /dev_stage="adult"
     gene            1..2589
                     /gene="LOC26532712"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 19 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:26532712"
     CDS             15..2393
                     /gene="LOC26532712"
                     /codon_start=1
                     /product="trichohyalin"
                     /protein_id="XP_033235173.1"
                     /db_xref="GeneID:26532712"
                     /translation="
MLNICIILLVFFNLTENLTRGSDFHENQESCFVSRELEDQCASVCYPTVKPLLKYMGICHQKDLQISGIQNQLQDQNEKVTKYKTQVEFLNKKLVDERSSSGLKNDLKETIDKVQNLRLELSGELKKLNRQKNNTVKDLNEEIDRLKLQLTSKELKEKNMEEKVEILKKKNSTLKNLQEEIANVKMQLKRKDEQNEKTMIEKDEIIKQKDKTMEEKDELLKQKEKIMEEKDELLKKKDSTLKNLQEEIANVKIQLKRKDEQNEKTMIEKDEIIKQKDKTMEEKDELLKQKEKIMEEKDELLKKKDSTMKDLQEGIANVKIQLKSKDELLKQNEKTMIEKDELLKQKEKNMEEKDELLKKKEKNMEEKDELLKKKDNTLKNLQEEIANVKMQLKRKDEQNEKTMIEKDEIIKQKEKTMEEKDELLKQKKKIMEEKDELLKKKDSTMKDLQEEIANVKIQLKSKDELLEQNEKKIIEKNELLKQKEKNMEEMDELLKQKEKIMEEKDELLKKKDSTMKDLQEEIANVKIQLKSKDEILEQNEKTMIEKDELLKQKEKTMEDKDELLKQKEKKMEEKDELLKKKEKTMEEKDELLKKKDSTLKNLQKEIANVKMQLTSKDELLEQKEEQIKKKEQFIRHILDNADPKISETHTIDVPLAEPDERGWTIILQELEGSASLEKKLAQYKEKPFNNGNDSFFIGRKNLYFMTQASPHEILIQVKFVDGRSSSVQDIRFKMGNAEEDYTLRSVDDNLPNRKYSITEIKALMAIQVLMKRKMPFSSRDWKQLTIKFREIQ"
     misc_feature    <384..1934
                     /gene="LOC26532712"
                     /note="MAEBL; Provisional; Region: PTZ00121"
                     /db_xref="CDD:173412"
     misc_feature    1983..>2354
                     /gene="LOC26532712"
                     /note="Fibrinogen-related domains (FReDs); C terminal
                     globular domain of fibrinogen. Fibrinogen is involved in
                     blood clotting, being activated by thrombin to assemble
                     into fibrin clots. The N-termini of 2 times 3 chains come
                     together to form a globular...; Region: FReD; cl00085"
                     /db_xref="CDD:412152"
     misc_feature    2238..2240
                     /gene="LOC26532712"
                     /note="gamma-gamma dimer interface [polypeptide binding];
                     other site"
                     /db_xref="CDD:238040"
ORIGIN      
tatattcccagaatatgttgaatatttgtattattctgttggttttttttaatttgacggagaatttgacacgtggttcagatttccatgaaaaccaagagtcgtgttttgtatcaagagaactggaagatcaatgcgcttccgtttgttatcccaccgtcaagccgttgcttaaatacatgggaatatgccatcagaaggatctacaaataagtggaattcagaaccaacttcaagaccaaaatgagaaggttaccaaatacaaaactcaagtagaatttctcaataaaaagttggtagatgagcgaagttcttctggcctcaagaatgacctaaaagaaaccatcgataaggtgcagaacctcagattggagctcagtggagagttgaaaaagttaaacagacagaaaaacaataccgtgaaggatctgaacgaagaaatcgacagattgaagttgcaactgacaagtaaggagctaaaggagaaaaatatggaagaaaaggttgaaatattaaaaaagaagaatagtaccttgaagaatctgcaagaagaaatcgcgaatgtgaagatgcaactgaagagaaaggatgaacaaaacgagaaaacgatgatagaaaaggatgaaattataaaacaaaaggataaaacgatggaagaaaaggatgaactcttaaaacagaaggagaaaattatggaagaaaaggatgaactattaaaaaagaaggatagtaccttgaagaatctgcaagaagaaatcgcgaatgtgaagatacaactgaagagaaaggatgaacaaaacgagaaaacgatgatagaaaaggatgaaattataaaacaaaaggataaaacgatggaagaaaaggatgaactcttaaaacagaaggagaaaattatggaagaaaaagatgaactattaaaaaagaaggatagtaccatgaaggatctgcaagaaggaatcgcgaatgtgaagattcaactgaagagcaaggatgaacttttaaaacaaaacgagaaaacgatgatagaaaaggatgaactattaaaacaaaaggagaaaaatatggaagaaaaggatgaactcttaaaaaagaaggagaaaaatatggaagaaaaagatgaactattaaaaaagaaggacaataccttgaagaatctacaagaagaaatcgcgaatgtgaagatgcaactgaagagaaaggatgaacaaaacgagaaaacgatgatagaaaaggatgaaattataaaacaaaaggagaaaacgatggaagaaaaggatgaactcttaaaacagaagaagaaaattatggaagaaaaagatgaactattaaaaaagaaggatagtaccatgaaggatctgcaagaagaaatcgcaaatgtgaagattcaactgaagagcaaggatgaacttttagaacaaaacgagaaaaaaattatagaaaagaatgaactattaaaacaaaaggagaaaaatatggaagaaatggatgaactcttaaaacagaaggagaaaattatggaagaaaaggatgaactattaaaaaagaaggatagtaccatgaaggatctgcaagaagaaatcgcgaatgtgaagattcaactgaagagcaaggatgaaattttagaacaaaacgagaaaacaatgatagaaaaggatgaactattaaaacagaaggagaaaacgatggaagacaaggatgaactattaaaacagaaggagaaaaagatggaagaaaaggatgaactattaaaaaagaaggagaaaacgatggaagaaaaggatgaactcttaaaaaagaaagatagtaccttgaagaatctgcaaaaagaaatcgcgaatgtgaagatgcaactgacgagcaaggatgaattattagaacaaaaggaggaacaaattaaaaaaaaggagcagtttattaggcatattttggataatgcagacccaaaaatcagcgagactcatacaatcgatgttcctttggcagaaccagacgaaaggggttggacaattattttgcaagagcttgagggatcggctagtctagaaaagaagcttgctcaatataaagaaaagccgttcaacaatggaaatgattcatttttcatcggccgcaagaatctgtatttcatgacacaggcctcgccacacgaaattcttatccaagtaaaatttgtggatggcagaagttcttcggttcaagacattcgcttcaaaatgggcaacgcagaagaagactacacactcaggtcggtcgatgataatttaccaaacagaaagtactccattaccgaaataaaagcgcttatggcgattcaggttcttatgaaacgaaaaatgccattcagttctagggactggaagcaattgaccattaagttcagagagatccaataatagaagaaggaaccattatgcgcccttgatagagaagtatttttatatatttaaatacaatttttgaattcttcggtaattgatgaagctaccgtgaactaacgttaaaaaaatagtttaaaaaataaaagttaatgctggtttttctgttattttctggtattttttttggttcaataaatatggagaacaccaa
//

by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]