2024-04-27 04:22:28, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_033354212 5194 bp mRNA linear INV 23-FEB-2022 DEFINITION PREDICTED: Belonocnema kinseyi protein argonaute-2 (LOC117168499), transcript variant X3, mRNA. ACCESSION XM_033354212 VERSION XM_033354212.1 DBLINK BioProject: PRJNA623416 KEYWORDS RefSeq. SOURCE Belonocnema kinseyi ORGANISM Belonocnema kinseyi Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Hymenoptera; Apocrita; Proctotrupomorpha; Cynipoidea; Cynipidae; Cynipinae; Cynipini; Belonocnema. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_046658.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Updated annotation Annotation Name :: Belonocnema kinseyi Updated Annotation Release 100.20220217 Annotation Version :: 100.20220217 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 9.0 Annotation Method :: Best-placed RefSeq; propagated RefSeq model Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..5194 /organism="Belonocnema kinseyi" /mol_type="mRNA" /isolate="2016_QV_RU_SX_M_011" /host="Quercus virginiana" /db_xref="taxon:2817044" /chromosome="2" /sex="male" /tissue_type="whole body" /dev_stage="Sexual adult" /country="USA: Houston" /collection_date="2017" gene 1..5194 /gene="LOC117168499" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 85 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 7 samples with support for all annotated introns" /db_xref="GeneID:117168499" CDS 88..2781 /gene="LOC117168499" /codon_start=1 /product="protein argonaute-2 isoform X3" /protein_id="XP_033210103.1" /db_xref="GeneID:117168499" /translation="
MYPVGQPPPPGPTTSTAVGAAGTTGSSVVAPSSLGLVPAQQTHTPPQPPDLPMFACPRRPNIGREGRVIGLRANHFQITMPRGYVHHYDINIQPDKCPRKVNREIIETMVHAYSKIFGTLKPVFDGRSNLYTRDPLPIGTDRLELEVILPGEGKDRVFRVVIKWVAQVSLFALEEALEGRTRQIPFDAILALDVVMRHLPSMTYTPVGRSFFSTPDGYYHPLGGGREVWFGFHQSVRPSQWKMMLNIDVSATAFYKAQPVIEFMCEVLDIRDINEQRKPLTDSQRVKFTKEIKGLKIEITHCGTMRRKYRVCNVTRKPAQMQSFPLQLENGQTVECTVAKYFLDKYKMKLRYPHLPCLQVGQEHKHTYLPLEVCNIVAGQRCIKKLTDMQTSTMIKATARSAPDREREINNLVRRADFNNDSYVQEFGLTISNNMMEVRGRILPPPKLQYGGRVSSLSGQTKQQALPNQGVWDMRGKQFFTGVEIRVWAIACFAPQRTVREDALRAFTTQLQKISNDAGMPIIGQPCFCKYATGPDQVEPMFRYLKSTFQSLQLVCVVLPGKTPVYAEVKRVGDTLLGMATQCVQAKNVNKTSPQTLSNLCLKINVKLGGINSILVPSIRPKVFNEPVIFLGADVTHPPAGDNKKPSIAAVVGSMDAHPSRYAATVRVQQHRQEIIQELSSMVRELLIMFYKSTGGYKPHRIILYRDAISEGQFLHVLQHELTAIREACIKLEADYKPGITFIAVQKRHHTRLFCADKKEQSGKSGNIPAGTTVDVCITHPTEFDFYLCSHQGIQGTSRPSHYHVLWDDNHFESDELQCLTYQLCHTYVRCTRSVSIPAPAYYAHLVAFRARYHLVEKEHDSGEGSHQSGCSEDRTPGAMARAITVHADTKRVMYFA"
misc_feature 451..675 /gene="LOC117168499" /note="N-terminal domain of argonaute; Region: ArgoN; pfam16486" /db_xref="CDD:435368" misc_feature 703..855 /gene="LOC117168499" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:430160" misc_feature 856..1218 /gene="LOC117168499" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212" misc_feature order(1012..1014,1057..1059,1099..1101,1111..1113, 1165..1167,1186..1188,1192..1194) /gene="LOC117168499" /note="nucleic acid-binding interface [nucleotide binding]; other site" /db_xref="CDD:239212" misc_feature 1354..2652 /gene="LOC117168499" /note="PIWI domain, Argonaute-like subfamily. Argonaute is the central component of the RNA-induced silencing complex (RISC) and related complexes. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the...; Region: Piwi_ago-like; cd04657" /db_xref="CDD:240015" misc_feature order(1783..1785,1795..1797,1831..1842,1849..1851, 1873..1875,1882..1884,1894..1896,1906..1908) /gene="LOC117168499" /note="5' RNA guide strand anchoring site [active]" /db_xref="CDD:240015" misc_feature order(1987..1989,1993..1995,2206..2208,2620..2622) /gene="LOC117168499" /note="active site" /db_xref="CDD:240015" ORIGIN
gtgtgttgggtggccgacgggtcttgtgttaaattttttacttatttattagtgataattggcgatttataatcggcagcagcgaaaatgtatcccgtgggacagcctcccccaccggggcctacaacaagcactgctgtgggagcagctggaacaactggaagcagtgttgttgcccccagttccttgggcctggttcccgcccaacaaacacacacgcctcctcaacctccagatctgccgatgttcgcatgtccaagaaggccaaacattggtcgcgagggccgcgtcatcggcctgagggccaaccacttccaaattacaatgcctcgtggttacgtgcaccattatgatataaatatccaacctgacaaatgcccaagaaaagttaatcgagaaattattgagactatggttcacgcatatagtaaaattttcggaactctcaagcctgttttcgatggcagaagcaatttatacactcgggacccgttgccgatcggcacagatagattagagttagaggttatacttcccggagaaggcaaagacagagtctttcgagttgtaatcaagtgggtggctcaagtttctctcttcgccttggaagaggcactagagggacgaacccgacaaattcccttcgacgcaatcctcgcattggatgtggtaatgaggcacttaccgtccatgacctacacacccgttggaaggtcgttctttagtaccccagacggttattatcatccccttggtggcggaagggaggtttggttcggttttcaccagtctgtgcggccctcacaatggaaaatgatgttgaacatcgatgtctctgcgaccgccttctataaagcccaaccagtgattgaattcatgtgcgaagttctggacatccgagacatcaacgaacagagaaaacctctgaccgattcgcaacgagtcaagtttaccaaagaaatcaaggggctgaaaattgaaatcacacattgcggaactatgaggcgaaaatacagagtctgtaatgtcacgcgcaaacctgcccagatgcaatcctttccattgcaactagagaatggacagacggtcgaatgtacagttgccaagtacttcttagataaatataaaatgaagctgcgttatcctcatcttccgtgccttcaagttggtcaggagcacaaacacacgtacttacctctcgaggtctgcaacatcgtggcaggtcagaggtgcattaagaaactgacggacatgcaaacgtcgacgatgatcaaagctacggctcgttctgctcctgatcgtgaacgggaaatcaacaatcttgtcagacgtgctgactttaataacgattcttacgtacaagaatttggattgacaatctcgaacaacatgatggaagttagaggacgtatcctacctccgcccaaacttcagtatggaggccgcgttagttccctcagtggacagacgaagcaacaagcgttgcccaatcaaggtgtgtgggacatgcgaggaaaacagttcttcactggtgtcgagattcgagtatgggcgatcgcgtgtttcgccccgcagagaacagttcgagaagatgcgttgcgtgccttcacaacgcaactacaaaaaatcagcaacgacgctggaatgccgataatcggacaaccttgcttctgtaaatatgccactggtcctgatcaagttgaaccgatgttccgatatctgaaatcaactttccagtctttacaattagtctgcgtagtcctgcctggaaaaactcctgtctatgccgaggttaagagggtaggcgatactctcttgggaatggcgacacagtgcgtgcaggcgaagaacgtaaacaaaacatccccacagacattgtcaaatctttgccttaagattaacgtgaaactcggcggtatcaatagcattttggtgccaagcatcagacccaaggtcttcaatgaaccggtcatcttcctcggagctgatgttacacatccacctgcaggcgataacaaaaaaccgagcatagcagctgtagttggaagcatggacgctcatccttcgcggtacgcagccacggttcgagttcaacaacacagacaggaaatcatccaggaactcagttccatggttagagagctgctgattatgttttacaagagcaccggcggctacaaaccacataggataatcctttaccgcgatgctatttctgaaggtcagtttttgcacgttcttcaacatgagttgacggccattcgtgaggcctgcatcaaattagaagccgattacaagcctggaataaccttcattgccgtgcaaaagaggcatcatacccgtttgttctgcgctgacaagaaggaacagagcggaaagagtggaaatattccggctggaacgacagtcgacgtgtgtatcacacatccgaccgagttcgacttctatctgtgcagtcaccaaggaatccagggaacctcgagaccttcgcattatcacgtcctttgggatgataatcattttgaaagtgacgagctacagtgtctcacctaccaactctgccacacatatgtcagatgtacgagatctgttagtataccagctccagcttactatgctcatttggttgcattccgtgctagatatcacttagtcgaaaaagaacatgacagcggagaaggatctcatcaatcgggctgcagtgaagatcgaacgcctggtgcgatggcacgagcgataacagttcacgccgacaccaagcgagttatgtattttgcgtaatttatatgcgcgtgttgatgatctgcgaaatcgccatatccactgaaggaaaaaattcgggagtaactggcaatatccgtaccgcactttatacccaagttgaaatctatgtattgcattcaccccagaattatttctttcagtgtctctgaaagtaacaaagcggagtaatagagagagggagagagagagagagagagagtagcatgctacttaagtgtgacgtttgacgtgctcgggcggccaatttttttgatagatcatttccaagtataatgtcgcacgtctgccgaacatcggagtgccaaataatttcactgcttgacaaaagaaaagaaagaaaaaagattagaaatcaaggtttccgtcaggggtgttcagttggcggacgattttcgatctctgtttgcttctcgatacaaagagtagattttaatgaaaaaggtgcttttagttaatcacgttttagattaaattaaggtctttcgcagattcacacgaaaaaaagggggagaatgaagaaagggattttatatagatttggcctgtgtgcctgaattacgcttatttttttcgaggtagtcgtatgtacctcaatgaatctggcatttgtattataataataatggaaaaaattacgctacacgcaaccatttcgcacttgagactgccaatctattattgtttatggtgaaatatttactctaaaaaaattacgaggcttaatataaccttacattcgaatcgacttgtttagaataattaatgatgaagagagtagagaaaaaaattggccaccttgagtgttgcgtcagtagtcaagaaaaaaacgcttgaaaagaaaaaagaacccaacaaagacatggagctgattttccaagagttaaataagcgaatggccaaagtaagttagaattttattagagtgaaattgggaattgtggcgaatcagggcactttttgttttgcctttataataatgctttcaattgggaaattactttgccacgattactgattttcgcattgctatgtgttctgtatcaaatcttgtcattctaaaatctaaatttacaagtcttttgactaacgaccaagtgtcagtaacacaactcatccaaacttatccaatgcttgttatgaactcaacattattaacaaatattcagcaccaccgaaataatattagttagactagctagcagtttaatcgggtggatggaactcgacagttggcagaagtagttgtaggattccagtaaatattgagcagataaacaacccgttagattaatgaaaagagtactaaatattattattattattattatcattatcatcaggagaatatccatacatttgataaatccttacgttccacacgcggcagaaaatatttccggaatccttttttggaacaataataatcatcatctaggcgtcatgataaataagtgaagaataacttttaagtgcatttcagagtcctctagatttatgtagagtagatagtaattcatattaggtagattaactatttataaccgagtattggctgtcgcacattcagagtttcatgcttaacgagaaaccctcgactggcgacttatttttcataaattttctgatggggaatggacgaaactcaaattgtcgagggtttcacgtcgtagatttacgaacataaagcaagcctcccagcgggttctgataaaaatttcaatttaatcaatcaataatagcttttcttattgtgaatggttaaactgcgatacgccgcatggtgacgaaaatccgaactagaaagaatgggtgcgattttaaagatgcattttaatttatgcataaaagaattttagcgattgttttaaattatttattgggtactaaaaataggcatttatcgtaaacaacggggtttagttataatttacatcttatatagtaaaaaagaaaaacaccttttttgacaaatatttttctgaaaaaaaaaaagcaattattgtgctatttattttgattttcaacagattataatatttaggagagaactcgtatttttaattctaatcgtctgttatttgcataatacgaacaaacttacatgaaatagtgaaataattgttttgtttttttcaaagcctatttgacacgaatgagttttttcactgtataagatagaaattctatgtaaacctatttgttcatttatgaagatttgtttttagcattcaataattgttttaaactttccgaaacaatcgtaaaaacacttttagggaaaaattaaaatacatatttaaaattgtacctactctttctagttccagttttcggcaacaggtggtgaaattgtagaccaccatccccaatacaaatgactaattcctaataaaagttcatatttaatttc
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@meso_cacase at
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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