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2024-03-29 00:49:04, GGRNA.v2 : RefSeq release 222 (Jan, 2024)

LOCUS       XM_033354210            5163 bp    mRNA    linear   INV 23-FEB-2022
DEFINITION  PREDICTED: Belonocnema kinseyi protein argonaute-2 (LOC117168499),
            transcript variant X2, mRNA.
ACCESSION   XM_033354210
VERSION     XM_033354210.1
DBLINK      BioProject: PRJNA623416
KEYWORDS    RefSeq.
SOURCE      Belonocnema kinseyi
  ORGANISM  Belonocnema kinseyi
            Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
            Pterygota; Neoptera; Endopterygota; Hymenoptera; Apocrita;
            Proctotrupomorpha; Cynipoidea; Cynipidae; Cynipinae; Cynipini;
            Belonocnema.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_046658.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Updated annotation
            Annotation Name             :: Belonocnema kinseyi Updated
                                           Annotation Release 100.20220217
            Annotation Version          :: 100.20220217
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 9.0
            Annotation Method           :: Best-placed RefSeq; propagated
                                           RefSeq model
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5163
                     /organism="Belonocnema kinseyi"
                     /mol_type="mRNA"
                     /isolate="2016_QV_RU_SX_M_011"
                     /host="Quercus virginiana"
                     /db_xref="taxon:2817044"
                     /chromosome="2"
                     /sex="male"
                     /tissue_type="whole body"
                     /dev_stage="Sexual adult"
                     /country="USA: Houston"
                     /collection_date="2017"
     gene            1..5163
                     /gene="LOC117168499"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 85 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 1 sample with support for all annotated introns"
                     /db_xref="GeneID:117168499"
     CDS             39..2750
                     /gene="LOC117168499"
                     /codon_start=1
                     /product="protein argonaute-2 isoform X2"
                     /protein_id="XP_033210101.1"
                     /db_xref="GeneID:117168499"
                     /translation="
MEHINGTCSKTETPPPGPTTSTAVGAAGTTGSSVVAPSSLGLVPAQQTHTPPQPPDLPMFACPRRPNIGREGRVIGLRANHFQITMPRGYVHHYDINIQPDKCPRKVNREIIETMVHAYSKIFGTLKPVFDGRSNLYTRDPLPIGTDRLELEVILPGEGKDRVFRVVIKWVAQVSLFALEEALEGRTRQIPFDAILALDVVMRHLPSMTYTPVGRSFFSTPDGYYHPLGGGREVWFGFHQSVRPSQWKMMLNIDVSATAFYKAQPVIEFMCEVLDIRDINEQRKPLTDSQRVKFTKEIKGLKIEITHCGTMRRKYRVCNVTRKPAQMQSFPLQLENGQTVECTVAKYFLDKYKMKLRYPHLPCLQVGQEHKHTYLPLEVCNIVAGQRCIKKLTDMQTSTMIKATARSAPDREREINNLVRRADFNNDSYVQEFGLTISNNMMEVRGRILPPPKLQYGGRVSSLSGQTKQQALPNQGVWDMRGKQFFTGVEIRVWAIACFAPQRTVREDALRAFTTQLQKISNDAGMPIIGQPCFCKYATGPDQVEPMFRYLKSTFQSLQLVCVVLPGKTPVYAEVKRVGDTLLGMATQCVQAKNVNKTSPQTLSNLCLKINVKLGGINSILVPSIRPKVFNEPVIFLGADVTHPPAGDNKKPSIAAVVGSMDAHPSRYAATVRVQQHRQEIIQELSSMVRELLIMFYKSTGGYKPHRIILYRDAISEGQFLHVLQHELTAIREACIKLEADYKPGITFIAVQKRHHTRLFCADKKEQSGKSGNIPAGTTVDVCITHPTEFDFYLCSHQGIQGTSRPSHYHVLWDDNHFESDELQCLTYQLCHTYVRCTRSVSIPAPAYYAHLVAFRARYHLVEKEHDSGEGSHQSGCSEDRTPGAMARAITVHADTKRVMYFA"
     misc_feature    420..644
                     /gene="LOC117168499"
                     /note="N-terminal domain of argonaute; Region: ArgoN;
                     pfam16486"
                     /db_xref="CDD:435368"
     misc_feature    672..824
                     /gene="LOC117168499"
                     /note="Argonaute linker 1 domain; Region: ArgoL1;
                     pfam08699"
                     /db_xref="CDD:430160"
     misc_feature    825..1187
                     /gene="LOC117168499"
                     /note="PAZ domain, argonaute_like subfamily. Argonaute is
                     part of the RNA-induced silencing complex (RISC), and is
                     an endonuclease that plays a key role in the RNA
                     interference pathway. The PAZ domain has been named after
                     the proteins Piwi,Argonaut, and Zwille; Region:
                     PAZ_argonaute_like; cd02846"
                     /db_xref="CDD:239212"
     misc_feature    order(981..983,1026..1028,1068..1070,1080..1082,
                     1134..1136,1155..1157,1161..1163)
                     /gene="LOC117168499"
                     /note="nucleic acid-binding interface [nucleotide
                     binding]; other site"
                     /db_xref="CDD:239212"
     misc_feature    1323..2621
                     /gene="LOC117168499"
                     /note="PIWI domain, Argonaute-like subfamily. Argonaute is
                     the central component of the RNA-induced silencing complex
                     (RISC) and related complexes. The PIWI domain is the
                     C-terminal portion of Argonaute and consists of two
                     subdomains, one of which provides the...; Region:
                     Piwi_ago-like; cd04657"
                     /db_xref="CDD:240015"
     misc_feature    order(1752..1754,1764..1766,1800..1811,1818..1820,
                     1842..1844,1851..1853,1863..1865,1875..1877)
                     /gene="LOC117168499"
                     /note="5' RNA guide strand anchoring site [active]"
                     /db_xref="CDD:240015"
     misc_feature    order(1956..1958,1962..1964,2175..2177,2589..2591)
                     /gene="LOC117168499"
                     /note="active site"
                     /db_xref="CDD:240015"
ORIGIN      
ctacaacatccttcgaatagaatcagaatcgtgttcccatggagcacatcaatggaacatgttcgaagacagaaactcccccaccggggcctacaacaagcactgctgtgggagcagctggaacaactggaagcagtgttgttgcccccagttccttgggcctggttcccgcccaacaaacacacacgcctcctcaacctccagatctgccgatgttcgcatgtccaagaaggccaaacattggtcgcgagggccgcgtcatcggcctgagggccaaccacttccaaattacaatgcctcgtggttacgtgcaccattatgatataaatatccaacctgacaaatgcccaagaaaagttaatcgagaaattattgagactatggttcacgcatatagtaaaattttcggaactctcaagcctgttttcgatggcagaagcaatttatacactcgggacccgttgccgatcggcacagatagattagagttagaggttatacttcccggagaaggcaaagacagagtctttcgagttgtaatcaagtgggtggctcaagtttctctcttcgccttggaagaggcactagagggacgaacccgacaaattcccttcgacgcaatcctcgcattggatgtggtaatgaggcacttaccgtccatgacctacacacccgttggaaggtcgttctttagtaccccagacggttattatcatccccttggtggcggaagggaggtttggttcggttttcaccagtctgtgcggccctcacaatggaaaatgatgttgaacatcgatgtctctgcgaccgccttctataaagcccaaccagtgattgaattcatgtgcgaagttctggacatccgagacatcaacgaacagagaaaacctctgaccgattcgcaacgagtcaagtttaccaaagaaatcaaggggctgaaaattgaaatcacacattgcggaactatgaggcgaaaatacagagtctgtaatgtcacgcgcaaacctgcccagatgcaatcctttccattgcaactagagaatggacagacggtcgaatgtacagttgccaagtacttcttagataaatataaaatgaagctgcgttatcctcatcttccgtgccttcaagttggtcaggagcacaaacacacgtacttacctctcgaggtctgcaacatcgtggcaggtcagaggtgcattaagaaactgacggacatgcaaacgtcgacgatgatcaaagctacggctcgttctgctcctgatcgtgaacgggaaatcaacaatcttgtcagacgtgctgactttaataacgattcttacgtacaagaatttggattgacaatctcgaacaacatgatggaagttagaggacgtatcctacctccgcccaaacttcagtatggaggccgcgttagttccctcagtggacagacgaagcaacaagcgttgcccaatcaaggtgtgtgggacatgcgaggaaaacagttcttcactggtgtcgagattcgagtatgggcgatcgcgtgtttcgccccgcagagaacagttcgagaagatgcgttgcgtgccttcacaacgcaactacaaaaaatcagcaacgacgctggaatgccgataatcggacaaccttgcttctgtaaatatgccactggtcctgatcaagttgaaccgatgttccgatatctgaaatcaactttccagtctttacaattagtctgcgtagtcctgcctggaaaaactcctgtctatgccgaggttaagagggtaggcgatactctcttgggaatggcgacacagtgcgtgcaggcgaagaacgtaaacaaaacatccccacagacattgtcaaatctttgccttaagattaacgtgaaactcggcggtatcaatagcattttggtgccaagcatcagacccaaggtcttcaatgaaccggtcatcttcctcggagctgatgttacacatccacctgcaggcgataacaaaaaaccgagcatagcagctgtagttggaagcatggacgctcatccttcgcggtacgcagccacggttcgagttcaacaacacagacaggaaatcatccaggaactcagttccatggttagagagctgctgattatgttttacaagagcaccggcggctacaaaccacataggataatcctttaccgcgatgctatttctgaaggtcagtttttgcacgttcttcaacatgagttgacggccattcgtgaggcctgcatcaaattagaagccgattacaagcctggaataaccttcattgccgtgcaaaagaggcatcatacccgtttgttctgcgctgacaagaaggaacagagcggaaagagtggaaatattccggctggaacgacagtcgacgtgtgtatcacacatccgaccgagttcgacttctatctgtgcagtcaccaaggaatccagggaacctcgagaccttcgcattatcacgtcctttgggatgataatcattttgaaagtgacgagctacagtgtctcacctaccaactctgccacacatatgtcagatgtacgagatctgttagtataccagctccagcttactatgctcatttggttgcattccgtgctagatatcacttagtcgaaaaagaacatgacagcggagaaggatctcatcaatcgggctgcagtgaagatcgaacgcctggtgcgatggcacgagcgataacagttcacgccgacaccaagcgagttatgtattttgcgtaatttatatgcgcgtgttgatgatctgcgaaatcgccatatccactgaaggaaaaaattcgggagtaactggcaatatccgtaccgcactttatacccaagttgaaatctatgtattgcattcaccccagaattatttctttcagtgtctctgaaagtaacaaagcggagtaatagagagagggagagagagagagagagagagtagcatgctacttaagtgtgacgtttgacgtgctcgggcggccaatttttttgatagatcatttccaagtataatgtcgcacgtctgccgaacatcggagtgccaaataatttcactgcttgacaaaagaaaagaaagaaaaaagattagaaatcaaggtttccgtcaggggtgttcagttggcggacgattttcgatctctgtttgcttctcgatacaaagagtagattttaatgaaaaaggtgcttttagttaatcacgttttagattaaattaaggtctttcgcagattcacacgaaaaaaagggggagaatgaagaaagggattttatatagatttggcctgtgtgcctgaattacgcttatttttttcgaggtagtcgtatgtacctcaatgaatctggcatttgtattataataataatggaaaaaattacgctacacgcaaccatttcgcacttgagactgccaatctattattgtttatggtgaaatatttactctaaaaaaattacgaggcttaatataaccttacattcgaatcgacttgtttagaataattaatgatgaagagagtagagaaaaaaattggccaccttgagtgttgcgtcagtagtcaagaaaaaaacgcttgaaaagaaaaaagaacccaacaaagacatggagctgattttccaagagttaaataagcgaatggccaaagtaagttagaattttattagagtgaaattgggaattgtggcgaatcagggcactttttgttttgcctttataataatgctttcaattgggaaattactttgccacgattactgattttcgcattgctatgtgttctgtatcaaatcttgtcattctaaaatctaaatttacaagtcttttgactaacgaccaagtgtcagtaacacaactcatccaaacttatccaatgcttgttatgaactcaacattattaacaaatattcagcaccaccgaaataatattagttagactagctagcagtttaatcgggtggatggaactcgacagttggcagaagtagttgtaggattccagtaaatattgagcagataaacaacccgttagattaatgaaaagagtactaaatattattattattattattatcattatcatcaggagaatatccatacatttgataaatccttacgttccacacgcggcagaaaatatttccggaatccttttttggaacaataataatcatcatctaggcgtcatgataaataagtgaagaataacttttaagtgcatttcagagtcctctagatttatgtagagtagatagtaattcatattaggtagattaactatttataaccgagtattggctgtcgcacattcagagtttcatgcttaacgagaaaccctcgactggcgacttatttttcataaattttctgatggggaatggacgaaactcaaattgtcgagggtttcacgtcgtagatttacgaacataaagcaagcctcccagcgggttctgataaaaatttcaatttaatcaatcaataatagcttttcttattgtgaatggttaaactgcgatacgccgcatggtgacgaaaatccgaactagaaagaatgggtgcgattttaaagatgcattttaatttatgcataaaagaattttagcgattgttttaaattatttattgggtactaaaaataggcatttatcgtaaacaacggggtttagttataatttacatcttatatagtaaaaaagaaaaacaccttttttgacaaatatttttctgaaaaaaaaaaagcaattattgtgctatttattttgattttcaacagattataatatttaggagagaactcgtatttttaattctaatcgtctgttatttgcataatacgaacaaacttacatgaaatagtgaaataattgttttgtttttttcaaagcctatttgacacgaatgagttttttcactgtataagatagaaattctatgtaaacctatttgttcatttatgaagatttgtttttagcattcaataattgttttaaactttccgaaacaatcgtaaaaacacttttagggaaaaattaaaatacatatttaaaattgtacctactctttctagttccagttttcggcaacaggtggtgaaattgtagaccaccatccccaatacaaatgactaattcctaataaaagttcatatttaatttc
//

by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]