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2024-04-17 04:46:34, GGRNA.v2 : RefSeq release 222 (Jan, 2024)

LOCUS       XM_031902381            5024 bp    mRNA    linear   VRT 18-DEC-2019
DEFINITION  PREDICTED: Xenopus tropicalis titin homolog (LOC101735255),
            transcript variant X4, mRNA.
ACCESSION   XM_031902381
VERSION     XM_031902381.1
DBLINK      BioProject: PRJNA205740
KEYWORDS    RefSeq.
SOURCE      Xenopus tropicalis (tropical clawed frog)
  ORGANISM  Xenopus tropicalis
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae;
            Xenopus; Silurana.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_030681.2) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Xenopus tropicalis Annotation
                                           Release 104
            Annotation Version          :: 104
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5024
                     /organism="Xenopus tropicalis"
                     /mol_type="mRNA"
                     /strain="Nigerian"
                     /db_xref="taxon:8364"
                     /chromosome="5"
                     /sex="female"
                     /tissue_type="liver and blood"
                     /dev_stage="adult"
                     /note="F17 inbred"
     gene            1..5024
                     /gene="LOC101735255"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 4 ESTs, and 100% coverage of the
                     annotated genomic feature by RNAseq alignments, including
                     11 samples with support for all annotated introns"
                     /db_xref="GeneID:101735255"
     CDS             224..2956
                     /gene="LOC101735255"
                     /codon_start=1
                     /product="myb-like protein X isoform X4"
                     /protein_id="XP_031758241.1"
                     /db_xref="GeneID:101735255"
                     /translation="
MAKQSIDSKDDAKEKKNKLKEKIGEVLEKKDELKEKKDELKEKRDELKEKIGELKEKNDELKEKKDKLKEKKGELKEEEDLKEKIEDIMLGKVDDINNSIGEIKVQKHDIMEKKDELKEKKDELKEEEDLKEKIEDIMLGKVDDINNSIGEIKVQKHDIMEKKDELKEEKKEQKEKTENIIVNNKKQIDDMMKKKDKLKEEKKVQKAKTENIIEKRDDIVNNKEQIDDIMKKKDELKEEEKEQKGKTENVIEKRDDIVNNKEQIDDIMKKKDELKEEEKEQKEKTENVIEKSDDIVNNKEQIGDIRGNEDELKTSVEETGSDCIHDPAELTLTTESMEGVCEKNFLSFEKNPSALDKEEDLYTGTGTTDGDETTGQGRSDCTHNPGELTLTAESREGFGVPAKLNFEEGFLSGSVRKNPSAQDNGEDLYKYTGTADRDEQTGPGRSDCTRNPGELTLTAESMGGFGDKIPGAQNFEEEFLKNNLSAQNNEEDLYRGTMETDEKVGQDSTTEIILPTEKPECLEVGHEAQKNRKDMCPENSSANKPNVQPAAENGTMGREALSKRTEKHKLCRKKKKENEKIKNLGDPKLPDLPEIIVLLIRLMFSALISVRWNGWLRFLVPLLSICVTSSSLCSSCQIHEFCTGEDLLNQPLTISKAGKENFCSFQFTGHSLTAKCNELVVELSETRKCVLLYVPGLVYKDLFLEYGTGRTPPVPVALAGCCDNSPIGSSEANYSRQISAPPPTQSFTREPVEVAIIVPILIVGFLLIILVVYIYKRKRPKQGAAEHVGNQTDQRDVAIEMGRLGAVGATGDNHEPDKPHSNGEIVRVNQENLRPGGGAVSVKESPEEDRSEHNGDTVSPVGIPVQENPEMDLGTSSCPGETAPRDGVTEPLLIHKETHRGVRNSNENSL"
ORIGIN      
caaagccccctccctgctcctgccccacccatatctcatgaggcaaattccccagtcagcggagactcagtgcgacaggctcccagctaacaccttgcacctccaaaattgtatcatcctgtagggcgcagtctgtacaaagaagcaagatttatacatcgacgctgcaggaatttgggtggatttctatagaaatctcatttcagagagagttggaaccgagatggcaaaacagtccatcgattcaaaagatgatgccaaagagaaaaaaaataagctcaaggagaagataggtgaggtcctggagaagaaagatgagcttaaggagaagaaagatgagctcaaggagaagagagatgagctcaaggagaagataggtgagctcaaggagaagaatgatgagctcaaagagaagaaagataagctcaaggagaagaaaggtgagctcaaggaggaagaagatctgaaggagaagattgaggacataatgttagggaaggtagatgacatcaataacagcataggtgaaattaaagtgcagaaacatgacatcatggagaagaaagatgagctcaaggagaagaaagatgagctcaaggaggaagaagatctgaaggagaagattgaggacataatgttagggaaggtagatgacatcaataacagcataggtgaaattaaagtgcagaaacatgacatcatggagaagaaagatgagctcaaggaggagaaaaaagaacagaaggagaagacagagaacatcattgtcaacaacaaaaagcagatagatgacatgatgaagaagaaagataagctcaaggaggagaaaaaagtacagaaggcgaagacagagaacatcattgaaaagagggatgacattgtcaacaacaaagagcagatagatgacatcatgaagaagaaagatgagctcaaggaggaggaaaaagaacagaagggaaagacagagaacgtcattgaaaagagggatgacattgtcaacaacaaagagcagatagatgacatcatgaagaagaaagatgagctcaaggaggaggaaaaagaacagaaggagaagacagagaacgtcattgaaaagagtgatgacattgtcaacaacaaagagcagataggtgacatcagggggaatgaagatgagctcaagacgtcagtggaagagacggggagcgactgtatccatgatccagctgagctgacgctaactacagaaagcatggaaggcgtctgtgaaaaaaacttcttgtcttttgagaagaatcccagtgccctggataaagaagaggacttgtacacaggcacaggaacaactgatggagatgagacaacggggcagggaaggagtgattgtacccacaatccaggggagctgacacttactgcagaaagcagggaaggctttggagttcctgcgaaactaaactttgaggaggggttcttgtctgggtctgtgaggaagaatcccagtgcccaggacaatggagaggatttgtacaaatacacaggaacagctgatagggatgagcaaacagggccgggcaggagtgattgtacccgcaatccaggggagctgacactcactgcagaaagcatgggaggctttggagacaaaattcctggagcacaaaactttgaagaagagtttttgaaaaataatctcagtgcccagaacaatgaagaggatttgtacagaggaacaatggaaacagatgagaaagtggggcaggacagcaccacagagattatattgcccacagaaaagccagagtgtctggaagtgggccatgaagcccaaaagaacagaaaggacatgtgtccagagaactcatcagccaacaagccaaacgtccagccagcagccgagaatgggaccatggggagagaagccctcagtaaaagaacagagaagcacaaactttgtaggaagaagaagaaggaaaatgagaaaattaaaaatttgggggacccaaagcttcctgatcttcctgaaatcatagtcctactgatacgactcatgttttcagctctgatatcagtgcgatggaacggctggcttagatttctagttcccctgctgagcatctgtgttacgtcatcttcgttgtgttcctcgtgccaaatccatgaattctgcactggggaagatctgctgaaccagcccttgacaatcagtaaagccggcaaggagaatttctgcagtttccagtttactggccattctcttacagcaaaatgtaatgaattagtggtggaactgagcgagacacggaagtgtgtgctcctatacgtgccaggtctggtatataaggatttatttttggaatatggcactggccgtacacctcccgttccagttgcacttgcaggatgttgtgacaattccccaattggaagcagtgaagccaactactccagacagatttctgctcctccaccaacacagagctttactagggaacctgtggaagtggcaattatagtaccaattcttattgttggcttccttttaattatacttgtggtttatatatataaaaggaaaagacctaagcaaggtgccgctgagcatgtgggaaaccaaactgatcagagagacgtggctattgaaatgggacgactgggggcggttggtgctacaggggacaaccatgaaccagacaagcctcattctaatggggagattgtcagagtgaatcaagagaaccttagaccaggagggggcgctgtctccgtgaaggagagtcctgaagaagaccggagtgaacataatggggacaccgtttccccagtgggaattcctgtacaagagaatcccgaaatggatttgggtacaagctcttgcccaggagagactgcaccaagagacggtgtaactgagcctttactgatccataaggaaacacacaggggtgttagaaacagtaatgaaaactccctctaacgatgaggctaaattgcagcatcaccttcttggtggtcatttttaatgtttatattctacttgattattacgcatagcgctgacattaatgcacatattgtatctatatggtgtattgtatctgtaaacatggaatgtctgacatgtctgaccgctgtgcccatctcccatccatgatgccacctggtactgtggtgcatctggtggaactgggcccggtatctactggaaccaattgaggcagaaaaacaaaactggctatagcagtgggggatactggaaataattgtggtacaaatgatttagagttgattgttggccagtagtgccagaagccttcagtgccaagtgccttgcgccagcggttacaatagagggtctgggatggcagatacatggacacattcaagaaagggttgaattccttcttagcaagggagaaaatacacagttactgaaataaactcttagtactaggttggtacaaggactggtctgattgccctttagaagacaggaaggatttttttgggtggggtgttttgctttcctctggagcagatagaaaggtttcatttggacaaacagggtgaacctgatggacgtgtgtctttttacaaccacaaatactttgttaccatgttaatagtctgggcatatgtatcacagtggtacttctgcccctttgaggtttgctttgaaaccagagtaagcagaacagtcccttcccatcatcccccttagaacgggaagctgcccaatggggatagtggaacagcaggaagctgcccaatggggacagtggaacagcaggaagctgcccaatggggacagtggaacagcaggaagctgctcaatggggaaagtggaacagtaggaagctgcccaatggggatagtggaacaacaggaagatgcccaatggggatagtggaacagcaggaagctgctcaatggggacaggggaacagcaggaagctgcccaatggggacagtggaacagcaggaagctgctcaatggggatagtggaacagcaggaagctgctcaatggggacagtggaacagcaggaagctgcccaatggggatagtggaacaacaggaagatgcccaatggggatagtggaacagcaggaagctgctcaatggggacaggggaacaacaggaagatgcccaatggggatagtggaacaacaggaagatgcccaatggggatagtggaacagcaggaagctgctcaatggggacaggggaacagcaggaagctgcccaatggggacagtggaacagcaggaagctgctcaatggggatagtggaacagcaggaagctgcccaatggggatagtggaacagcaggaagctgctcaatggggacaggggaacagcaggaagctgcccaatggggatagtggaacaacaggaagatgcccaatggggatagtggaacagcaggaagatgcccaatggggatagtggaacagcaggaagctgcccaatggggatagtggaacaacaggaagatgcccaatggggatagtggaacagcaggaagctgctcaatggggacagtggaacagcaggaagctgcccaatggggacagtggaacaacaggaagctgcccaatggggatagtggaacaacattcccccttacagcagttcatctgatttaatacatttccattgagtctgcagggccaataactgaccagatccatattattagttactttatattacagtttccattattttgtccaccaccctgtttcttgatttcttgaatagagcggattaatggggtctcatttgaagcagatctgtctgttttcagaacaatacaccaggctttgctgcttttagttaattagtggaatatttactctgttgctcatgataggccgggagatgtagggtttcttagagagagaacaatggaaatgacataagactgaaacctttacagaagctatggggagtgacgagcaaatattttaatataataacatgaattactgtatgagctttgcttcttttaataaaatgattttcctgtttaactgataa
//

by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]