2024-05-02 13:44:30, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_030869398 4063 bp mRNA linear MAM 24-OCT-2023 DEFINITION PREDICTED: Globicephala melas protein argonaute-1 (LOC115860028), transcript variant X1, mRNA. ACCESSION XM_030869398 VERSION XM_030869398.2 DBLINK BioProject: PRJNA1026603 KEYWORDS RefSeq. SOURCE Globicephala melas (long-finned pilot whale) ORGANISM Globicephala melas Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha; Cetacea; Odontoceti; Delphinidae; Globicephala. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_083314) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Oct 24, 2023 this sequence version replaced XM_030869398.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_963455315.1-RS_2023_10 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.2 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 10/19/2023 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..4063 /organism="Globicephala melas" /mol_type="mRNA" /db_xref="taxon:9731" /chromosome="1" gene 1..4063 /gene="LOC115860028" /note="protein argonaute-1; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 7 Proteins" /db_xref="GeneID:115860028" CDS 204..2786 /gene="LOC115860028" /codon_start=1 /product="protein argonaute-1 isoform X1" /protein_id="XP_030725258.1" /db_xref="GeneID:115860028" /translation="
MEAGPSGAAAGTYLPPLQQVFQAPRRPGIGTVGKPIKLLANYFEVDIPKIDVYHYEVDIKPDKCPRRVNREVVEYMVQHFKPQIFGDRKPVYDGKKNIYTVTALPIGNERVDFEVTIPGEGKDRIFKVSIKWLAIVSWRMLHEALVSGQIPVPLESVQALDVAMRHLASMRYTPVGRSFFSPPEGYYHPLGGGREVWFGFHQSVRPAMWKMMLNIDVSATAFYKAQPVIEFMCEVLDIRNIDEQPKPLTDSQRVRFTKEIKGLKVEVTHCGQMKRKYRVCNVTRRPASHQTFPLQLESGQTVECTVAQYFKQKYNLQLKYPHLPCLQVGQEQKHTYLPLEVCNIVAGQRCIKKLTDNQTSTMIKATARSAPDRQEEISRLMKNASYNLDPYIQEFGIKVKDDMTEVTGRVLPAPILQYGGRVSRNRAIATPNQGVWDMRGKQFYNGIEIKVWAIACFAPQKQCREEVLKNFTDQLRKISKDAGMPIQGQPCFCKYAQGADSVEPMFRHLKNTYSGLQLIIVILPGKTPVYAEVKRVGDTLLGMATQCVQVKNVVKTSPQTLSNLCLKINVKLGGINNILVPHQRSAVFQQPVIFLGADVTHPPAGDGKKPSITAVVGSMDAHPSRYCATVRVQRPRQEIIEDLSYMVRELLIQFYKSTRFKPTRIIFYRDGVPEGQLPQILHYELLAIRDACIKLEKDYQPGITYIVVQKRHHTRLFCADKNERIGKSGNIPAGTTVDTNITHPFEFDFYLCSHAGIQGTSRPSHYYVLWDDNRFTADELQILTYQLCHTYVRCTRSVSIPAPAYYARLVAFRARYHLVDKEHDSGEGSHISGQSNGRDPQALAKAVQVHQDTLRTMYFA"
misc_feature 303..695 /gene="LOC115860028" /note="N-terminal domain of argonaute; Region: ArgoN; pfam16486" /db_xref="CDD:435368" misc_feature 723..875 /gene="LOC115860028" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:430160" misc_feature 876..1238 /gene="LOC115860028" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212" misc_feature order(1032..1034,1077..1079,1119..1121,1131..1133, 1185..1187,1206..1208,1212..1214) /gene="LOC115860028" /note="nucleic acid-binding interface [nucleotide binding]; other site" /db_xref="CDD:239212" misc_feature 1371..2657 /gene="LOC115860028" /note="PIWI domain, Argonaute-like subfamily. Argonaute is the central component of the RNA-induced silencing complex (RISC) and related complexes. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the...; Region: Piwi_ago-like; cd04657" /db_xref="CDD:240015" misc_feature order(1791..1793,1803..1805,1839..1850,1857..1859, 1881..1883,1890..1892,1902..1904,1914..1916) /gene="LOC115860028" /note="5' RNA guide strand anchoring site [active]" /db_xref="CDD:240015" misc_feature order(1995..1997,2001..2003,2211..2213,2625..2627) /gene="LOC115860028" /note="active site" /db_xref="CDD:240015" polyA_site 4063 /gene="LOC115860028" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN
cgggcgctagctgggggagctgctgcaggctccgcggcggcggctgcaacggaggctgcgggggcggcggcgcgagcggccgggcttgggggggtagccgagcccggcccgggagcccaagcagctaaagtgcggggtacctaggcccttcacgctggactccacagtctccgggccgcctgacctccgcacgggtatatgggatggaagcgggaccctcgggagcagctgcaggcacctacctgccccccctgcagcaggtgttccaggcacctcgccggcctggcattggcaccgtggggaaaccaatcaagcttctggccaactactttgaagtggacatccctaagattgacgtctaccactacgaggtggatatcaagccggataagtgtcctcgcagagtcaaccgggaagtggtggaatacatggtccagcatttcaagcctcagatctttggtgatcgcaagcccgtgtatgatggaaagaagaacatttacactgtcacagcactgcccattggcaatgaacgggttgacttcgaggtgacaatccctggggaagggaaggatcgaatcttcaaggtctccatcaagtggctagccattgtgagctggcgcatgctgcatgaggccttggttagtggccagatccccgttcccctggagtctgtgcaagccctggatgtggccatgaggcacctggcatccatgaggtacacccctgtgggccgctccttcttctcaccgcctgagggctactaccacccgctggggggtgggcgcgaggtctggttcggctttcaccagtctgtgcgccctgccatgtggaagatgatgctcaacattgatgtctcagccactgccttctacaaggcgcagccagtgattgagttcatgtgtgaggtgctggacatcaggaacatagatgagcagcccaagcccctcacggactctcagcgtgtgcgcttcaccaaggagatcaagggcctgaaggtggaagtgacccactgtggacagatgaagaggaaataccgcgtgtgtaatgttacccgccgccctgccagccatcagacgtttcccttgcagctggagagtggacagactgtggagtgcacagtggcacagtatttcaagcagaaatataaccttcagctcaagtatccccacctgccctgcctgcaagttggccaggaacaaaagcatacctacctgcccctagaggtctgtaacattgtggctgggcagcgctgcattaagaagctgactgacaaccagacttcaaccatgataaaggctacagctagatcggccccagacagacaagaggagatcagccgcctgatgaagaatgccagctacaacctagatccctacattcaggaatttgggatcaaggtgaaggatgacatgacggaggtgacggggcgagtgctgccggcgcccatcttgcagtacggcggccgggtgagcaggaaccgggccattgccacacccaatcaaggtgtctgggacatgcgggggaaacagttctacaatggaattgagatcaaagtctgggccattgcctgcttcgcaccccaaaaacagtgtcgagaagaagtgctcaagaacttcacagaccagctgcggaagatttccaaggatgcagggatgcccatccagggccagccttgcttctgcaaatatgcgcagggggcagacagcgtggagcccatgttccggcatctcaagaacacctactcagggctgcagctcattatcgtcatcctgccagggaagacgccagtgtatgctgaagtgaagcgtgttggagatacactcttgggaatggctacacagtgtgtgcaagtgaagaatgtggtcaagacctcgcctcagactctgtccaacctttgcctgaagatcaatgtcaaacttggtggcattaacaacatcctagttccacaccaacgctctgctgtctttcaacaaccagtgatattcctgggagcagatgttacacaccccccagcaggggatgggaaaaaaccttctatcacagcagtggtaggcagtatggatgcccaccccagccgttactgtgctactgtgcgggtgcagcgacctcggcaggagatcattgaagacttatcctacatggtacgtgagctgctcatccagttctacaagtccacccgcttcaagcctacccgcatcatcttctaccgagatggggttcctgaaggccagctcccccagatcctccactatgagctgctggccattcgtgatgcctgcatcaaactggaaaaggactaccagcccgggatcacttatattgtggtgcagaaacgccatcacacccgccttttttgtgctgacaagaatgagcgaattgggaagagtggtaacatcccagctgggaccactgtggacaccaacatcacccacccatttgagtttgacttctatctgtgcagccacgcaggcatccagggcaccagccgaccatcccattactatgtcctttgggatgacaaccgtttcacagcggatgagctccagatcttgacgtaccagctgtgccacacttacgtacgatgcacacgctccgtctcaattccagcacctgcctactatgcccgcttggtggctttccgggcacgataccacctagtggacaaggagcatgacagtggagaggggagccacatatcggggcagagcaatgggcgggacccccaggccctggccaaagccgtgcaggttcaccaggatactctgcgcaccatgtacttcgcttgaaggcagaacgctgttacctcactggatagaagaaagctttccaagccccaagagctgtgccgcccaaatccagaggaagcagggaggagggaggtggggcagggaggaatgcagaaggccttgtttcctctacagagggggcgaaagggtggggaacagggccagtaagccagaccaccagccagaaatctctgatattcacctcatgccctccacccctcaccccatcttgtcacatctggccctgactccactggaccaagagaggcagccccggtgcccaccatacacacagatgtcgcatgtgactcacagtgctaaagactcatgcctgacagcttggtaaggtcggccctgcagccctgcagacaaaagctggtaggtttgggtttgatactttagatgggaaagtgaggggcttgaaaagtgggtgggaggagggaaggattttttaggagccttaatcagaaaaggtctagatttgtttaagaagaaaaacgaaaccagatgcagatcaatattttaggatactagatgttttaatgggttgagaatccagcttgtaggaagatttttaatgctaatgatttggttgcccctcccccagctgccactcctctttcccttattcctctttttccaccttttctaccccaccttacaccttctccctgacagacatccagcccctagtaagacttaaggcactatggcacttagctctgaagtgacacgaccctgtcttccttccgcctgctggtgggtaaccagtgccttccctgtaacggtaatgctgcagaactgcaaccttttgtacctatttttgggggggtgggggcggggtgggggtgggagaggaggtaggtggggatgaaatacccctaacccaacaagcctccagccagagcgccagctactttgcatttgaaggagttgacttccatattcattgagcttttaaaaagatcgccacctcaagatggttaaaatccattgacatttgcactttcagacatgacaagtctctcggagctgctgaggtgactggcctctggcctttccacttacgtctcctttcttcctgtccctgcttcctccccacctgcctgggtctggagttactttcatagcatttctcactcttggcttcttttttttccctgacgatcaagtctgtttatgtttcaatattttttaactggggtgtcttttaacaaacgatccttaggtctaaaataagaaaaaaaaaaaaaagcaaaaactaaatgttattttta
//
by
@meso_cacase at
DBCLS
This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
[Full Text]