LOCUS       XM_030356989            3764 bp    mRNA    linear   VRT 09-JUL-2025
DEFINITION  PREDICTED: Gadus morhua NRDE-2, necessary for RNA interference,
            domain containing (nrde2), mRNA.
ACCESSION   XM_030356989
VERSION     XM_030356989.1
DBLINK      BioProject: PRJNA557709
KEYWORDS    RefSeq.
SOURCE      Gadus morhua (Atlantic cod)
  ORGANISM  Gadus morhua
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Actinopterygii; Neopterygii; Teleostei; Neoteleostei;
            Acanthomorphata; Zeiogadaria; Gadariae; Gadiformes; Gadoidei;
            Gadidae; Gadus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_044052.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_902167405.1-RS_2025_07
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.4
            Annotation Method           :: Gnomon; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 07/09/2025
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3764
                     /organism="Gadus morhua"
                     /mol_type="mRNA"
                     /db_xref="taxon:8049"
                     /chromosome="5"
     gene            1..3764
                     /gene="nrde2"
                     /note="NRDE-2, necessary for RNA interference, domain
                     containing; Derived by automated computational analysis
                     using gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 EST, 3 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 60 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:115544166"
     CDS             6..3626
                     /gene="nrde2"
                     /codon_start=1
                     /product="protein NRDE2 homolog"
                     /protein_id="XP_030212849.1"
                     /db_xref="GeneID:115544166"
                     /translation="

MTPSSCDHNAVHNINNMALFPAFAEVTATNLDDSSKDWLTNKSFRADDALALNERALKASRSQNQDDSREVSSEEEEEKKTRGEEDDKPPKKKKKKKEKKKNKKKHKKRDRSSSVSSGSGSDTVYPSDLKREQEREREKPAPLASRFSWLDDVRSPTEQPFCVDNKPDQANWTYKSLYRGDVARYRRKGSSSLGLDPRFQAISWEESEQSAKKKKKADVKRRRADRYFSKDSQELLRAETPVPSLPRIGAGDELPRMIDFITLAGEGGLSRGETAGRVLTSPANPLGVYDAGTALWAQGKGKQEAPEGQSQATAQDQRVASLSEKTGDYNRRLREEPGDTQLWMEFIHYQDEQSETGFGGGGEPDSAERRRASYRGVVEKKLSVAERAVALNPSCVALQLERLRLCRELWEPAALAKEWKKLVFLHPNSPSLWREYLLFTQSHFSTFTVSRVNAAYGKCLSTLSAVQDGSMVSHLAIAGTEEEMLDLFIQQCHFLRQCGHSEKAVSLFQAMMDFTFFKPDTVRGLPTRQQVEFFEPFWDSGEARIGEVGARGWKAWMLQQERGGWLQPSAEDDEDEEEEEEELKDRDRPRWELWLNVESSREATHWLPWRPEKGQSVEDCEDPDRQVLFDDIGPSLIHLASPELQRRLLLSFLSFMGMPVDSVLLGAPCQSSLLMEDLTLLTQGNDPQRPLSGYDLQNTGVHTVGHMTTLQGSRKWAGLGKQGEEFLTNAFHLLLPQLAPPHRAALSLCWIRYEKLKVLRCLCGGSKKRLRSQGKSSKRVAKRLLKEPDNRSALALWREYGHLEWLLGNADDARKVFSAATAMGGAKGLGCPALCDLCLLWAQLECEEGGAGEGRKGGPGDATSAPAVGVLTRLAEGTPSAPGAAAPTPVAVLKARRTYEQALTDRLAALEKDLRKWGEGKKGDGPKLRGLVGCYALYQHLTVGVQATNAVYGQAREGTEGLHRALTLASDNHAGASGGPGAAGTEAGRLCAQRLAFECEALAVQHAALLRYHLSTSVFPLATLRHALTSSLSAWPQCASLWTVYLQVENRYHSAGRARRFFHSVTRGRKDIVPRLFAIVAEQQRKQLVDATQRFESHDGALPILPENGLGNRIRGLFGNALLSEMGAHCPLLWRMYMHFLVSEGKLDNAKAIFYKALQNVPWSKGLYMDAVQLFPGHLQEFVDLMTEKELRLRLPLEELDILLED"

     misc_feature    483..>743
                     /gene="nrde2"
                     /note="MTR4-interacting domain (MID) found in nuclear
                     exosome regulator NRDE2 and similar proteins; Region:
                     NRDE2_MID; cd22200"
                     /db_xref="CDD:412062"
     misc_feature    990..1976
                     /gene="nrde2"
                     /note="necessary for RNA interference; Region: NRDE-2;
                     pfam08424"
                     /db_xref="CDD:462472"
ORIGIN      

attggatgacgccgtcttcctgcgaccataacgctgttcataacatcaacaacatggctctgttcccagctttcgcagaagtcacggccacaaacctggatgattcttccaaagactggttgacaaataagagctttcgagctgatgatgcattggctctcaacgaacgggctttaaaggccagcagaagtcagaaccaagatgattcaagggaggtgagctctgaggaggaggaggagaagaagacgagaggggaggaggatgacaagcctcccaaaaagaagaaaaagaagaaggagaagaagaaaaataagaaaaaacataagaagagggacaggagctcttcagtcagtagcgggtcgggctctgacaccgtttatcccagtgacctcaagagggagcaggagagagaaagggaaaagcctgctccgctggccagtcgtttctcctggcttgatgacgtgcgttcccccactgagcagccgttctgcgttgacaataaaccagatcaagctaactggacctacaagtccctgtacaggggggacgtggccaggtacagacggaagggctcgtcctcgctgggcctggaccctcgctttcaggcgatttcttgggaggagtcggagcaaagtgccaaaaaaaagaagaaagccgacgtcaagaggagaagggcggaccgatacttttcaaaggatagtcaggagctgctgagagccgagacccctgtgccatcactgcccaggatcggagcaggcgatgagctgccccgaatgatcgactttattaccctggctggtgaaggaggattaagcagaggagagactgcgggtagggtgctgacgtcgccggcgaaccccctgggcgtgtacgacgccggcacggccctgtgggcccaggggaaggggaagcaggaggcccccgagggccagagccaggccacggcccaggaccagagggtggccagcctgtctgagaaaacaggggattacaacaggcgcctgagggaagaaccaggagacacacagctatggatggagttcatacactaccaggatgagcagagcgagacggggttcggcggcgggggcgagccggactcggcggagcgccggcgggcgtcgtaccgcggcgtggtggagaagaagctgagcgtggcggagcgggccgtggccctcaacccgtcctgcgtggccctgcagctggagcggctgcggctctgcagggagctgtgggagcccgccgccctggccaaggagtggaagaaactggtgttccttcaccccaacagcccctccttgtggcgggagtacctgctgttcacccagagtcacttcagcaccttcaccgtgtccagggtcaacgcggcctacgggaagtgtctgagcacgctcagtgcggtgcaagacggcagcatggtgtctcacctggccatagcaggaactgaggaggagatgttagacctgttcatccagcagtgtcacttcctgcgacagtgtggccactctgagaaggccgtgtcactcttccaggctatgatggacttcaccttcttcaagcctgatacggttcgaggattgcccaccaggcagcaggtggagttctttgagccgttctgggacagcggggaggccaggatcggtgaggtgggggcccgagggtggaaggcctggatgcttcaacaggagagagggggctggctccagcccagtgcagaggatgacgaagacgaggaagaggaggaggaggagctgaaggatcgggacagaccaagatgggagctctggctgaatgtggagtcttccagggaggcaactcattggctgccctggaggccagaaaagggccaatcagtggaggactgtgaagacccagacagacaggtgttgtttgacgacatcgggccctcgttgatccacctggcgtccccagagctccagcgccgtctgctcctctccttcctgtccttcatggggatgcctgtggactctgtgctcctgggcgccccctgtcagagcagcctcctgatggaggacctcactctgctcacacagggcaacgacccccagcgacctctgagcggctacgacctccagaacacgggagtccacacggtgggtcacatgacaacgctgcaggggtcaaggaagtgggcggggctcgggaagcaaggggaagagttcctcaccaacgccttccacttgctcctcccacaactggccccgccccaccgggcggccctgtcactctgctggatacgctatgagaaactcaaggtcctgcgctgtctctgcggtggcagcaagaagcgcctgcgctcccagggcaagagcagcaagcgcgtggccaagcggctgctcaaggagcccgacaaccgctccgccctggcgctgtggcgggagtacggccacctcgagtggctcctgggcaacgccgacgacgcccgcaaggtgttctcggccgccaccgccatgggaggagccaaggggctgggctgccccgccctctgcgacctctgcctgctgtgggcccagctggagtgtgaggaggggggcgccggggaggggaggaagggcggccccggggacgcgacctccgccccggccgtgggcgtcctcacccggctggcggaggggaccccctccgcccccggggccgcggcgcccaccccggtggcggtgctgaaggccaggaggacttatgagcaggccctgacggaccgtctggctgccctggagaaagacctccgcaagtggggagagggcaagaaaggagacggaccgaagctaagaggcctggtgggctgttacgccttgtaccagcatctgacggtcggcgtgcaggcgaccaacgcggtgtacggccaagctcgggagggaacggaggggctgcaccgggcgctgaccctggcctctgataaccacgccggcgccagcgggggtccgggcgccgccggcacagaggccggcagactctgcgcccagaggctggcgtttgagtgcgaggcgttggccgtccagcacgcggcgctgctcagataccacctcagcaccagcgtgtttcccctggccacgctgagacacgccctcacctcctcgctctccgcctggccccagtgcgcctccctctggaccgtttacttgcaggtggagaaccggtaccacagcgcaggacgggcccgccgcttctttcactcggtgacccggggacgcaaggacatcgtgccacgcctctttgctattgttgccgagcaacaaaggaagcagctggtggacgcgacccagcggtttgaatctcatgatggcgctctacccatcttgccggaaaatggccttggcaaccgtatccggggcctgtttggaaacgcccttcttagtgagatgggtgcccactgtcctctactctggcggatgtatatgcacttcctggtatcggagggtaagctggacaatgccaaagcgatcttctacaaggccttgcagaacgttccctggtctaagggtttgtacatggacgcagtgcagctattccccggacacctccaggagtttgtggacctcatgacggagaaggaactgcgtctcagactgcccctagaggagttggatatactacttgaagattgaatgaacaagcagacattcatgtgaacaaaatgttattcattcttagcctaaaaattatttgatgagaaaggtttttttcatgtatataggtacatcaaatatactttttgagaattggaataaaagtgttttttagaa

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