2024-04-19 21:45:44, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_030039172 6801 bp mRNA linear VRT 03-MAY-2021 DEFINITION PREDICTED: Aquila chrysaetos chrysaetos protein argonaute-1 (LOC115351835), transcript variant X1, mRNA. ACCESSION XM_030039172 VERSION XM_030039172.2 DBLINK BioProject: PRJNA556399 KEYWORDS RefSeq. SOURCE Aquila chrysaetos chrysaetos ORGANISM Aquila chrysaetos chrysaetos Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Accipitriformes; Accipitridae; Accipitrinae; Aquila. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_044019.1) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process On Apr 30, 2021 this sequence version replaced XM_030039172.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Aquila chrysaetos chrysaetos Annotation Release 101 Annotation Version :: 101 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.6 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..6801 /organism="Aquila chrysaetos chrysaetos" /mol_type="mRNA" /sub_species="chrysaetos" /db_xref="taxon:223781" /chromosome="16" gene 1..6801 /gene="LOC115351835" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 22 ESTs, 48 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 9 samples with support for all annotated introns" /db_xref="GeneID:115351835" CDS 108..2681 /gene="LOC115351835" /codon_start=1 /product="protein argonaute-1" /protein_id="XP_029895032.1" /db_xref="GeneID:115351835" /translation="
MEAGPSGAAAGAYLPPLQQVFQAPRRPGIGTVGKPIKLLANYFEVDIPKIDVYHYEVDIKPDKCPRRVNREVVEYMVQHFKPQIFGDRKPVYDGKKNIYTVTALPIGNERVDFEVTIPGEGKDRIFKVSIKWMAIVSWRMLHEALVSGQIPVPLESVQALDVAMRHLASMRYTPVGRSFFSPPEGYYHPLGGGREVWFGFHQSVRPAMWKMMLNIDVSATAFYKAQPVIEFMCEVLDIRNIDEQPKPLTDSQRVRFTKEIKGLKVEVTHCGQMKRKYRVCNVTRRPASHQTFPLQLESGQTVECTVAQYFKQKYNLQLKYPHLPCLQVGQEQKHTYLPLEVCNIVAGQRCIKKLTDNQTSTMIKATARSAPDRQEEISRLMKNASYNLDPYIQEFGIKVKDDMTEVTGRVLPAPILQYGGRNRAIATPNQGVWDMRGKQFYNGIEIKVWAIACFAPQKQCREEVLKNFTDQLRKISKDAGMPIQGQPCFCKYAQGADSVEPMFRHLKNTYSGLQLIIVILPGKTPVYAEVKRVGDTLLGMATQCVQVKNVVKTSPQTLSNLCLKINVKLGGINNILVPHQRSAVFQQPVIFLGADVTHPPAGDGKKPSITAVVGSMDAHPSRYCATVRVQRPRQEIIEDLSYMVRELLIQFYKSTRFKPTRIIFYRDGVPEGQLPQILHYELLAIRDACIKLEKDYQPGITYIVVQKRHHTRLFCADKNERIGKSGNIPAGTTVDTNITHPFEFDFYLCSHAGIQGTSRPSHYYVLWDDNRFTADELQILTYQLCHTYVRCTRSVSIPAPAYYARLVAFRARYHLVDKEHDSGEGSHISGQSNGRDPQALAKAVQVHQDTLRTMYFA"
misc_feature 207..599 /gene="LOC115351835" /note="N-terminal domain of argonaute; Region: ArgoN; pfam16486" /db_xref="CDD:435368" misc_feature 627..779 /gene="LOC115351835" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:430160" misc_feature 780..1142 /gene="LOC115351835" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212" misc_feature order(936..938,981..983,1023..1025,1035..1037,1089..1091, 1110..1112,1116..1118) /gene="LOC115351835" /note="nucleic acid-binding interface [nucleotide binding]; other site" /db_xref="CDD:239212" misc_feature 1275..2552 /gene="LOC115351835" /note="PIWI domain, Argonaute-like subfamily. Argonaute is the central component of the RNA-induced silencing complex (RISC) and related complexes. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the...; Region: Piwi_ago-like; cd04657" /db_xref="CDD:240015" misc_feature order(1686..1688,1698..1700,1734..1745,1752..1754, 1776..1778,1785..1787,1797..1799,1809..1811) /gene="LOC115351835" /note="5' RNA guide strand anchoring site [active]" /db_xref="CDD:240015" misc_feature order(1890..1892,1896..1898,2106..2108,2520..2522) /gene="LOC115351835" /note="active site" /db_xref="CDD:240015" ORIGIN
gcggcgggcggcggtgcagtcaccggccccggccctgcccggcccctgcccgcggccccggcccctgcccgcggcccccggctcggagcggcgcccgcgtggatgggatggaagcgggaccctccggagcagctgcaggcgcatacctgccaccattgcagcaggtgtttcaagcgccgcgtcggcccgggataggaaccgttgggaagcccatcaagctcttggccaactactttgaagtggacattcccaagattgatgtgtatcattatgaagtggatatcaaacctgacaaatgtccacgcagagtcaacagggaagtcgtggagtacatggtacagcacttcaaaccgcagatctttggcgaccgaaagccagtctacgatgggaagaagaacatctacactgtcacagccttacccattggaaacgagcgggttgactttgaggtgacgatcccaggggaaggcaaggacaggatatttaaggtctccatcaaatggatggccattgtgagctggcgcatgctgcacgaggccctggtcagcgggcagatccctgtccccctggagtccgtccaggcgctggatgttgccatgaggcacttggcttccatgaggtacactcccgttggccgctccttcttctccccccccgaaggctactaccatcccctgggaggcggcagggaggtctggttcggtttccaccagtcggtcaggcctgccatgtggaagatgatgctcaacattgatgtgtcggccaccgcgttctacaaagcccagcccgtaattgagttcatgtgcgaggtgctggacatccggaacatcgacgagcagccgaagcccctgacggactcgcagagagtgcgtttcaccaaggagatcaaaggtctgaaagtcgaggttacccactgcgggcagatgaagaggaaataccgtgtgtgtaacgttaccaggcggccggccagccaccagacgtttcccctgcagctggagagcggtcagacagtggagtgcacagtggctcagtactttaagcagaaatacaacctgcagctgaaatacccccacctaccctgtctccaggttggccaggagcagaagcacacatacctgcccttggaggtgtgcaacatcgtggcaggccagcggtgcatcaagaagctcacagacaatcaaacgtcaaccatgataaaagcaacagccaggtctgccccagacaggcaggaggaaatcagtcgcctgatgaagaacgccagctacaacctggatccgtacattcaggagtttgggatcaaggtgaaagatgacatgacggaggtgacagggagggtcctgccggcgcccatcctgcagtatggaggcaggaaccgggccattgcaactcccaaccaaggcgtgtgggacatgcgagggaagcagttctacaacggcattgagatcaaagtctgggcgattgcttgctttgccccgcagaagcagtgtcgagaggaggtgctgaagaactttacagaccagctgcgcaagatctccaaggatgcagggatgccgatccaaggccagccctgtttctgtaaatacgcccagggtgcagacagtgtggagcccatgtttcgacacctcaagaacacctattcagggcttcagctcatcattgtcatcctgccagggaaaacaccggtctacgctgaggtgaagcgcgttggggacaccctcctgggaatggccacgcagtgtgtccaggtcaagaacgtggtgaaaacctccccgcagaccctttccaacctctgcctcaagatcaacgtcaagcttggcgggatcaacaacatccttgtgcctcaccagcgctctgccgtctttcagcagccagtgattttcctcggggctgatgtcactcacccgccagcaggagatgggaagaaaccctccataacggctgttgtgggcagcatggatgcccacccgagccggtactgtgccacggtgcgcgtgcagcgtcctcggcaggaaatcatcgaggacttgtcctacatggtgagggagcttctcatccagttctacaaatccacccgcttcaaacccaccaggatcatcttctaccgtgatggtgttcccgaggggcagctcccgcagatccttcactatgagctcctagcaatccgagatgcctgcatcaaactggaaaaggattaccagcctggcatcacctacattgtcgtccagaaaaggcatcacacccgtctcttctgtgcggacaagaacgagaggattgggaagagtgggaacatcccagcaggaacaacagtggatacaaatatcacccacccctttgagttcgacttctacctgtgcagtcatgcaggcattcagggtacgagccggccatcccattactatgtgctctgggatgacaaccggttcaccgcggatgaactgcagatcctcacgtaccagctgtgccatacctacgtgcgctgcacccgctcggtctccatcccggccccggcgtactacgcccggctggtggcattcagagcacggtaccatctcgtggacaaggagcatgacagtggtgagggcagccatatatctggacagagcaacggcagagacccccaggccttggcgaaggctgtgcaggttcatcaggacactttacgtaccatgtactttgcttgaaagcctaacttttgttacctcactcaagaaagctttcagatttgtaggagccatacaaaagaggaagcattgggacaccttgttttttttccaatgagaaatcactgcagggcaggcagcgtcgattcgaggcaggagaccagcaccacgggacagaaagatccaacacctttgtaggattggaagagactgatgattatttttttaatttttctggctttgcaaaattttgacctgaccaaacacatgaaggcattcaaggaagggataaaactcccaggaggcggaagcaggttttcatttttaagatgcaatactatagactcctgactgtgaaatggcggatttggtcctccgttgcccaccaggcgctggtaggtattttttgtgggggttggggggaggggatttttagagccttaaaacagaagactagatttataaaactaatattttagaatatgagatgctttaatgggttaaggggaaaaacaactagtttataggagaattctaacactaacagttccccgcccccgaataattccccccatataatgtaaggcaccctagcacttagctcagaactgaaaactgtcttccttgtgttaaaagctagttagctgctgccatttgaagcaacagtcacagacttttccatgggtgagtgccttactatgatgctgcaaaatttcaatgtttttaatcttgtaaggaaaatagtaatcttgtcttgatggtggtccatatttccatcagaaggagttaatttctacggtcctaagttgcagtttgtgttagatcatgacctcatggtggttaaactccattgaaagatgtgcactttcatataggacacgtttaatggctgctgacccatttttgtttccaatgtactacttgttatttaaaactgtttctgacaaatgggggcatcttcatcccatgaggacggaaatcgctatcaatttttttctctttttttttttttcctgaattcttatgatggacaccgggatttttttactaaacattatttttatacgatactgagtctgttgccaaaatacacaagtcattaacattctcagagtttacatcaccgcaattcctgaggctgtgcgctcacaccagagatttctaacgtttcctgtccgatgagtgttaccaactgcagtccgtgcagcgccaggtactcctcagcgcccgtctcccatgtgcgttcagcacatgtctgcccgggtcggctgctttccgaagtaccgcgtaccccaactccagcacctccaaactgtcaccctctctgctgctaggttttgctgctcttcgtgtcatggtatcactgatctcatgcacagggttttttattctgaaagcacaccagatttgttccttagtcagaatgatgaaatccttgttattgtcgtgggggaaactcctactgatctgtgtttgtaacaggaaaaaagcctttttcccaacagtaacatagtgactgcttttcagactcattttgctgcacagaatgaccgttatgcacagtggggcagtagtagcaactcattaccagtatcatgtgggcagattatctgggttttttatatgaaagtgtgcacagtgcttccttcaagagaaaaaaatgacacgcacactcctaccaagctcttaaagggaagagctctgttatcattttactgccaaacgtgaacgcatttccaaggcagatccaccacaagcactgccccttgtcagtacgcgtggatagaagcacacctttttgttttgtactttctgacgtttaaacttgccttgccttcatgaaaaccacattggtcatgttggcccattgatctgtcctaacaccgggaattcactctacccgttttctttttgggcaacgtgtttgtgaaaaatgaagacatcaatatgctatgcaaactaagtgctgagcccactgatgtcacgttttgtgaagatcctacgtttagcacagtcctttttttcctcaagactacagtatttggttcatattctcctttgcaccttgtgtcaacctccactgctgtatatctgcaaggtgacagggaggagaccaggaactattcatggtcagtagggtagtgaactcttaggaaggcttttagagagtagggaatgcatcaacactaagtgtcaacatgagaagcctacattcctatacacaagtgcctgcatagtgacacaaattcagcacctctccatctcatcctcagaactctggcttgtgttcattgaaagcaaaatgatctcagaggggctgtacccgctcaccttgtgttagaaagcccctcgttaagaatcaaatcggggttaaggtcaaggttctctctgcaaatcagtttgttcaccagcattacaatggaaagcccctggctgctgttctgcagcgaggggcaaaggtattttggtttctagtttttattttagtgttttagttgggtctagaattctgaaatgtcttttagtagctgtggcatagcacgtgccatttttaaccatttgaaaagagatagcgtgggcatttacagaaacagcttgttgctctgtaacaattttttttaaccttgagacttgaaatgtaaaatggacctttaagatttgcactcatttgtaaggtggctgttcatagaaaactatgaatgaagacttgctgatgtagcacctacttttaacagcaattttaactacacaaaagcttcacagcttctgaaactctcagctgttgacttgcagatcgtgttctgcccttatttcaccctctgcgttgggttttcatggttttgaataaataaaaaagccaaactcagtagctgctgtgccctttaaaccctatttccattttgaagaaatttagaaggggtttgagttacccgcatgttttctataatggactatgcactgtaccttctacgcggctccagcattcagcatttctacccttttcttgtccgagatgcaaatgagtaactgcatgttgaggtgctgtgcattttgctacctatagcggataggtgttaacccagatacatatcaggatttgtagttagccacaaaccccacacggacatcccgaatggctcccgagtctctgccttctccatgcgcacgtgttccttctgcaactggaaacatcgccaggtgcatgcagttttgtgggaagaggaataactttcatttgcctgtcagttgttgaatgctgtttgtttcccttatctcacatctgaacataacgggggcgagagggcagagcagccttctccccagagcttccaggggcggtcggggtgttctggtattcgcaagcatacgacctgatgttttagtgtcaaaaagcccaagcattcaacgttgcctcgcggaaggttttcttcttggaaaatcagtgtgaaataaaagaatgtgattctttcaggaagggaagccagacagcaggacagcaataaacaagtgaaattcatatcttgcctgagtgatttgcacttcaatagttgtgaaagaaaatttacgggactccagtgcttttgtgttcaatttctagcccctttcatacctcctttatacgagcaagtgttgaactgtacatagggtgtttacaagacactctgtttgggttgttatttttcttgtgggtttttttttttttttgctttagcttgaactctgtatggtccatttgttaaatagacgtgaacagttgatgtacagtacttactaaacaagcagcagcacaaaacttattttattaagaaaatatggcttatattttaaaggttgaatatcaggttggtttttttttttttttgtatgcgtggaattaagactggtaaagagtaacaaaatccttggattaggccaaaagaaaatactgtaagatcgtaaccacctctttattaaagaaaacggtatgattaaagagctccagaacattgtatttatatttgatttgattgcctttgtggattttttttttttttttttgccttggtcctgatttttgcttgcaactttgactttgcagtcccaagtatctgttaccctgtaactgttggcagaagacctaaataaaagcaatgtgaacatg
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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