2024-04-25 22:31:41, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_030010698 1456 bp mRNA linear VRT 03-MAY-2021 DEFINITION PREDICTED: Aquila chrysaetos chrysaetos distal-less homeobox 5 (DLX5), mRNA. ACCESSION XM_030010698 VERSION XM_030010698.2 DBLINK BioProject: PRJNA556399 KEYWORDS RefSeq. SOURCE Aquila chrysaetos chrysaetos ORGANISM Aquila chrysaetos chrysaetos Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Accipitriformes; Accipitridae; Accipitrinae; Aquila. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_044006.1) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process On Apr 30, 2021 this sequence version replaced XM_030010698.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Aquila chrysaetos chrysaetos Annotation Release 101 Annotation Version :: 101 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.6 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..1456 /organism="Aquila chrysaetos chrysaetos" /mol_type="mRNA" /sub_species="chrysaetos" /db_xref="taxon:223781" /chromosome="3" gene 1..1456 /gene="DLX5" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 7 ESTs, 17 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 8 samples with support for all annotated introns" /db_xref="GeneID:115339967" CDS 225..1097 /gene="DLX5" /codon_start=1 /product="homeobox protein DLX-5" /protein_id="XP_029866558.1" /db_xref="GeneID:115339967" /translation="
MTGVFDRRVPNIRSGDFQAPFQTAAAMHHPSQESPTLPESSATDSDYYSPAGGAPHGYCSPTSASYGKALNPYQYQYHGMNGSAGNYPAKAYADYSYASPYHQYSGAYNRVQSSASQPEKEVAEPEVRMVNGKPKKVRKPRTIYSSFQLAALQRRFQKTQYLALPERAELAASLGLTQTQVKIWFQNKRSKIKKIMKNGEMPPEHSPSSSDPMACNSPQSPAVWEPQGSSRSLSHHAHAHAHPPNSNPSPASSYLESSASWYPAANSINSHLQPHGSLQHPLALASGTIY"
misc_feature 318..578 /gene="DLX5" /note="Homeobox protein distal-less-like N terminal; Region: DLL_N; pfam12413" /db_xref="CDD:432536" misc_feature order(636..650,654..656,705..707,723..725,762..764, 768..773,780..785,789..797,801..806) /gene="DLX5" /note="DNA binding site [nucleotide binding]" /db_xref="CDD:238039" misc_feature 642..803 /gene="DLX5" /note="Homeobox domain; Region: Homeobox; pfam00046" /db_xref="CDD:425441" misc_feature order(642..644,651..653,771..773,780..785,792..794) /gene="DLX5" /note="specific DNA base contacts [nucleotide binding]; other site" /db_xref="CDD:238039" ORIGIN
tggacgagttagggtgtcgctgctcccgattgctctggccaatggaacccgatccaccctgctgtgcgtaagagcgcaattaaggatttaaccaagcctatgctgcgccccagccagcagtctgccggagacagacacagcgccgcagcctcctcccccagacatgtctgcttagacccgagcagccccagcagccagccccagccagccgccggctccgagctatgacaggagtatttgacagaagggtccccaacatcagatccggcgacttccaggctcctttccagacggccgcagccatgcaccacccgtcccaggaatctcccactttacccgagtcctcggctacggattccgactactacagcccggcggggggagccccgcacggctactgctcgcctacctcggcttcttacggcaaagcgctcaacccttaccagtatcagtaccacggcatgaacggatctgctgggaactatcctgccaaagcctacgcagactacagctacgccagcccctaccaccagtacagcggggcttacaaccgcgtacagagctccgccagccagccagagaaggaggtggcggagcccgaggtgaggatggtgaacggcaaaccaaagaaagtgcgcaaaccccggactatttattccagctttcagctggcggcgttgcagaggaggtttcagaagacccagtacctcgccctgccagagcgggccgagctggccgcctccctggggctcacgcagacacaggtgaaaatttggtttcagaataaaagatccaagatcaagaagatcatgaagaacggggagatgcccccggagcacagccccagctccagcgaccccatggcctgcaactctccacagtcgccggcggtttgggaacctcagggctcgtcccgctccctcagccaccatgcccacgcgcacgctcaccctccaaactccaacccgtcccctgcatccagctacctggagagctccgcttcctggtaccccgctgccaactccatcaactcccacctccaaccccacggctccctacagcacccgttagcgctggcctctgggacaatttattagagtctgacctttttttttttttttttttttttttttgttccttggactcctgtgttttactgttaaaggaataataacgaaaggaatgcatatgggggatttttaaagggaaaagaaacaaacaaaaagattaaaatgtgtaaagcttgtgcatgtaacttattgcatttcaaaggaaacccttttttatacaatacggacattttttggctcagctgtggacactatcaatggtgccttgaaatctatgacctcaacttttccagagactttttttcaatgttattttaaccctgtaaataattgtagatagaggaattaaactgtatattctgaataaaataaaattatttcgacca
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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