2024-03-29 19:07:18, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_029949238 9381 bp mRNA linear MAM 14-JUL-2019 DEFINITION PREDICTED: Suricata suricatta argonaute RISC catalytic component 3 (AGO3), transcript variant X2, mRNA. ACCESSION XM_029949238 VERSION XM_029949238.1 DBLINK BioProject: PRJNA553468 KEYWORDS RefSeq. SOURCE Suricata suricatta (meerkat) ORGANISM Suricata suricatta Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Feliformia; Herpestidae; Suricata. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_043707.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Suricata suricatta Annotation Release 100 Annotation Version :: 100 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.2 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..9381 /organism="Suricata suricatta" /mol_type="mRNA" /isolate="VVHF042" /db_xref="taxon:37032" /chromosome="8" /country="South Africa: Kalahari Meerkat Project" /lat_lon="26.98 S 21.83 E" /collection_date="02-Feb-2016" gene 1..9381 /gene="AGO3" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 41 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 5 samples with support for all annotated introns" /db_xref="GeneID:115299755" CDS 305..2887 /gene="AGO3" /codon_start=1 /product="protein argonaute-3 isoform X2" /protein_id="XP_029805098.1" /db_xref="GeneID:115299755" /translation="
MEIGSAGPVGAQPLLMVPRRPGYGTMGKPIKLLANCFQVEIPKIDVYLYEVDIKPDKCPRRVNREVVDSMVQHFKVTIFGDRRPVYDGKRSLYTANPLPVATTGVDLDVTLPGEGGKDRPFKVSIKFVSRVSWHLLHEVLTGRTLPEPLELDKPISTNPVHAVDVVLRHLPSMKYTPVGRSFFSAPEGYDHPLGGGREVWFGFHQSVRPAMWKMMLNIDVSATAFYKAQPVIQFMCEVLDIHNIDEQPRPLTDSHRVKFTKEIKGLKVEVTHCGTMRRKYRVCNVTRRPASHQTFPLQLENGQTVERTVAQYFREKYTLQLKYPHLPCLQVGQEQKHTYLPLEVCNIVAGQRCIKKLTDNQTSTMIKATARSAPDRQEEISRLVRSANYETDPFVQEFQFKVRDEMAHVTGRVLPAPMLQYGGRNRTVATPSHGVWDMRGKQFHTGVEIKMWAIACFATQRQCREEILKGFTDQLRKISKDAGMPIQGQPCFCKYAQGADSVEPMFRHLKNTYSGLQLIIVILPGKTPVYAEVKRVGDTLLGMATQCVQVKNVIKTSPQTLSNLCLKINVKLGGINNILVPHQRPSVFQQPVIFLGADVTHPPAGDGKKPSIAAVVGSMDAHPSRYCATVRVQRPRQEIIQDLASMVRELLIQFYKSTRFKPTRIIFYRDGVSEGQFRQVLYYELLAIREACISLEKDYQPGITYIVVQKRHHTRLFCADRTERVGRSGNIPAGTTVDTDITHPYEFDFYLCSHAGIQGTSRPSHYHVLWDDNCFTADELQLLTYQLCHTYVRCTRSVSIPAPAYYAHLVAFRARYHLVDKEHDSAEGSHVSGQSNGRDPQALAKAVQIHQDTLRTMYFA"
misc_feature 521..805 /gene="AGO3" /note="N-terminal domain of argonaute; Region: ArgoN; pfam16486" /db_xref="CDD:435368" misc_feature 833..985 /gene="AGO3" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:430160" misc_feature 986..1348 /gene="AGO3" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212" misc_feature order(1142..1144,1187..1189,1229..1231,1241..1243, 1295..1297,1316..1318,1322..1324) /gene="AGO3" /note="nucleic acid-binding interface [nucleotide binding]; other site" /db_xref="CDD:239212" misc_feature 1481..2758 /gene="AGO3" /note="PIWI domain, Argonaute-like subfamily. Argonaute is the central component of the RNA-induced silencing complex (RISC) and related complexes. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the...; Region: Piwi_ago-like; cd04657" /db_xref="CDD:240015" misc_feature order(1892..1894,1904..1906,1940..1951,1958..1960, 1982..1984,1991..1993,2003..2005,2015..2017) /gene="AGO3" /note="5' RNA guide strand anchoring site [active]" /db_xref="CDD:240015" misc_feature order(2096..2098,2102..2104,2312..2314,2726..2728) /gene="AGO3" /note="active site" /db_xref="CDD:240015" ORIGIN
ggcggcgccgcagtcgtggaggggcagtgggagcgtaagcggctgcgggcgacgcaagttccgcacggggctctcctctcctcgattcacgcttctcgttctctcgcctagtctaatgctgcctccccacggcggctcttcctgacgagagctttcggagtgcggtagctgaggagaagccgtcgccacctcgcctcggggccgaacgagggtgcctgtagcgccgcgtcgcccccttgcgctgcctccttgcccccagtggtgggcgcccttctcgctcgaagcactccccgcagctccatgaatggaaatcggctccgcaggacccgttggggcccagcccctactcatggtgcccagaagacctggctatggcaccatgggcaaacccattaaattgctggctaactgttttcaagttgaaatcccaaagattgatgtctacctctatgaggtagatattaaaccagacaagtgtcctaggagagtaaacagggaggtggttgactcaatggttcagcattttaaagtgactatatttggggatcgtagaccggtttatgatggaaaacgaagcctttacacagccaatccacttcctgtggcaaccactggggtagatttagatgttactttacctggggaaggtggaaaagatcgacctttcaaggtgtcgattaagtttgtctctcgggtgagttggcacctactacatgaagtactgacaggacggaccttgcctgagccgctggaattagacaagccaatcagtactaatcctgtccatgctgttgatgtggtgctacgacatctgccctccatgaaatatacgcctgtggggcgttcctttttctcagctcccgaaggatatgaccaccccctgggagggggcagggaagtatggtttggattccatcaatctgttcgacctgccatgtggaaaatgatgcttaatattgacgtttctgccactgccttctacaaagcacaacctgtaattcaattcatgtgtgaagttcttgacattcataatattgacgagcaaccaagacctctgactgattctcatcgggtaaaattcaccaaagagataaaaggtctgaaggttgaagtgactcattgtggaacaatgaggcggaaataccgtgtttgtaatgtaacaaggaggcctgccagtcatcaaacctttcctttacagttagaaaatggccaaactgtggagagaacagtggcacagtatttcagagaaaagtatactcttcagctgaagtatccacaccttccttgtctgcaagtggggcaggaacagaaacatacctacctgccactagaagtctgtaatatcgtggcagggcaacgatgtatcaagaagctaacggacaatcagacatccactatgatcaaagcaacagcaagatctgcgccagatagacaagaggaaattagcagattggtaagaagtgcaaattatgaaacagatccatttgttcaggagtttcaatttaaagttcgggatgaaatggcccatgtaaccggacgcgtactcccagcacctatgctgcagtatggaggacggaatcggacagttgcaacaccaagccacggagtatgggacatgcgagggaaacagttccacacaggagttgaaataaaaatgtgggctatagcttgtttcgccacacagaggcagtgcagagaagaaatattaaagggtttcacggaccagctgcggaagatttccaaggatgcagggatgcccatccaaggccagccttgcttctgcaaatatgcgcagggggcagacagcgtggagcccatgttccggcatctcaagaacacctactcagggctgcagctcattatcgtcatcctgccagggaagacgccagtgtatgcggaagtaaaacgtgtaggagatacacttttgggtatggcaacacagtgtgtccaagtcaagaatgtaataaaaacatcccctcaaactctctcaaacttgtgcctaaagataaatgttaaactcggagggatcaataatattcttgtacctcatcaaagaccttctgtgttccagcaacccgtgatctttttgggagcagatgtcactcatccaccagctggtgatgggaagaagccttctattgctgctgttgtaggtagtatggatgcccacccaagcagatactgtgccacagtaagagttcagagacctcgacaggagatcatccaggacttggcttccatggttcgagaacttctcatacaattttataagtcaactcggttcaaacctactcgtatcatcttttatcgggatggtgtttcagagggacagtttaggcaggtattatattatgaactactagcaattcgagaagcctgcatcagtttggaaaaagactatcaacctggaataacctacattgtagttcagaagagacatcacactcgattgttttgtgctgataggacagaaagggttggacgaagtggcaatattccggctggaacgacagttgatacggacattacacacccatatgagtttgatttttacctctgtagccatgctggaatacagggtaccagccgtccttcacactatcatgttttatgggatgataactgctttactgcagatgaacttcagctgctgacgtaccagctctgccacacttacgtgcgctgtacacgatctgtttctatacctgcaccagcgtattatgctcacctggtagcgttcagagccagatatcatcttgtggacaaagaacatgacagtgctgaaggaagtcatgtttcaggacagagcaatgggcgagatccacaagctcttgccaaggctgtacagattcaccaagataccttacgcacaatgtactttgcttaaaaagtccaagaatattctctgagaggaagaattgagagatgcatcgacatacagcatatgtttccagtggagtcagttgagtgggaatgcctccagccatacagcagccaacactgtgtggggaccagggtctgatttttatgttaatacaaggaagattgtttacttcatcaaggaacacagcaccattatgcaatatgaaaccagccaactgcttttttgtgcggtctccttaggaagtatcgccattgttttgttttcactttcttgtagtctaacccttttaatgcctttacctcaagttgcttggcagcacaactatctttgcaaaaaaaagtaaagaaaaagtaaatgatggtttaaaaaaaaacacaccttacatgaataatcaaagtgattgttcacaattatgtgtgcaaaaaaattaatgtgcattcgtgtattcttgtggaaggtatctgtatattttaaatatatacatgtatacttcatatgcatatatatctggatctacattgacagtagatatatatgtgtctgtgtattttatagtttattccatcggggagctttcttttcccttctgtcgtcctcccgccaccactttccatttctctccacttccctcaccttcatcgtctacatttttctcctgatgccaccagtgacattcagatgttcgtgtatccggttcatttggatacgaagcatggcaaactagatttttatttttattttgcacaccctactcctgtctcttgtctcatacacaattctaagtcctcaactcttgatattgctttcttaaacaaaattgttatttatatatacatacatacatgtatatgtatatgtatgtatgtatatatgtgtgtgtgtgtgtgtacacacatatatatgaagtttctatgcgagtgtccgccccctcctgttctgaacttacatttgccatttgtgcaatgtgtacataagcagtagcaatcttaaactattctcttaaactattctttttctttagtttgttaaagctgctataaatataaaaccttgtcagaaattgtaactcagaaatttctctaagtgatatgtattctaaagccttctctttctatgggttatacatgaaaatcccttacagctttcataaagggcaaataatttaaatgattgaaactctttagggttgaggcctctgaaattgggtggagagagagaaggggttgctgagggttttttaattttaatttttttttgctagtttacttgctgcctctcataccttaatgtgattttcatatatatatatttttatatatatgtgtgtgtatatataaacatatatgtatgtgttttgaagtacagcttccttttcttttatatttattagactagtgctctcataattagagaactgtattggcaacatcttttatagaaatgtaatcgtgtttattttaagaactgacaacttgttttgctgtcttttagtgcaataagcagttttaaaggaaaggtgtgtctgtttgatttctttaccacagacaggtggaaaaacaggcacctccacaatttttaaaaggcaaagtaatacagccttaatttcagaaggaaagttttgtaatttttcaagtttaaagcatgtcttttaaaaatcctaatgaaaatgaggaagttaaatttcctaaatgagtctgatcttaaatattagagatggagttgaacttcgatttaagaaatgacagtgaaaaggggctcagtcggtggagcatgtgacttttgatcttggggtcatgagttcaagccccacgttgggtgtggagcctacttttaaaaaaaatgacagtgaataacttaagatttagaagacatttaatttgttgaaaatagatcatgtttattgaacaatcatactggttaggtgcccatttttatttactaaaatgaattaggaaaatgtaaaatgatatttttaaaacatttttttgccaatttatcaccagtataactttccttttaaaattagggttatggttggcaaaggaggttaggactatgatcattttaaatgagttaaatcgctgaaatatggaaaaggttttataaaactttattg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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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