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2024-03-29 19:07:18, GGRNA.v2 : RefSeq release 222 (Jan, 2024)

LOCUS       XM_029949238            9381 bp    mRNA    linear   MAM 14-JUL-2019
DEFINITION  PREDICTED: Suricata suricatta argonaute RISC catalytic component 3
            (AGO3), transcript variant X2, mRNA.
ACCESSION   XM_029949238
VERSION     XM_029949238.1
DBLINK      BioProject: PRJNA553468
KEYWORDS    RefSeq.
SOURCE      Suricata suricatta (meerkat)
  ORGANISM  Suricata suricatta
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Carnivora; Feliformia;
            Herpestidae; Suricata.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_043707.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Suricata suricatta Annotation
                                           Release 100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.2
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9381
                     /organism="Suricata suricatta"
                     /mol_type="mRNA"
                     /isolate="VVHF042"
                     /db_xref="taxon:37032"
                     /chromosome="8"
                     /country="South Africa: Kalahari Meerkat Project"
                     /lat_lon="26.98 S 21.83 E"
                     /collection_date="02-Feb-2016"
     gene            1..9381
                     /gene="AGO3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 41 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 5 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:115299755"
     CDS             305..2887
                     /gene="AGO3"
                     /codon_start=1
                     /product="protein argonaute-3 isoform X2"
                     /protein_id="XP_029805098.1"
                     /db_xref="GeneID:115299755"
                     /translation="
MEIGSAGPVGAQPLLMVPRRPGYGTMGKPIKLLANCFQVEIPKIDVYLYEVDIKPDKCPRRVNREVVDSMVQHFKVTIFGDRRPVYDGKRSLYTANPLPVATTGVDLDVTLPGEGGKDRPFKVSIKFVSRVSWHLLHEVLTGRTLPEPLELDKPISTNPVHAVDVVLRHLPSMKYTPVGRSFFSAPEGYDHPLGGGREVWFGFHQSVRPAMWKMMLNIDVSATAFYKAQPVIQFMCEVLDIHNIDEQPRPLTDSHRVKFTKEIKGLKVEVTHCGTMRRKYRVCNVTRRPASHQTFPLQLENGQTVERTVAQYFREKYTLQLKYPHLPCLQVGQEQKHTYLPLEVCNIVAGQRCIKKLTDNQTSTMIKATARSAPDRQEEISRLVRSANYETDPFVQEFQFKVRDEMAHVTGRVLPAPMLQYGGRNRTVATPSHGVWDMRGKQFHTGVEIKMWAIACFATQRQCREEILKGFTDQLRKISKDAGMPIQGQPCFCKYAQGADSVEPMFRHLKNTYSGLQLIIVILPGKTPVYAEVKRVGDTLLGMATQCVQVKNVIKTSPQTLSNLCLKINVKLGGINNILVPHQRPSVFQQPVIFLGADVTHPPAGDGKKPSIAAVVGSMDAHPSRYCATVRVQRPRQEIIQDLASMVRELLIQFYKSTRFKPTRIIFYRDGVSEGQFRQVLYYELLAIREACISLEKDYQPGITYIVVQKRHHTRLFCADRTERVGRSGNIPAGTTVDTDITHPYEFDFYLCSHAGIQGTSRPSHYHVLWDDNCFTADELQLLTYQLCHTYVRCTRSVSIPAPAYYAHLVAFRARYHLVDKEHDSAEGSHVSGQSNGRDPQALAKAVQIHQDTLRTMYFA"
     misc_feature    521..805
                     /gene="AGO3"
                     /note="N-terminal domain of argonaute; Region: ArgoN;
                     pfam16486"
                     /db_xref="CDD:435368"
     misc_feature    833..985
                     /gene="AGO3"
                     /note="Argonaute linker 1 domain; Region: ArgoL1;
                     pfam08699"
                     /db_xref="CDD:430160"
     misc_feature    986..1348
                     /gene="AGO3"
                     /note="PAZ domain, argonaute_like subfamily. Argonaute is
                     part of the RNA-induced silencing complex (RISC), and is
                     an endonuclease that plays a key role in the RNA
                     interference pathway. The PAZ domain has been named after
                     the proteins Piwi,Argonaut, and Zwille; Region:
                     PAZ_argonaute_like; cd02846"
                     /db_xref="CDD:239212"
     misc_feature    order(1142..1144,1187..1189,1229..1231,1241..1243,
                     1295..1297,1316..1318,1322..1324)
                     /gene="AGO3"
                     /note="nucleic acid-binding interface [nucleotide
                     binding]; other site"
                     /db_xref="CDD:239212"
     misc_feature    1481..2758
                     /gene="AGO3"
                     /note="PIWI domain, Argonaute-like subfamily. Argonaute is
                     the central component of the RNA-induced silencing complex
                     (RISC) and related complexes. The PIWI domain is the
                     C-terminal portion of Argonaute and consists of two
                     subdomains, one of which provides the...; Region:
                     Piwi_ago-like; cd04657"
                     /db_xref="CDD:240015"
     misc_feature    order(1892..1894,1904..1906,1940..1951,1958..1960,
                     1982..1984,1991..1993,2003..2005,2015..2017)
                     /gene="AGO3"
                     /note="5' RNA guide strand anchoring site [active]"
                     /db_xref="CDD:240015"
     misc_feature    order(2096..2098,2102..2104,2312..2314,2726..2728)
                     /gene="AGO3"
                     /note="active site"
                     /db_xref="CDD:240015"
ORIGIN      
ggcggcgccgcagtcgtggaggggcagtgggagcgtaagcggctgcgggcgacgcaagttccgcacggggctctcctctcctcgattcacgcttctcgttctctcgcctagtctaatgctgcctccccacggcggctcttcctgacgagagctttcggagtgcggtagctgaggagaagccgtcgccacctcgcctcggggccgaacgagggtgcctgtagcgccgcgtcgcccccttgcgctgcctccttgcccccagtggtgggcgcccttctcgctcgaagcactccccgcagctccatgaatggaaatcggctccgcaggacccgttggggcccagcccctactcatggtgcccagaagacctggctatggcaccatgggcaaacccattaaattgctggctaactgttttcaagttgaaatcccaaagattgatgtctacctctatgaggtagatattaaaccagacaagtgtcctaggagagtaaacagggaggtggttgactcaatggttcagcattttaaagtgactatatttggggatcgtagaccggtttatgatggaaaacgaagcctttacacagccaatccacttcctgtggcaaccactggggtagatttagatgttactttacctggggaaggtggaaaagatcgacctttcaaggtgtcgattaagtttgtctctcgggtgagttggcacctactacatgaagtactgacaggacggaccttgcctgagccgctggaattagacaagccaatcagtactaatcctgtccatgctgttgatgtggtgctacgacatctgccctccatgaaatatacgcctgtggggcgttcctttttctcagctcccgaaggatatgaccaccccctgggagggggcagggaagtatggtttggattccatcaatctgttcgacctgccatgtggaaaatgatgcttaatattgacgtttctgccactgccttctacaaagcacaacctgtaattcaattcatgtgtgaagttcttgacattcataatattgacgagcaaccaagacctctgactgattctcatcgggtaaaattcaccaaagagataaaaggtctgaaggttgaagtgactcattgtggaacaatgaggcggaaataccgtgtttgtaatgtaacaaggaggcctgccagtcatcaaacctttcctttacagttagaaaatggccaaactgtggagagaacagtggcacagtatttcagagaaaagtatactcttcagctgaagtatccacaccttccttgtctgcaagtggggcaggaacagaaacatacctacctgccactagaagtctgtaatatcgtggcagggcaacgatgtatcaagaagctaacggacaatcagacatccactatgatcaaagcaacagcaagatctgcgccagatagacaagaggaaattagcagattggtaagaagtgcaaattatgaaacagatccatttgttcaggagtttcaatttaaagttcgggatgaaatggcccatgtaaccggacgcgtactcccagcacctatgctgcagtatggaggacggaatcggacagttgcaacaccaagccacggagtatgggacatgcgagggaaacagttccacacaggagttgaaataaaaatgtgggctatagcttgtttcgccacacagaggcagtgcagagaagaaatattaaagggtttcacggaccagctgcggaagatttccaaggatgcagggatgcccatccaaggccagccttgcttctgcaaatatgcgcagggggcagacagcgtggagcccatgttccggcatctcaagaacacctactcagggctgcagctcattatcgtcatcctgccagggaagacgccagtgtatgcggaagtaaaacgtgtaggagatacacttttgggtatggcaacacagtgtgtccaagtcaagaatgtaataaaaacatcccctcaaactctctcaaacttgtgcctaaagataaatgttaaactcggagggatcaataatattcttgtacctcatcaaagaccttctgtgttccagcaacccgtgatctttttgggagcagatgtcactcatccaccagctggtgatgggaagaagccttctattgctgctgttgtaggtagtatggatgcccacccaagcagatactgtgccacagtaagagttcagagacctcgacaggagatcatccaggacttggcttccatggttcgagaacttctcatacaattttataagtcaactcggttcaaacctactcgtatcatcttttatcgggatggtgtttcagagggacagtttaggcaggtattatattatgaactactagcaattcgagaagcctgcatcagtttggaaaaagactatcaacctggaataacctacattgtagttcagaagagacatcacactcgattgttttgtgctgataggacagaaagggttggacgaagtggcaatattccggctggaacgacagttgatacggacattacacacccatatgagtttgatttttacctctgtagccatgctggaatacagggtaccagccgtccttcacactatcatgttttatgggatgataactgctttactgcagatgaacttcagctgctgacgtaccagctctgccacacttacgtgcgctgtacacgatctgtttctatacctgcaccagcgtattatgctcacctggtagcgttcagagccagatatcatcttgtggacaaagaacatgacagtgctgaaggaagtcatgtttcaggacagagcaatgggcgagatccacaagctcttgccaaggctgtacagattcaccaagataccttacgcacaatgtactttgcttaaaaagtccaagaatattctctgagaggaagaattgagagatgcatcgacatacagcatatgtttccagtggagtcagttgagtgggaatgcctccagccatacagcagccaacactgtgtggggaccagggtctgatttttatgttaatacaaggaagattgtttacttcatcaaggaacacagcaccattatgcaatatgaaaccagccaactgcttttttgtgcggtctccttaggaagtatcgccattgttttgttttcactttcttgtagtctaacccttttaatgcctttacctcaagttgcttggcagcacaactatctttgcaaaaaaaagtaaagaaaaagtaaatgatggtttaaaaaaaaacacaccttacatgaataatcaaagtgattgttcacaattatgtgtgcaaaaaaattaatgtgcattcgtgtattcttgtggaaggtatctgtatattttaaatatatacatgtatacttcatatgcatatatatctggatctacattgacagtagatatatatgtgtctgtgtattttatagtttattccatcggggagctttcttttcccttctgtcgtcctcccgccaccactttccatttctctccacttccctcaccttcatcgtctacatttttctcctgatgccaccagtgacattcagatgttcgtgtatccggttcatttggatacgaagcatggcaaactagatttttatttttattttgcacaccctactcctgtctcttgtctcatacacaattctaagtcctcaactcttgatattgctttcttaaacaaaattgttatttatatatacatacatacatgtatatgtatatgtatgtatgtatatatgtgtgtgtgtgtgtgtacacacatatatatgaagtttctatgcgagtgtccgccccctcctgttctgaacttacatttgccatttgtgcaatgtgtacataagcagtagcaatcttaaactattctcttaaactattctttttctttagtttgttaaagctgctataaatataaaaccttgtcagaaattgtaactcagaaatttctctaagtgatatgtattctaaagccttctctttctatgggttatacatgaaaatcccttacagctttcataaagggcaaataatttaaatgattgaaactctttagggttgaggcctctgaaattgggtggagagagagaaggggttgctgagggttttttaattttaatttttttttgctagtttacttgctgcctctcataccttaatgtgattttcatatatatatatttttatatatatgtgtgtgtatatataaacatatatgtatgtgttttgaagtacagcttccttttcttttatatttattagactagtgctctcataattagagaactgtattggcaacatcttttatagaaatgtaatcgtgtttattttaagaactgacaacttgttttgctgtcttttagtgcaataagcagttttaaaggaaaggtgtgtctgtttgatttctttaccacagacaggtggaaaaacaggcacctccacaatttttaaaaggcaaagtaatacagccttaatttcagaaggaaagttttgtaatttttcaagtttaaagcatgtcttttaaaaatcctaatgaaaatgaggaagttaaatttcctaaatgagtctgatcttaaatattagagatggagttgaacttcgatttaagaaatgacagtgaaaaggggctcagtcggtggagcatgtgacttttgatcttggggtcatgagttcaagccccacgttgggtgtggagcctacttttaaaaaaaatgacagtgaataacttaagatttagaagacatttaatttgttgaaaatagatcatgtttattgaacaatcatactggttaggtgcccatttttatttactaaaatgaattaggaaaatgtaaaatgatatttttaaaacatttttttgccaatttatcaccagtataactttccttttaaaattagggttatggttggcaaaggaggttaggactatgatcattttaaatgagttaaatcgctgaaatatggaaaaggttttataaaactttattgatttcattttaaggtattagaaagtattatagagctgacaaaatcaagttcatcagtaaccttggattcaggggagctttgcactttgtaactcatgaaaattgcattttaattttttatttttatttttttgcactggttcagagtatagatactacagagtgtttccagtgggcattgttaacccttttagaattccatctgcacatggtatcgaatggattagctctttagtttctctcttacctgtaatccactcttattgccaatttactgtattttgagcctaaaatctgagcccatgtcctccaacaggtatggaatcttttgttcctctgccagaaaactaagaaagtactgtattttgtatgtttattattattgaagtgtctgaaatgcaatttacaacactgtttcaaagctctttacatgaagtaatttttgtatagtatatacattttttctcccaaccctgcccctctcctccaaaaatgtcctataaagcatgtatttttttttaaacattgaaatttcactgagtatagtcaggaacatgaacaggagaagaaagtagtttatcctagatggtcagaacttgattgttacatgcttgctcagtatgagtaaaacaccttccaatgggagcatatgggaaaccattggcccagggaagaactgtagataccattttcctatttagtgcttcacctcgttttcagttagtcttccatgtgttagaatgaaacccataatttaaatctgtttggaaggacttttactaaaggaaaaaaaaaactttttctaatataaagctttacctttgaagtgagttcttttttagggtttctttcttacggtttcaacattgctagtttaaggttggttaacttgaaagaatatgtatagtatatttctattttgcttactaacaaattggtatatcaaaatgaaagggaactttgtgcttagaattttaagataaaagactaagtggcaaatactttttgaaatttgttttaatgattattgcacttctggtgtagaattcctgatttttttaattaaaaaaaaaaagattgttttgaatttaaaggtcatgaaactcaacaatgacctttctgttcctgcctttgctcactaaactacataatgaatgctaaattttggtctactgtgttctatgatgcataagagttactttaaaatgtccgtcccaaccactggtataattgattttcatgtgaagaagagttggtagtttaatgtatattctggatgggaaatgtgtctgggtaaagtgctgatacatgttattacagtatcaagttactggcattgaggaccttacatttataatactgtagctgctatatttatttaattaagtagactctgacatttactgcactaaacaataaggagatgagcaggattggaagctagtgttaagacacacacccccttttttcctaaataagattaagaacatgaaataacaagataacaaagggtgctaccattttagtttcaatttaatatcaggatactctttgttttagaaaagtagattattactttagctgttttgcaaaagggtacctcaacctcctcagtactggtttttggcatattttcacagaagtacagcttcccctttattttttcttaatattttaccttttaacaagtttctcagaaaaacaaagttcttatatggaaatctacctgtttgtaatccgttaatttatttctctttctagaagagtctagaagggattctagtaggaatgtattgggtgttttggaaggcactagataaggattcatctctaccttctagcatagggacttgtagccttctgaagacctatactatttttccaaactaggttctttgatgacccaccactgcctaatgtttacttgtatattctgtaatggattttagcatgacatactgcatggcaggcttaaaggaaataaattctgagttgccgttcagtagaaaaggctggcagaggatttcagtgtttaagtgccagtaatagatctgaagtaatttagatggattatataggtgaggaattagagactgatggtaaaggaatttgccaagggtggtgatttttatgaaatccatgaatctagctacttggattcagcttagaatattttgtagtcttggctgtttcaaatttgatagaaatattttgccaaaaagcttaactgataactctgtatatttttattcaggatcattaaacctgagttaaatatttggttaaatactctcttagatgttctcctattgagtatttttaaaacacaggttgttcctatcagtaacttgatacttaaattaccttttaggagttattagtaaagctgcaaaagacatcattggcttggcatctttattttgccttttttatccatacaaagttttaatcctttgcattcttcttgagaattcctggatgtcttaaagcttcaataataatagttgggaggctttatatgtgtatcaagtgaggcctccctgagtggtggtataaccctgactctagagtctgtctttattttcctattcccctcccatttgatcatataaagcactttcatgattctgtagagtcaaaaaataagccaagaattgatgtgtaaaatcagaaagtaagggttttctccaaaaactctttttaagaaattcctgcttaaactaagaacattattggtcagtgaccattagaaatgataccatgattagtaaaatgtaagctgactcccaggaggaaaaaaattaatctctctctccttccccctccccaccatatatatctcaaagggaaaaaatatttttttactttttcctacttttaaaaatggtactggatcagtttataattttccatgtcagtcaaaataatttttttaaactaacatataacggtcaaggcttgtgctaatgttacctactgttagttgaattttatttttctttacccagcaaagagactactctagatttttacattgttcattaaacctcaagaatctaatgctcttaaagtatggaagctaaagattttaatttgaattaaagatagataataaatttaatatagaaggttgagatttaccaataggaaactctgttgaactatcaggtaacaaagagtgcaacaaaattaagatcctgttaattaatctgtccagccattggtctcccttcctttttgaaatcaatgtctgaagcaaccaaaacccaatgttgtatctatgttagtgtctcagtaaagcaaagatgttcttcagggtagatgctgagttaaattgttaaatccttttttaaagcaaggcggttattagaaagtgccttttcagaagatggtgctgtagatttttatttttcaaatagcacgagactaaaaatttaaaaggtaaattattttagaactccaagagtgtggcagtttcataaataatgttatttgttgtcctgaatctggtccaaggaaccaagtaaaggtttcattcagtaaattatctaggtaaatgctcaccaaatgtattttgcaagttcgaaaaataaatttttaatgaattaaccctttcagttcttagctgtgttgaaggtaatctataagacacataaaacagcaaatctactaaactttttaacaagagtataggtatagtaacaagtgccctaagggaaaggtaactcgccagggagttatatgtcatagctacttttttgttttttgtttttttccagtatagattgacccttctgtaaatatctattggcatccttttctaattaatatttattaaagaagactgcttgtatatacaaggagagccaagtcatcatgtaaattagttttaacagaaaacataaagtgactataactctatctttggggatattttcttttttaggcactaagaaacatatgactccctctttttttctaccatgggggcaactatgaaatatgatgacagtgcatctaaaagggtatgatcagttaattagaaatacaacatgcaaaattggtctttggaggaaataagcaaaatgaaccattcatacttactagaaatgtagtaatctaccagaaagcagttttcccctaggctgtttactctcctagtagacaacagtaaatgatcatctaaccagatcttgtgaatttggtgagcatttctccagaaaagaattgacaaaagaacaaaaaacaccacacctcagtaaccttgtatgctgcattatgtaataatgatagattatatcgattgtttggagtgtactgtgtctgtttgcaaatatacatgcacattaaacattttcatttttataatgtcttcatagcaa
//

by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]