2024-04-19 15:54:11, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_027937513 3135 bp mRNA linear ROD 21-MAY-2020 DEFINITION PREDICTED: Marmota flaviventris protein argonaute-3 (LOC114094375), mRNA. ACCESSION XM_027937513 VERSION XM_027937513.1 DBLINK BioProject: PRJNA516936 KEYWORDS RefSeq. SOURCE Marmota flaviventris (yellow-bellied marmot) ORGANISM Marmota flaviventris Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciuromorpha; Sciuridae; Xerinae; Marmotini; Marmota. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_023144676.1) annotated using gene prediction method: Gnomon, supported by mRNA evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Marmota flaviventris Annotation Release 101 Annotation Version :: 101 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3135 /organism="Marmota flaviventris" /mol_type="mRNA" /isolate="SJ_83" /db_xref="taxon:93162" /chromosome="Unknown" /sex="female" /tissue_type="blood" /dev_stage="adult" gene 1..3135 /gene="LOC114094375" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 mRNAs, 34 Proteins, and 99% coverage of the annotated genomic feature by RNAseq alignments" /db_xref="GeneID:114094375" CDS 272..2854 /gene="LOC114094375" /codon_start=1 /product="protein argonaute-3" /protein_id="XP_027793314.1" /db_xref="GeneID:114094375" /translation="
MEIGSAGPVGAQPLLMVPRRPGYGTMGKPIKLLANCFQVEIPKIDVYLYEVDIKPDKCPRRVNREVVDSMVQHFKVTIFGDRRPVYDGKRSLYTANPLPVATTGVDLDVTLPGEGGKDRPFKVSIKFVSRVSWHLLHEVLTGRTLPEPLELDKPISTNPVHAVDVVLRHLPSMKYTPVGRSFFSAPEGYDHPLGGGREVWFGFHQSVRPAMWKMMLNIDVSATAFYKAQPVIQFMCEVLDIHNIDEQPRPLTDSHRVKFTKEIKGLKVEVTHCGTMRRKYRVCNVTRRPASHQTFPLQLENGQTVERTVAQYFREKYTLQLKYPHLPCLQVGQEQKHTYLPLEVCNIVAGQRCIKKLTDNQTSTMIKATARSAPDRQEEISRLVRSANYETDPFVQEFQFKVRDEMAHVTGRVLPAPMLQYGGRNRTVATPSHGVWDMRGKQFHTGVEIKMWAIACFATQRQCREEILKGFTDQLRKISKDAGMPIQGQPCFCKYAQGADSVEPMFRHLKNTYSGLQLIIVILPGKTPVYAEVKRVGDTLLGMATQCVQVKNVIKTSPQTLSNLCLKINVKLGGINNILVPHQRPSVFQQPVIFLGADVTHPPAGDGKKPSIAAVVGSMDAHPSRYCATVRVQRPRQEIIQDLASMVRELLIQFYKSTRFKPTRIIFYRDGVSEGQFRQVLYYELLAIREACISLEKDYQPGITYIVVQKRHHTRLFCADRTERVGRSGNIPAGTTVDTDITHPYEFDFYLCSHAGIQGTSRPSHYHVLWDDNCFTADELQLLTYQLCHTYVRCTRSVSIPAPAYYAHLVAFRARYHLVDKEHDSAEGSHVSGQSNGRDPQALAKAVQIHQDTLRTMYFA"
misc_feature 488..772 /gene="LOC114094375" /note="N-terminal domain of argonaute; Region: ArgoN; pfam16486" /db_xref="CDD:435368" misc_feature 800..952 /gene="LOC114094375" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:430160" misc_feature 953..1315 /gene="LOC114094375" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212" misc_feature order(1109..1111,1154..1156,1196..1198,1208..1210, 1262..1264,1283..1285,1289..1291) /gene="LOC114094375" /note="nucleic acid-binding interface [nucleotide binding]; other site" /db_xref="CDD:239212" misc_feature 1448..2725 /gene="LOC114094375" /note="PIWI domain, Argonaute-like subfamily. Argonaute is the central component of the RNA-induced silencing complex (RISC) and related complexes. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the...; Region: Piwi_ago-like; cd04657" /db_xref="CDD:240015" misc_feature order(1859..1861,1871..1873,1907..1918,1925..1927, 1949..1951,1958..1960,1970..1972,1982..1984) /gene="LOC114094375" /note="5' RNA guide strand anchoring site [active]" /db_xref="CDD:240015" misc_feature order(2063..2065,2069..2071,2279..2281,2693..2695) /gene="LOC114094375" /note="active site" /db_xref="CDD:240015" ORIGIN
gcgtctggggccgccggcgacgcaagttccggacggggctcccttctcctcgcctcacgcctctccttcctctcgcctgatcccgggctgtctcccgaccgcggcccttccggccgagcgccttctgagtgcggtagcggaggggaagccgtcgtcgtccccagcctcggggccgagtgaggtgcctgtcgcgccgcgtcgccccctcgccgactcctcgcccctgtggcgggcgccgttttcgccccaagcactccccccagctccatgaatggaaatcggctccgcaggacctgttggggcccagcccctactcatggtgcccagaagacctggctatggcaccatgggcaaacccattaaactgctggctaactgttttcaagttgagattccaaagattgatgtctacctctatgaggtagatattaaaccagacaaatgtcctaggagagtgaacagggaagtagttgactcaatggttcagcattttaaagtaactatatttggagaccgtagaccagtttatgatggaaaaagaagcctttacacagccaatccacttcctgtggcaactactggggtggatttagatgttactttacctggggaaggtggaaaagatcgacctttcaaggtgtcaatcaaatttgtctctcgcgtgagttggcacctactccatgaagtactgacaggacggaccttgcctgagccactggaattagacaagccaatcagcactaaccctgttcatgccgttgatgtggtgctacgacatctgccctccatgaaatatacgcctgtggggcgttcctttttctcagctccagaaggatatgaccaccctctgggagggggcagggaagtatggtttggattccatcaatctgttcgacctgccatgtggaaaatgatgcttaatatcgatgtttctgccactgccttctacaaagcacaacctgtaattcagttcatgtgtgaagttcttgatattcacaatattgatgaacaaccaagacctctgactgattctcaccgggtaaaattcaccaaagagataaaaggtctgaaggttgaagtgactcattgtggaacaatgagacggaaataccgtgtttgtaatgtaacaagaaggcctgccagtcatcaaacctttcccttacagctagaaaatggccaaactgtggagagaacagtagctcagtatttcagagaaaagtacactcttcagttgaagtacccacaccttccctgtctgcaagtggggcaggagcagaaacatacctacctgccgctggaagtctgtaatattgtggcaggacaacgatgtattaagaaactaacagacaatcagacttcaactatgatcaaggcaacagcaagatctgcaccagatagacaagaggaaattagcagattggtaagaagtgcaaattatgaaacagatccatttgttcaggagtttcaatttaaagttcgagatgaaatggcccatgtaaccggacgtgtacttccagcacctatgctccagtatggaggacggaatcggacagtggcaacaccaagccacggagtatgggatatgcgaggaaaacagttccacacaggagttgaaatcaaaatgtgggctatagcttgttttgccacacagaggcagtgcagagaagaaattttaaagggtttcacagaccaactgcgtaagatttccaaggatgcagggatgcccatccagggccagccatgcttctgcaaatacgcacagggcgcagacagcgtagagcccatgttccggcacctcaagaatacatactctgggttacagctcattattgtcatcctgccaggaaagacaccagtgtatgcggaggtgaaacgtgtaggagatacacttttgggtatggctacacagtgtgttcaagtgaagaatgtaataaaaacatctcctcaaactctctcaaatttgtgcctaaagattaatgttaaactcggcgggataaataatattcttgtacctcatcaaagaccttctgtgttccagcaaccagtgatctttttgggagcagatgtcactcatccacctgctggtgatgggaaaaaaccttctattgctgctgttgtaggtagtatggatgcccacccaagcagatactgtgccacagtaagagttcagagacccaggcaggagatcatccaggacttggcatccatggtccgagaacttctcattcaattttataagtcaactcggttcaaacctactcgtatcatcttttatcgggatggtgtttcagagggacagtttagacaggtgttatattatgagctactagcaattcgagaagcctgcatcagtttggagaaagactatcaacctggaataacctatatcgtagtacagaagagacatcacactcgactgttttgtgctgataggacagaaagggtcggaagaagtggcaatatcccagctggaacaacagttgatacagacattacacacccgtatgagtttgatttttacctctgtagccatgctggaatacagggtaccagccgtccttcacactaccatgttttatgggatgataactgctttactgcagatgaacttcagctgctaacttaccagctctgccacacttacgtacgctgtacacgatctgtttctatacctgcaccagcgtattatgctcacctggtagcattcagagccagatatcatcttgtggacaaagaacacgacagtgctgaaggaagccacgtttcaggacagagcaatgggcgagatccacaagctcttgccaaggctgtacagattcaccaagataccttacgcacaatgtactttgcttaagtccaaggaagaactgaaagatgcgtcgacacaacgtatgttttgaggtctcactgtgtggcccagactggtttcaaactcagaggctcacgtaatcctcccacctgagccttcccagtagctgggactacaggtatgcaccacacctggctgtttttttatattgaagtttcatgaatatagtcaagaacataggaaagaaaagaaaatagtatatcctaaatgtaaaaacttggtttatgcttgcttaatataaataaaaccatcttcctttgtctgtg
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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