2024-04-24 12:13:27, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_027606003 8137 bp mRNA linear MAM 06-AUG-2020 DEFINITION PREDICTED: Zalophus californianus argonaute RISC component 1 (AGO1), transcript variant X4, mRNA. ACCESSION XM_027606003 VERSION XM_027606003.2 DBLINK BioProject: PRJNA602522 KEYWORDS RefSeq. SOURCE Zalophus californianus (California sea lion) ORGANISM Zalophus californianus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Pinnipedia; Otariidae; Zalophus. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_045598.1) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process On Aug 6, 2020 this sequence version replaced XM_027606003.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Zalophus californianus Annotation Release 101 Annotation Version :: 101 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.5 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..8137 /organism="Zalophus californianus" /mol_type="mRNA" /isolate="mZalCal1" /db_xref="taxon:9704" /chromosome="4" /sex="male" /tissue_type="blood" /country="USA: California" /lat_lon="37.858768 N 122.484010 W" /collection_date="07-Jul-2018" /collected_by="Frances Gulland and Jochen Wolf" gene 1..8137 /gene="AGO1" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 16 mRNAs, 8 ESTs, 6 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 6 samples with support for all annotated introns" /db_xref="GeneID:113929236" CDS 166..2286 /gene="AGO1" /codon_start=1 /product="protein argonaute-1 isoform X4" /protein_id="XP_027461804.1" /db_xref="GeneID:113929236" /translation="
MPHRVGACARGTSSLPVPARYTPVGRSFFSPPEGYYHPLGGGREVWFGFHQSVRPAMWKMMLNIDVSATAFYKAQPVIEFMCEVLDIRNIDEQPKPLTDSQRVRFTKEIKGLKVEVTHCGQMKRKYRVCNVTRRPASHQTFPLQLESGQTVECTVAQYFKQKYNLQLKYPHLPCLQVGQEQKHTYLPLEVCNIVAGQRCIKKLTDNQTSTMIKATARSAPDRQEEISRLMKNASYNLDPYIQEFGIKVKDDMTEVTGRVLPAPILQYGGRNRAIATPNQGVWDMRGKQFYNGIEIKVWAIACFAPQKQCREEVLKNFTDQLRKISKDAGMPIQGQPCFCKYAQGADSVEPMFRHLKNTYSGLQLIIVILPGKTPVYAEVKRVGDTLLGMATQCVQVKNVVKTSPQTLSNLCLKINVKLGGINNILVPHQRSAVFQQPVIFLGADVTHPPAGDGKKPSITAVVGSMDAHPSRYCATVRVQRPRQEIIEDLSYMVRELLIQFYKSTRFKPTRIIFYRDGVPEGQLPQILHYELLAIRDACIKLEKDYQPGITYIVVQKRHHTRLFCADKNERIGKSGNIPAGTTVDTNITHPFEFDFYLCSHAGIQGTSRPSHYYVLWDDNRFTADELQILTYQLCHTYVRCTRSVSIPAPAYYARLVAFRARYHLVDKEHDSGEGSHISGQSNGRDPQALAKAVQVHQDTLRTMYFA"
misc_feature 232..384 /gene="AGO1" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:430160" misc_feature 385..747 /gene="AGO1" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212" misc_feature order(541..543,586..588,628..630,640..642,694..696, 715..717,721..723) /gene="AGO1" /note="nucleic acid-binding interface [nucleotide binding]; other site" /db_xref="CDD:239212" misc_feature 880..2157 /gene="AGO1" /note="PIWI domain, Argonaute-like subfamily. Argonaute is the central component of the RNA-induced silencing complex (RISC) and related complexes. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the...; Region: Piwi_ago-like; cd04657" /db_xref="CDD:240015" misc_feature order(1291..1293,1303..1305,1339..1350,1357..1359, 1381..1383,1390..1392,1402..1404,1414..1416) /gene="AGO1" /note="5' RNA guide strand anchoring site [active]" /db_xref="CDD:240015" misc_feature order(1495..1497,1501..1503,1711..1713,2125..2127) /gene="AGO1" /note="active site" /db_xref="CDD:240015" ORIGIN
gaatcttcaaggtctccatcaagtggctagctattgttagctggcgcatgctgcatgaggccctggtcagtggccagatccctgttcccttggagtctgtgcaagccctggatgtggccatgaggcacctggcatccatgaggccagggctcctccgtgcccaggatgcctcacagggtgggggcctgtgcccgagggaccagttctctgcctgtccctgccaggtacacccctgtgggccgctccttcttctcaccgcctgagggctactaccacccgctggggggtgggcgcgaggtctggttcggctttcaccagtctgtgcgccctgccatgtggaagatgatgctcaacattgatgtctcagccactgccttctacaaggcacagccggtgattgagttcatgtgtgaggtgctggacatcaggaacatagatgagcagcccaagcccctcacagactctcagcgtgtgcgtttcaccaaggagatcaaaggcctaaaggtggaagtgacccactgtggacagatgaagaggaaataccgtgtgtgtaatgttacccgccgccctgccagccatcagacgtttcccttgcagctggagagtggacaaactgtggagtgcacagtggcacagtatttcaagcagaaatataaccttcagctcaagtatccccatctgccctgcctgcaagttggccaggaacaaaagcatacctacctgcccttagaggtctgtaacattgtggctgggcagcgctgcattaagaagttgaccgacaaccagacttcgaccatgataaaggctacagctaggtcggccccagacagacaggaggagattagccgcctgatgaagaatgccagctataatctagatccctacatccaggaatttgggatcaaagtgaaggatgacatgacggaggtgacggggcgagtgctgccggcccccatcctgcagtacggcggccggaaccgggccattgccacacctaatcagggtgtctgggacatgcgggggaaacaattctacaatgggattgagatcaaagtctgggccatcgcctgcttcgcaccccaaaaacagtgtcgagaagaggtgctcaagaacttcacagaccagctgcggaagatttccaaggatgcagggatgcccatccagggccagccttgcttctgcaaatatgcgcagggggcagacagcgtggagcccatgttccggcatctcaagaacacctactcagggctgcagctcattatcgtcatcctgccagggaagacgccagtgtatgctgaagtgaaacgtgttggagatacactcttgggaatggctacacagtgtgtgcaagtgaagaatgtggtcaagacctcgcctcagactctgtccaatctctgcctgaagatcaatgtcaaacttggtggcattaacaacatcctggtcccacaccagcgctctgccgtctttcaacagccagtgatattcctgggagcagatgttacacaccccccagcaggggatgggaaaaaaccttctatcacagcagtagtaggcagtatggatgcccaccccagccgttactgtgctactgtgcgggtgcagcgaccccggcaggagatcattgaagacttatcctacatggtgcgtgagctgctcatccagttctacaagtctacccgcttcaagcctacccgcatcatcttctaccgagatggggttcctgaaggccagctcccccagatcctccattatgagctgttggccattcgtgatgcctgcatcaaactggaaaaggactaccagcctgggatcacttacattgtggtgcagaaacgtcatcatacccgccttttttgtgctgacaagaatgagcgaattgggaagagtggtaacatcccagctgggacaactgtggacaccaacataacccacccatttgagttcgacttctatctgtgcagccatgcaggcatccagggcaccagccgaccatcccattactatgtcctttgggatgacaaccgtttcacagcggatgagctccagatcttgacgtaccagctgtgccacacttatgtacgatgcacacgctccgtctctatcccagcacctgcctactatgcccgcctggtggctttccgggcacgataccacctagtggacaaggagcatgacagtggagaggggagccacatatcggggcagagcaatgggcgggacccccaggccctggccaaagccgtgcaggttcaccaggatactctgcgcaccatgtacttcgcttgaaggcagaacgctgttacctcactggatagaagaaagctttccaagccccaagagctgtgccgcccaaatccagaggaagcaaggaggaggagggagggtagggaggagttcagaaggccttgtttccttctacaaagggggcaaaagggtggggaacagggccagtaagccagaccaccagccagaagtctctgatgtccacctcatgacccccacccctcaccccatcttgtcacatctggccctgaccccactggaccaagaggggcagcactggtgcccaccatacacacaggtgtctcatgtgacttgcagtgctaaagactcatgcctgacagcttggtaaggtcggctctgcagccccgcggacaaaagctggtaggtttgggtttgataatttagatgggagagtgaggggcttgagaaagtgggtgggaggagggaaggattttttaggagccttaatcagaaaaggtctagatttgtttaagaggaaaaacgaaaccagacccagatcaatattttagaatactagatgttttaatgggttgaaaatccagtttgtaggaagatttttaatgctaatgattttggttgctcctcccccagctgccacccccctttcccttattcctttctctccaccttttctaccccaccttacacctcctccctgacagacatccagcccctagtaagacttaaggcactatggcacttagctctgaagtgacacgaccctgtcttccttccgcctactggtgggtaaccagtgccttccctgtaacggtaatgctgcagaactgcaaccttttgtacctttctttggggggatggggtgggggtgggagaggaggtaggtggggaagaaatacccctaacccaacaagcctccagccagagcgccagctattttgcattcaaaggaattgacttccatattcattgagcttttaaaaagatcacaacctcaagatggttaaagtccattgacatttgcactttcagacatgatgtcttggagctgctgagaggactggcccctggcctctccacttaacgcctcctcttctccctgtccccccagctccccacctgcctgggtctggagttactttcatagcatttctcattcttggcttcttttttcccctgatggtcaagtcgcttatgtttcaatatttcttaactggggtgtcttataacaaatgatctgaagtctaaaatcagaaaaaggagcaaaagctaaatgttatttttataccataacttgagtctattgccaaaatctggaaatccctcccatgcccaataagtttacatcccagaaacattgagccatcagaaggaactatgtaccggacttgttctttggcctggctaggtagagggtggttatctcctcatggtggagctcaggctccatccttcccctgtgcagatactatctttttcttgctataggctccctcctctgcactgccctgcactctttcctgcaagtgcatcttccctttctctggactgtctgacactttggctcatcccagattccagtgtgtcctgtggacaggctgggggattttgctgctccctattgcttctgtttacacaaatgaatttttcccagtttcccactagggcatgtgagtgggtggcatgggcctttgttttgttttgttttttgtctccctagataaagatggggtttggctgtcttgcagaactggaaaagtagggggtttctagcttggtgcctgctggccttgaggcaaggccccctctttccttaactgttcatttttttcctctcccactgcttgggatgaggagttgcagcttcagtgtggatgttcctctttttgaggagcctgggcttgggtttgccccaatctggtgatgaagccatgacactttagacctagctcaggcttggaggccagtctgaatcctggcctgtgtgcttagagctaccatttcccctccccagcagcccttatacagacccagatttgctatgcaaaacagtctatcccaggttttgttctggttggctactttgttcagcgacttcacataacgtagcacaaacattgattatggagaaggcatcaggactgttgagtaactcctcctctacttctttcctactggctatagcatgggatgccccatgggtacagcccagctgaagaacggaatggagggctctgggaggaggcagctcactggagagcctacattccttacacaagtgcctaaagagagtgatgccaacactccatctgccctgtccatcgccttcatatactgtctacttcgtgttcagtcaccctttggggaggggagctctcttgggacaatgggctctgcatgttctcttcttgggtgcatttaggggctgggatcagggcactgttcctggagggtccagtcattcaccagcatttgcaaatatccatagggagctggtggtagccacctactctcagcaacaagtttatgttctctcctttttctctctttgcctcactgtctccatttgggttttgagctggggcctgaaatgcattttttagctctttggcattgcacatgccattcaagaaataaaaagcaagagaagcggtttgggcaatggcaagaaaatgacttcttgctctgattttttttttttttaaatctttgagacttgaaaaatacccttgaccttgaggattattctttgaaaggtggtgcatgcagattgagaagtggtattagcaacaagctttggctttcttggatttgatttaagtggtgcttcttacttgtgctctgaggaagtgttggggggaccccagcctcatcctcttggtcaggtctcttgctccctttgttctactctcttgcctctgttttctatttatctctttccctggctccttttccttttttctttcactaagcttgtttgctggcctgcctgcctatgtgatgatgaattctctgcatggctttgataatcccactgttagctagcaaggtcaggcttagctccttggctgcagaagaccaagacttagttccccaagcctggtgatgttctctctgggctggactgccatcagcgttacacaaggacagagcagcagggctgcctaccttgcatgaaatcaggagggcttctgacaacttccacacctgtccactccttggagttggtttttctcattgctttttctagatctggttccatttctctacctgcctcccttttctcaggctgtcctagggttgagctacttggtttccagggttggagggttaggggatggacttgggggaagaagagaatgatgggaagagaatggagagaatttggataaaagatgggaaagagcactgttcattgatcatttttccagtccagtctgacccactgggggttgaggtgctactgttgaactcgagataagcctggggctattgttgatgggaacttaggtttagaataatgttgacaaggaagatacctagaagcatgaaacctcccttaaaagctcctggttcccacctactagatagctccactgcagcctcctcttctgctaagcaacaatgttcttggatggttgtttttttgttttgttttgttttgttttggggggggtcccagaattcaatagatgaggctagcactcaggatgggcagccaaggggacattttgaattcttagctggcccatggggtatctatctgcaaggctggtgggcagtgttttagacccggcatcatgtttaacaaagaagaatggaagttccttccccttcagggtggaaagttatctcaaactagccaaaatgcagttttggaaactacattgggtgaagttattttttatatttactgggcctaggccaatccaggatggtagctgggatgccttccttcttaaagtctgatcatggcagggatatgcagggcactctttcctatttagccttctaagcagattggggagaagggattctgtggttttctctttcccccccttttattaggacttgccttctccctaggcagggagagaggctaggttggtgctctccccttactctattcctactgacttagaacctctggctgctgtttgggagcctaagaatgggagtggagggaatgggctcaaaacaaaacagaataaggtggggaaggcagatttccttctttaaaaaggaaaataggaaaccctccaaggattgtgcaagtaaagacaatgtgtcaaatgcactgagtcccctggtgtagtagcaataaggaaaaatgaaatgactttcctgtgcacacagtccaacctgattggtgtgtgatgttgcacttagcagccatctggtgggcatgtgtgactactctgggtttcactttagtttctaaactttttatccctctcaagtccagcatggatggggaaatgtccctggagccccacagctgtgtacttgtttgcatttgtttccctttgagacttgtgtttgtgtcctgctttgagctgtaccttgtccagtccattgtaaaattatcccagcagctgtaatgtacagttccttctaaagcaagcaacagcagcagcacaattctgtgttttataaagacaacagtggcttctatttctaaagtgcggtctctctctcttttcccccactcccattaacaaagaaaactgttgggattgattatatctctgatatattttaggttagagtattagattgttataacagcagaactatcacctctataggaaagaaaacaccagagtgttgaaactgcagatttgtgtaaccatacttcacaaggcctccatttattcttcattcaacaaaccatacaaagcactgtgtccagcagtattgttgggggagaaaggaagcacaattcagaaaggaggaaaactgtgtctctctccttaaggagcttaaagtttggtgggggatatgagtggccaaacggttccctagccaaatgatgagggactgaaacaaggctataaagctatagcagtgaagataggaaaggaagatttttgagagacactcagaagatagtactcaatagatgatggaagggagagagaggagtagaggctaataatgctcaggcttctacttgagccataagtatattgggacattcttctaaccaagactgggggagaagggagacgatagaagaaaggtggtgaattttgtgaagatagccttgtatagactgagtgtggaggttcccatgaggcaacaagtttaaggtttccagtaaacacttatattttggtgctcagggaagactacaaaactacagttgtagataatgggattcatactcctatagatggtaggtaaagccgtaggaatgaacaagatggcttagaaaaagagtagagcaagaaaacatagagtccaactccaggaaacacaatttaaaggatgagaggaagctgaacttaagaagactgttaaatcactagtagataccttgtatattttttacttaatgaagtgggagaaaagtcaggagaatggaataggattcaagaagggtgtaattaacaacatgaactgctgccttgaggaggtatttttttctattcagtttaccatcctccaccccatcttctttggcatcttgtaactatatggtcattctccagtatttcttgaaaatgagcattgaaaaaacccaatttaaataaggctaagactaggatttccaagttgttcaccacaaccaccacctccacctccagcttcctcctgtcctcaggagacacttgtaaaagaataaaataaacaaacctaattttgttcctaa
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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