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2024-03-29 08:46:30, GGRNA.v2 : RefSeq release 222 (Jan, 2024)

LOCUS       XM_026150165            1857 bp    mRNA    linear   VRT 04-SEP-2018
DEFINITION  PREDICTED: Astatotilapia calliptera vimentin (vim), mRNA.
ACCESSION   XM_026150165
VERSION     XM_026150165.1
DBLINK      BioProject: PRJNA488811
KEYWORDS    RefSeq.
SOURCE      Astatotilapia calliptera (eastern happy)
  ORGANISM  Astatotilapia calliptera
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Actinopterygii; Neopterygii; Teleostei; Neoteleostei;
            Acanthomorphata; Ovalentaria; Cichlomorphae; Cichliformes;
            Cichlidae; African cichlids; Pseudocrenilabrinae; Haplochromini;
            Astatotilapia.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_039319.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Astatotilapia calliptera Annotation
                                           Release 100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.1
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1857
                     /organism="Astatotilapia calliptera"
                     /mol_type="mRNA"
                     /db_xref="taxon:8154"
                     /chromosome="18"
     gene            1..1857
                     /gene="vim"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 105 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 13 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:113010898"
     CDS             100..1467
                     /gene="vim"
                     /codon_start=1
                     /product="vimentin"
                     /protein_id="XP_026005950.1"
                     /db_xref="GeneID:113010898"
                     /translation="
MAYRSGPHSSYRKMFGGEKTAVRSSYSSRQFSIPVRSSRVSFGLSSTPTIYASKTQRLRSSAAMPRLASENLDFSLSDAINTEFITNRTNEKAQMQSLNDRFANYIEKVRFLEQQNKILLAELEQLRGKGTSRVGDLYEDEMRELRRQVDQLTNEKARVEVHRDNLADDIDRLREKLQDEISQREESEANMQGFRQDVDNAALARLDLERKVESLQEEINFLKKLHDEEMLELQNQIQQQQHVQVDMDIAKPDLTAALRDVRLQYENLASKNIQESEEWYKSKFADLTEAAARNNEALRVAKQESNDYRRQVQALTCEVDALKGTNESLERQMREVEENFSLETSGYQDTISRLEEDIHNMKDEMARHLREYQDLLNVKMALDIEIATYRKLLEGEESRISTPLPNFSSLNLRETMVESKPLIETTTTKKVLIKTIETRDGQVINESTQNHDDMD"
     misc_feature    121..366
                     /gene="vim"
                     /note="Intermediate filament head (DNA binding) region;
                     Region: Filament_head; pfam04732"
                     /db_xref="CDD:428095"
     misc_feature    367..1296
                     /gene="vim"
                     /note="Intermediate filament protein; Region: Filament;
                     pfam00038"
                     /db_xref="CDD:425436"
ORIGIN      
ttaggacacgccttcccaggcgctcttcgcagatgctgatagaaacaagatatattccagatcggcgacagtgctctagtacttaaatacacaaacaagatggcctatagatcaggtccacattcctcttaccgaaagatgttcggcggggagaaaaccgccgtaaggtccagctactcgagccgccagttttcgatcccggtgcgctcatcccgggtttccttcgggctctcctccaccccgaccatatacgcgtcgaagacccagaggctccggagcagtgcagccatgccccggctggcatccgagaacttggacttctccttgtctgacgccataaacaccgaattcatcacgaaccgcaccaacgagaaggcgcagatgcagtccctcaatgaccgcttcgccaactacatcgagaaggttcgcttcttggagcagcaaaataagatcttgctggcggagctggagcagctgcggggcaaagggacgtcccgggtcggagatctttacgaggacgagatgagggagctgagacgccaggtggaccagctcaccaacgaaaaggcccgcgtggaagttcaccgggataacctggcggacgacatcgacaggctgagagagaagttgcaggatgaaatttcccagcgggaggagtctgaggcaaacatgcagggctttagacaggatgtagacaacgctgccctcgccagactggacctggagcggaaagtggagtcactccaagaggaaatcaacttcctcaagaagctgcatgatgaggaaatgttggagctgcagaatcagatccagcagcagcagcatgtgcaggtggacatggatatagctaagcctgacctgacagcggctctgagggacgtccgtctgcagtatgagaacctggcctccaaaaacatccaggaatcagaggaatggtacaaatccaagtttgctgacctcactgaagctgcagccaggaataatgaagctctgagagtggccaaacaggagtccaatgattacagacgccaagttcaggcacttacttgtgaagtggatgccctgaaaggaactaatgagtccttggagcgccagatgagggaggtggaggagaacttctccttggagacgagtgggtaccaggacaccatcagccgtcttgaggaggacattcacaacatgaaggatgagatggctcgtcacctccgcgagtaccaggacttgctaaatgtcaagatggctctggacattgagattgccacctatagaaagctgctggaaggagaggagagcagaatctccacccccttgccaaacttctcatcgcttaacctgagagaaacaatggttgaatccaaaccacttatcgaaaccacaacaaccaagaaagttctcatcaagaccattgagaccagggatggtcaggtgatcaacgagtcgacccagaaccacgatgacatggactaataatgtccttgtctttaccaaaccaccaacaaaaagcaataagaagaaacacatttcactcgggctacaagcaagcaaacaaaccagcaacacacaaaaagcaaacagcttcgagaagtgcctttgtatgtggtgatccagtaagcctgttagttgacacagactgtattttgcttccttggccgcagcaagtattttgtcacagttgtttagacacaataatgaagtcagcacaacacagcagttctcactgaggcctacaaaaatctatctttgtaaccaaagtagtatttttgatcaatatagcatgcacttaccagaaaaactgtatgctaaagatgtcacaattgcctgtatgcagcaataaaccatgaagactgttactcgcta
//

by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]