2024-03-29 08:46:30, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_026150165 1857 bp mRNA linear VRT 04-SEP-2018 DEFINITION PREDICTED: Astatotilapia calliptera vimentin (vim), mRNA. ACCESSION XM_026150165 VERSION XM_026150165.1 DBLINK BioProject: PRJNA488811 KEYWORDS RefSeq. SOURCE Astatotilapia calliptera (eastern happy) ORGANISM Astatotilapia calliptera Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Cichlomorphae; Cichliformes; Cichlidae; African cichlids; Pseudocrenilabrinae; Haplochromini; Astatotilapia. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_039319.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Astatotilapia calliptera Annotation Release 100 Annotation Version :: 100 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.1 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..1857 /organism="Astatotilapia calliptera" /mol_type="mRNA" /db_xref="taxon:8154" /chromosome="18" gene 1..1857 /gene="vim" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 105 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 13 samples with support for all annotated introns" /db_xref="GeneID:113010898" CDS 100..1467 /gene="vim" /codon_start=1 /product="vimentin" /protein_id="XP_026005950.1" /db_xref="GeneID:113010898" /translation="
MAYRSGPHSSYRKMFGGEKTAVRSSYSSRQFSIPVRSSRVSFGLSSTPTIYASKTQRLRSSAAMPRLASENLDFSLSDAINTEFITNRTNEKAQMQSLNDRFANYIEKVRFLEQQNKILLAELEQLRGKGTSRVGDLYEDEMRELRRQVDQLTNEKARVEVHRDNLADDIDRLREKLQDEISQREESEANMQGFRQDVDNAALARLDLERKVESLQEEINFLKKLHDEEMLELQNQIQQQQHVQVDMDIAKPDLTAALRDVRLQYENLASKNIQESEEWYKSKFADLTEAAARNNEALRVAKQESNDYRRQVQALTCEVDALKGTNESLERQMREVEENFSLETSGYQDTISRLEEDIHNMKDEMARHLREYQDLLNVKMALDIEIATYRKLLEGEESRISTPLPNFSSLNLRETMVESKPLIETTTTKKVLIKTIETRDGQVINESTQNHDDMD"
misc_feature 121..366 /gene="vim" /note="Intermediate filament head (DNA binding) region; Region: Filament_head; pfam04732" /db_xref="CDD:428095" misc_feature 367..1296 /gene="vim" /note="Intermediate filament protein; Region: Filament; pfam00038" /db_xref="CDD:425436" ORIGIN
ttaggacacgccttcccaggcgctcttcgcagatgctgatagaaacaagatatattccagatcggcgacagtgctctagtacttaaatacacaaacaagatggcctatagatcaggtccacattcctcttaccgaaagatgttcggcggggagaaaaccgccgtaaggtccagctactcgagccgccagttttcgatcccggtgcgctcatcccgggtttccttcgggctctcctccaccccgaccatatacgcgtcgaagacccagaggctccggagcagtgcagccatgccccggctggcatccgagaacttggacttctccttgtctgacgccataaacaccgaattcatcacgaaccgcaccaacgagaaggcgcagatgcagtccctcaatgaccgcttcgccaactacatcgagaaggttcgcttcttggagcagcaaaataagatcttgctggcggagctggagcagctgcggggcaaagggacgtcccgggtcggagatctttacgaggacgagatgagggagctgagacgccaggtggaccagctcaccaacgaaaaggcccgcgtggaagttcaccgggataacctggcggacgacatcgacaggctgagagagaagttgcaggatgaaatttcccagcgggaggagtctgaggcaaacatgcagggctttagacaggatgtagacaacgctgccctcgccagactggacctggagcggaaagtggagtcactccaagaggaaatcaacttcctcaagaagctgcatgatgaggaaatgttggagctgcagaatcagatccagcagcagcagcatgtgcaggtggacatggatatagctaagcctgacctgacagcggctctgagggacgtccgtctgcagtatgagaacctggcctccaaaaacatccaggaatcagaggaatggtacaaatccaagtttgctgacctcactgaagctgcagccaggaataatgaagctctgagagtggccaaacaggagtccaatgattacagacgccaagttcaggcacttacttgtgaagtggatgccctgaaaggaactaatgagtccttggagcgccagatgagggaggtggaggagaacttctccttggagacgagtgggtaccaggacaccatcagccgtcttgaggaggacattcacaacatgaaggatgagatggctcgtcacctccgcgagtaccaggacttgctaaatgtcaagatggctctggacattgagattgccacctatagaaagctgctggaaggagaggagagcagaatctccacccccttgccaaacttctcatcgcttaacctgagagaaacaatggttgaatccaaaccacttatcgaaaccacaacaaccaagaaagttctcatcaagaccattgagaccagggatggtcaggtgatcaacgagtcgacccagaaccacgatgacatggactaataatgtccttgtctttaccaaaccaccaacaaaaagcaataagaagaaacacatttcactcgggctacaagcaagcaaacaaaccagcaacacacaaaaagcaaacagcttcgagaagtgcctttgtatgtggtgatccagtaagcctgttagttgacacagactgtattttgcttccttggccgcagcaagtattttgtcacagttgtttagacacaataatgaagtcagcacaacacagcagttctcactgaggcctacaaaaatctatctttgtaaccaaagtagtatttttgatcaatatagcatgcacttaccagaaaaactgtatgctaaagatgtcacaattgcctgtatgcagcaataaaccatgaagactgttactcgcta
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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