LOCUS       XM_026039475            1802 bp    mRNA    linear   VRT 08-AUG-2018
DEFINITION  PREDICTED: Nothoprocta perdicaria vimentin (VIM), mRNA.
ACCESSION   XM_026039475
VERSION     XM_026039475.1
DBLINK      BioProject: PRJNA484763
KEYWORDS    RefSeq.
SOURCE      Nothoprocta perdicaria
  ORGANISM  Nothoprocta perdicaria
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Palaeognathae; Tinamiformes; Tinamidae;
            Nothoprocta.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_020455455.1) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Nothoprocta perdicaria Annotation
                                           Release 100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.1
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1802
                     /organism="Nothoprocta perdicaria"
                     /mol_type="mRNA"
                     /isolate="Ctin4"
                     /specimen_voucher="ROM:ORN:Ctin4"
                     /db_xref="taxon:30464"
                     /chromosome="Unknown"
                     /sex="male"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /collection_date="11-May-2010"
                     /collected_by="Royal Ontario Museum"
     gene            1..1802
                     /gene="VIM"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 213 ESTs, 31 Proteins, and
                     99% coverage of the annotated genomic feature by RNAseq
                     alignments, including 5 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:112947391"
     CDS             69..1454
                     /gene="VIM"
                     /codon_start=1
                     /product="vimentin"
                     /protein_id="XP_025895260.1"
                     /db_xref="GeneID:112947391"
                     /translation="

MSISTKNSSYRRMFGGGGRPSSSSSTRYITSSSRYSLGSALRPSSARYVSASPGGIYATKATSVRVRSSMPPMRLHDAVDFTLADAINTEFKANRTNEKVELQELNDRFANYIDKVRFLEQQNKILLAELEQLKGKGTSRLGDLYEEEMRELRRQVDQLTNDKARVEVERDNLADDIMRLREKLQEEMLQREEAENTLQSFRQDVDNASLARLDLERKVESLQEEIVFLKKLHDEEIRELQAQLQEQHIQIDMDVSKPDLTAALRDVRQQYESVAAKNLQEAEEWYKSKFADLSEAANRNNDALRQAKQEANEYRRQIQSLTCEVDALKGSNESLERQMREMEENFAAEAANYQDTIGRLQDEIQNMKEEMARHLREYQDLLNVKMALDIEIATYRKLLEGEESRINMPIPTFASLNLRETNIESQPMVDTHSKRTLLIKTVETRDGQVINETSQHHDDLE"

     misc_feature    90..356
                     /gene="VIM"
                     /note="Intermediate filament head (DNA binding) region;
                     Region: Filament_head; pfam04732"
                     /db_xref="CDD:428095"
     misc_feature    357..1283
                     /gene="VIM"
                     /note="Intermediate filament protein; Region: Filament;
                     pfam00038"
                     /db_xref="CDD:425436"
ORIGIN      

tccgctcgccgccgcgcagcgcccagctccgctcgcggattacaaagccccgcgccgccgcagcagccatgagcatcagcaccaagaactcctcgtaccgccgcatgttcggcggcggcggccgccccagcagcagcagcagcacccgctacatcacgtcgagcagccgctactcgctgggcagcgccctgcgccccagcagcgcccgctacgtgtccgcctcgccgggcggcatctacgccacgaaggcgacgtcggtgcgggtgcggagcagcatgccgcccatgcggctccacgacgccgtggacttcacgctggccgacgccatcaacacggagttcaaggcgaaccgcaccaacgagaaggtggagctgcaggagctcaacgaccgcttcgccaactacatcgacaaggtgcgcttcctggagcagcagaacaagatcctgctggccgagctggagcagctcaagggcaagggcacgtcccgcctgggcgacctctacgaggaggagatgcgcgagctgcgccggcaggtggaccagctcaccaacgacaaggcgcgcgtggaggtggagcgggacaacctggccgacgacatcatgcggctgcgggagaagttgcaggaggagatgctgcagcgcgaggaggccgagaacacgctgcagtccttccgccaggatgttgacaatgcctccctggcccgtctggatctcgagcgcaaggttgagtccctgcaagaggaaatcgtcttcctgaagaagcttcatgatgaggaaatccgagagctgcaggcccaactccaggaacagcacatccagatcgacatggatgtctctaagcccgaccttactgctgccctgcgcgacgtccgccagcagtatgaaagcgttgctgctaagaatcttcaggaagctgaagaatggtacaagtccaaatttgcagatctctccgaagctgctaataggaacaacgatgccctgcgccaggccaaacaggaggccaatgagtatcgcagacagattcagtctctcacctgcgaagttgatgctcttaaaggaagcaatgaatccctggagcgccagatgcgtgaaatggaggagaattttgctgctgaagctgctaactaccaagacactattggccgtctgcaggatgagatccaaaacatgaaggaagaaatggctcgccacctccgcgagtaccaggacctgctgaatgtaaagatggctcttgatattgagattgccacctacagaaaactgctggagggagaagagagcaggattaacatgcccattccaacttttgcttctctgaacttgagagaaaccaacattgagtctcagccgatggttgacactcactcgaagaggacactcctaattaagaccgtcgaaactagagatggacaggttattaatgaaacttcccagcaccatgatgacttggagtaaaactgaagtgatgacgaataattaatgcaggagaacttcttaccagcaagatttaaaaagtccatgtcttaaaggaagaaacagctttcaagtgcctttctgcagtttttccatgagcgcaagataattatgctaggaaataggtcttagatcttgcaaactgactctccctgaaggattagagtttacaatggagtctagtttacaaatagcaatatcttgtgctgcaatactgtttttaagtatctgaatccaataaaactgctttttccagcacagtatgagcaacctgtcgctacttcaaataaacctttggaaaatggctcttgatgtgttctaatttgttac

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