2024-04-26 17:53:09, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_025853425 1923 bp mRNA linear MAM 21-JUL-2018 DEFINITION PREDICTED: Callorhinus ursinus vimentin (VIM), mRNA. ACCESSION XM_025853425 VERSION XM_025853425.1 DBLINK BioProject: PRJNA481736 KEYWORDS RefSeq. SOURCE Callorhinus ursinus (northern fur seal) ORGANISM Callorhinus ursinus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Pinnipedia; Otariidae; Callorhinus. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_020313057.1) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Callorhinus ursinus Annotation Release 100 Annotation Version :: 100 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.1 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..1923 /organism="Callorhinus ursinus" /mol_type="mRNA" /isolate="GAN/ISIS: 27379988/994484" /db_xref="taxon:34884" /chromosome="Unknown" /sex="female" /tissue_type="blood" /dev_stage="adult" gene 1..1923 /gene="VIM" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 8 mRNAs, 152 ESTs, 32 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 19 samples with support for all annotated introns" /db_xref="GeneID:112809998" CDS 205..1605 /gene="VIM" /codon_start=1 /product="vimentin" /protein_id="XP_025709210.1" /db_xref="GeneID:112809998" /translation="
MSTRSVSSSSYRRMFGGPGTGSRPSSTRSYVTTSTRTYNLGSALRPSTSRSLYASSPGGAYATRSSAVRLRSSVPGVRLLQDSVDFSLADAINTEFKNTRTNEKVELQELNDRFANYIDKVRFLEQQNKILLAELEQLKGQGKSRLGDLYEEEMRELRRQVDQLTNDKARFEVERDNLAEDIMRLREKLQEEMLQREEAESTLQSFRQDVDNASLARLDLERKVESLQEEIAFLKKLHDEEIQELQAQIQDQHVQIDMDVSKPDLTAALRDVRQQYESVAAKNLQEAEEWYKSKFADLSEAANRNNDALRQAKQESNEYRRQVQSLTCEVDALKGTNESLERQMREMEENFAVEAANYQDTIGRLQDEIQNMKEEMARHLREYQDLLNVKMALDIEIATYRKLLEGEESRIALPLPNFSSLNLRETNLDSLPLVDTHSKRTLLIKTVETRDGQVINETSQHHDDLE"
misc_feature 244..507 /gene="VIM" /note="Intermediate filament head (DNA binding) region; Region: Filament_head; pfam04732" /db_xref="CDD:428095" misc_feature 508..1434 /gene="VIM" /note="Intermediate filament protein; Region: Filament; pfam00038" /db_xref="CDD:425436" ORIGIN
ggaggggaccctctttcctaacggcttataaaaactgcgccctcggaggggtccggtcctctgccactctcgcttcgggatcccccgcgccagagacgcagcagcgctcccaccgcccacacccactgcgccctcgctcgcctgtcctccccgagccggtccgtgccgccgcagccgcccggcccaccgccaccctctgcagccatgtccaccaggtccgtgtcctcgtcctcctaccgcaggatgttcggcggccccggcaccgggagccggccgagctccacacggagctacgtgaccacgtccacccgcacctacaacctgggcagcgcgttgcgccccagcaccagccgcagcctctatgcctcgtcccccggaggcgcgtacgccacgcgctcctccgccgtgcgcctgcggagcagtgtgcccggcgtgcgcctgctgcaggactcggtggacttctcgctggccgacgccatcaacaccgagttcaagaacacccgcaccaacgagaaagtggagctgcaggagctgaatgaccgttttgccaactacatcgacaaggtgcgcttcctggagcagcagaacaagatcctgctagccgagctcgaacagctcaagggccagggcaagtcgcgcctgggggacctctacgaggaggagatgcgggagctgcgccggcaggtggatcagcttaccaacgacaaggcccgcttcgaggtggagcgcgacaacctggccgaggacatcatgcggctccgggagaagttgcaagaggagatgcttcagagagaggaagccgagagcaccctgcagtctttcagacaggatgttgacaatgcttctttggcacgtcttgaccttgagcgtaaagtggaatccttgcaagaagagattgcctttttgaagaaactgcatgatgaggaaatccaggagctgcaggcccagattcaggaccagcatgtccaaatcgatatggatgtttccaagcctgacctcacggctgccctgcgcgacgtacgccagcagtatgaaagcgtggctgccaagaaccttcaggaggccgaggaatggtacaagtccaagtttgccgacctctctgaggctgctaaccggaacaacgatgctctgcgccaggcaaagcaggagtcaaatgagtaccggagacaggtgcagtccctcacctgcgaagtggacgccctcaaagggactaacgagtctctggaacgccagatgcgtgaaatggaagagaacttcgccgtcgaagctgctaactaccaagacactattggccgcctgcaggatgagattcagaacatgaaggaagagatggcccgtcaccttcgggaataccaggacctgctgaatgtcaagatggctctcgacattgagattgccacctacaggaagctgctggaaggcgaggagagcaggattgctctgcctcttccaaacttttcttccctgaacctgagggaaaccaatctggattccctccctctggttgatactcactcaaaaaggacacttctgattaagacggttgagactagagatggacaggttatcaatgaaacttctcagcatcacgatgaccttgagtaaagagggcacagagtcgatgcagcaatactaccagcaagaataaaaaaagaaatccgtatcttaaagaaacagctttcaagtgcctttctgcagtttttcaggagcgcaagatagatttggaataggaataatctctagttcttaagaaccaacactcttaaaagatttaggagaaagtttacaacataatctagtttacgaagaaaacttgtgctagaatactttttaaaaagtatttttgaataccattaaaactgctttttttccaacaagtatctgaccaacttgtttctgcttcaataaatctttggaaaactc
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@meso_cacase at
DBCLS
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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