2024-04-27 09:54:20, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_025703184 636 bp mRNA linear PLN 11-JUL-2018 DEFINITION Aspergillus vadensis CBS 113365 endo-1,4-beta-xylanase 3 (BO88DRAFT_343350), partial mRNA. ACCESSION XM_025703184 VERSION XM_025703184.1 DBLINK BioProject: PRJNA479920 BioSample: SAMN05661105 KEYWORDS RefSeq. SOURCE Aspergillus vadensis CBS 113365 ORGANISM Aspergillus vadensis CBS 113365 Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Eurotiomycetes; Eurotiomycetidae; Eurotiales; Aspergillaceae; Aspergillus. REFERENCE 1 (bases 1 to 636) AUTHORS Vesth,T.C., Nybo,J., Theobald,S., Brandl,J., Frisvad,J.C., Nielsen,K.F., Lyhne,E.K., Kogle,M.E., Kuo,A., Riley,R., Clum,A., Nolan,M., Lipzen,A., Salamov,A., Henrissat,B., Wiebenga,A., De Vries,R.P., Grigoriev,I.V., Mortensen,U.H., Andersen,M.R. and Baker,S.E. CONSRTM DOE Joint Genome Institute TITLE The genomes of Aspergillus section Nigri reveals drivers in fungal speciation JOURNAL Unpublished REFERENCE 2 (bases 1 to 636) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (06-JUL-2018) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (bases 1 to 636) AUTHORS Kuo,A., Riley,R., Clum,A., Nolan,M., Lipzen,A., Salamov,A., Vesth,T.C., Nybo,J., Theobald,S., Brandl,J., Frisvad,J.C., Nielsen,K.F., Lyhne,E.K., Kogle,M.E., Henrissat,B., Wiebenga,A., De Vries,R.P., Mortensen,U.H., Andersen,M.R., Baker,S.E., Grigoriev,I.V., Nordberg,H.P., Cantor,M.N. and Hua,S.X. CONSRTM DOE Joint Genome Institute TITLE Direct Submission JOURNAL Submitted (15-DEC-2016) DOE Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598-1698, USA COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. This record is derived from an annotated genomic sequence (NW_020292053). ##Metadata-START## Organism Display Name :: Aspergillus vadensis CBS 113365 v1.0 GOLD Stamp ID :: Gp0047311 ##Metadata-END## COMPLETENESS: incomplete on both ends. FEATURES Location/Qualifiers source 1..636 /organism="Aspergillus vadensis CBS 113365" /mol_type="mRNA" /strain="CBS 113365" /culture_collection="CBS:113365" /type_material="culture from type material of Aspergillus vadensis" /db_xref="taxon:1448311" /chromosome="Unknown" gene <1..>636 /locus_tag="BO88DRAFT_343350" /db_xref="GeneID:37207776" CDS 1..636 /locus_tag="BO88DRAFT_343350" /note="Endo-1,4-beta-xylanase A; Xylanase A; 1,4-beta-D-xylan xylanohydrolase A; Xylanase I; Endo-1,4-beta-xylanase 3; Xylanase 3; 1,4-beta-D-xylan xylanohydrolase 3; Xylanase C" /codon_start=1 /product="endo-1,4-beta-xylanase 3" /protein_id="XP_025561877.1" /db_xref="GeneID:37207776" /db_xref="InterPro:IPR001137" /db_xref="JGIDB:Aspvad1_343350" /translation="
MKVTAAFAGLLVTAFAAPVPEPALVSRSAGINYVQNYNGNLGDFTYDESAGTFSMYWEDGVSSDFVVGLGWTTGSSNAITYSAEYSASGSASYLAVYGWVNYPQAEYYIVEDYGDYNPCSSATSLGTVYSDGSTYQVCTDTRTNEPSITGTSTFTQYFSVRESTRTSGTVTVANHFNFWAQHGFGNSDFNYQVVAVEAWSGAGSASVTISS"
misc_feature 88..618 /locus_tag="BO88DRAFT_343350" /note="Glycosyl hydrolases family 11; Region: Glyco_hydro_11; pfam00457" /db_xref="CDD:425692" ORIGIN
atgaaggtcactgcggcttttgcaggacttttggtcacggcattcgcggctcctgtcccggaacctgctctggtgtcgcgaagtgccggtattaactacgttcaaaactacaacggcaaccttggtgatttcacctacgacgagagtgccggaacattttccatgtactgggaagatggagtgagctccgactttgtcgttggtctgggctggaccactggttcttctaacgctatcacctactctgccgaatacagcgcttctggctccgcttcctacctcgctgtgtacggctgggtcaactatcctcaggctgagtactacatcgtcgaggattacggtgattacaacccttgcagctcggccacaagccttggtaccgtgtactctgatggaagcacctaccaagtctgcaccgacactcgaacaaacgaaccgtccatcacgggaacaagcacgttcacgcagtacttctccgttcgagagagcacgcgcacatctggaacggtgactgttgccaaccatttcaacttctgggcgcagcatgggttcggcaatagcgacttcaattatcaagtcgtggcggtggaagcatggagcggtgctggcagcgccagtgtcacaatctcttcttga
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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