2024-03-29 15:17:57, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_025396073 2448 bp mRNA linear PRI 29-JUN-2018 DEFINITION PREDICTED: Theropithecus gelada vimentin (VIM), transcript variant X2, mRNA. ACCESSION XM_025396073 VERSION XM_025396073.1 DBLINK BioProject: PRJNA477372 KEYWORDS RefSeq. SOURCE Theropithecus gelada (gelada) ORGANISM Theropithecus gelada Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Theropithecus. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_037677.1) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Theropithecus gelada Annotation Release 100 Annotation Version :: 100 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.1 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2448 /organism="Theropithecus gelada" /mol_type="mRNA" /isolate="Dixy" /db_xref="taxon:9565" /chromosome="9" /sex="female" /tissue_type="whole blood" /dev_stage="adult" /country="Ethiopia: Simien Mountains" /collection_date="Nov-2017" /collected_by="Simien Mountains Gelada Research Project" gene 1..2448 /gene="VIM" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 15 mRNAs, 11687 ESTs, 35 Proteins, and 80% coverage of the annotated genomic feature by RNAseq alignments" /db_xref="GeneID:112631254" CDS 730..2130 /gene="VIM" /codon_start=1 /product="vimentin" /protein_id="XP_025251858.1" /db_xref="GeneID:112631254" /translation="
MTTRSVSSSSYRRMFGGPGTASRPSSSRSYVTTSTRTYSLGSALRPSTSRSLYASSPGGVYATRSSAVRLRSSVPGVRLLQDSVDFSLADAINTEFKNTRTNEKVELQELNDRFANYIDKVRFLEQQNKILLAELEQLKGQGKSRLGDLYEEEMRELRRQVDQLTNDKARVEVERDNLTEDIMRLREKLQEEMLQREEAENTLQSFRQDVDNASLARLDLERKVESLQEEIAFLKKLHEEEIQELQAQIQEQHVQIDVDVSKPDLTAALRDVRQQYESVAAKNLQEAEEWYKSKFADLSEAANRNNDALRQAKQESNEYRRQVQSLTCEVDALKGTNESLERQMREMEENFAVEAANYQDTIGRLQDEIQNMKEEMARHLREYQDLLNVKMALDIEIATYRKLLEGEESRISLPLPNFSSLNLRETNLDSLPLVDTHSKRTLLIKTVETRDGQVINETSQHHDDLE"
misc_feature 769..1032 /gene="VIM" /note="Intermediate filament head (DNA binding) region; Region: Filament_head; pfam04732" /db_xref="CDD:428095" misc_feature 1033..1959 /gene="VIM" /note="Intermediate filament protein; Region: Filament; pfam00038" /db_xref="CDD:425436" ORIGIN
ttatataattgcctttcatttgaactcattaatcaaattggggtttttaagcaacacctaattaattatttcattggctcaaattatacctttaataacttccaccagggtgaaaaccactgatcactgagttcgattttgaaactacggacgttgagtttcctctttcacccagaattttcagatcttgtttaaaaagttgggtgtggtttcacggggggagggggaagagcgagaggagaccggagggacgggggcggggactctgcaagaaaaaccttcccggtgcaatcgtgatccgggaggcccacgtatggcgcctcttcaaaggctgcagaagtttcttactaacaaaaagtccgcacatcgagcgaagtcaggctttagcgagttataagaacttagaggcgctcttgtcctccaaagggccccaccgcacacatcaaagcgatggcccagctctaagttgataggactgggaaccagcagcacgcgcggagccgcggagactcgagtcaatctggtctaacggtttcccctaaaccgcttagcagccctcaatcggcgggacagcagggcgcgtcctctgccactctcgctccgaggtccccgcgccagagactcagccgcgctcccaccacccacacccaccgcgcccttgtccgcctcttctctaggagccagtccgcgccaccgccgcagcccagcccatcgccaccctccgcagccatgaccaccaggtccgtgtcctcgtcctcctaccgcaggatgttcggcggcccgggcaccgcgagccggccgagctccagccggagctacgtgactacgtccacccgcacctacagcctgggcagcgcgctgcgccccagcaccagccgcagcctctacgcctcgtccccgggcggcgtgtatgccacgcgctcctctgccgtgcgcctgcggagcagcgtgcccggggtgcggctcctccaggactcggtggacttctcgctggccgacgccatcaacaccgagttcaagaatacccgcaccaacgagaaggtggagctgcaggagctgaatgaccgcttcgccaactacatcgacaaggtgcgcttcctggagcagcagaataagatcctgctggccgagctcgagcagctcaagggccagggcaagtcgcgcctgggggacctctacgaggaggagatgcgggagctgcgccggcaggtggaccagctaaccaacgacaaagcccgagtcgaggtggagcgcgacaacctgaccgaggacatcatgcgcctccgggagaaattgcaggaggagatgcttcagagagaggaagccgagaacaccctgcaatctttcagacaggatgttgacaacgcgtctctggcacgtcttgaccttgaacgcaaagtggaatctttgcaagaagagattgcctttttgaagaaactccacgaagaggaaatccaggagctgcaggctcagattcaggaacagcatgtccagatcgatgtggatgtttccaagcctgacctcacggctgccctgcgtgacgtacgtcagcaatatgaaagtgtggctgccaagaacctgcaggaggcagaagaatggtacaagtccaagtttgctgacctctccgaggctgccaaccggaacaatgacgccctacgccaggcaaagcaggagtccaatgaataccggagacaggtgcagtccctcacctgtgaagtggatgcccttaaaggaaccaatgagtccctggaacgccagatgcgtgaaatggaagagaactttgccgttgaagctgctaactaccaagacactattggccgtctgcaagatgagattcagaatatgaaggaggaaatggctcgtcaccttcgtgaataccaagacctgctcaatgttaagatggcccttgacattgagattgccacctacaggaagctgctggaaggcgaggagagcaggatttctctgcctcttccaaacttttcctccctgaacctgagggaaactaatctggattcactccctctggtggacacccactcaaaaaggacacttctgattaagacggttgaaactagagatggacaggttatcaacgaaacttctcagcatcatgatgaccttgaataaaaattgcacacactcggtgcagcaatatattaccagcaagaataaaaaagaaatccatatcttaaagaaacagctttcaagtgcctttctgcagtttttcaggagcgcaagatagatttggaataggaataagctctagttcttaacaaccgacactcctaaaagatttagaaaaaagtttacaacataatctagtttacagaaaaatcttgtgctagaatactttttaaaaggtattttgaatatcattaaaactgctttttttccagcaagtatctgaccaactttttctgcttcaataaatctttggaaaaactc
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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