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2024-03-29 15:17:57, GGRNA.v2 : RefSeq release 222 (Jan, 2024)

LOCUS       XM_025396073            2448 bp    mRNA    linear   PRI 29-JUN-2018
DEFINITION  PREDICTED: Theropithecus gelada vimentin (VIM), transcript variant
            X2, mRNA.
ACCESSION   XM_025396073
VERSION     XM_025396073.1
DBLINK      BioProject: PRJNA477372
KEYWORDS    RefSeq.
SOURCE      Theropithecus gelada (gelada)
  ORGANISM  Theropithecus gelada
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
            Catarrhini; Cercopithecidae; Cercopithecinae; Theropithecus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_037677.1) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Theropithecus gelada Annotation
                                           Release 100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.1
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2448
                     /organism="Theropithecus gelada"
                     /mol_type="mRNA"
                     /isolate="Dixy"
                     /db_xref="taxon:9565"
                     /chromosome="9"
                     /sex="female"
                     /tissue_type="whole blood"
                     /dev_stage="adult"
                     /country="Ethiopia: Simien Mountains"
                     /collection_date="Nov-2017"
                     /collected_by="Simien Mountains Gelada Research Project"
     gene            1..2448
                     /gene="VIM"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 15 mRNAs, 11687 ESTs, 35 Proteins,
                     and 80% coverage of the annotated genomic feature by
                     RNAseq alignments"
                     /db_xref="GeneID:112631254"
     CDS             730..2130
                     /gene="VIM"
                     /codon_start=1
                     /product="vimentin"
                     /protein_id="XP_025251858.1"
                     /db_xref="GeneID:112631254"
                     /translation="
MTTRSVSSSSYRRMFGGPGTASRPSSSRSYVTTSTRTYSLGSALRPSTSRSLYASSPGGVYATRSSAVRLRSSVPGVRLLQDSVDFSLADAINTEFKNTRTNEKVELQELNDRFANYIDKVRFLEQQNKILLAELEQLKGQGKSRLGDLYEEEMRELRRQVDQLTNDKARVEVERDNLTEDIMRLREKLQEEMLQREEAENTLQSFRQDVDNASLARLDLERKVESLQEEIAFLKKLHEEEIQELQAQIQEQHVQIDVDVSKPDLTAALRDVRQQYESVAAKNLQEAEEWYKSKFADLSEAANRNNDALRQAKQESNEYRRQVQSLTCEVDALKGTNESLERQMREMEENFAVEAANYQDTIGRLQDEIQNMKEEMARHLREYQDLLNVKMALDIEIATYRKLLEGEESRISLPLPNFSSLNLRETNLDSLPLVDTHSKRTLLIKTVETRDGQVINETSQHHDDLE"
     misc_feature    769..1032
                     /gene="VIM"
                     /note="Intermediate filament head (DNA binding) region;
                     Region: Filament_head; pfam04732"
                     /db_xref="CDD:428095"
     misc_feature    1033..1959
                     /gene="VIM"
                     /note="Intermediate filament protein; Region: Filament;
                     pfam00038"
                     /db_xref="CDD:425436"
ORIGIN      
ttatataattgcctttcatttgaactcattaatcaaattggggtttttaagcaacacctaattaattatttcattggctcaaattatacctttaataacttccaccagggtgaaaaccactgatcactgagttcgattttgaaactacggacgttgagtttcctctttcacccagaattttcagatcttgtttaaaaagttgggtgtggtttcacggggggagggggaagagcgagaggagaccggagggacgggggcggggactctgcaagaaaaaccttcccggtgcaatcgtgatccgggaggcccacgtatggcgcctcttcaaaggctgcagaagtttcttactaacaaaaagtccgcacatcgagcgaagtcaggctttagcgagttataagaacttagaggcgctcttgtcctccaaagggccccaccgcacacatcaaagcgatggcccagctctaagttgataggactgggaaccagcagcacgcgcggagccgcggagactcgagtcaatctggtctaacggtttcccctaaaccgcttagcagccctcaatcggcgggacagcagggcgcgtcctctgccactctcgctccgaggtccccgcgccagagactcagccgcgctcccaccacccacacccaccgcgcccttgtccgcctcttctctaggagccagtccgcgccaccgccgcagcccagcccatcgccaccctccgcagccatgaccaccaggtccgtgtcctcgtcctcctaccgcaggatgttcggcggcccgggcaccgcgagccggccgagctccagccggagctacgtgactacgtccacccgcacctacagcctgggcagcgcgctgcgccccagcaccagccgcagcctctacgcctcgtccccgggcggcgtgtatgccacgcgctcctctgccgtgcgcctgcggagcagcgtgcccggggtgcggctcctccaggactcggtggacttctcgctggccgacgccatcaacaccgagttcaagaatacccgcaccaacgagaaggtggagctgcaggagctgaatgaccgcttcgccaactacatcgacaaggtgcgcttcctggagcagcagaataagatcctgctggccgagctcgagcagctcaagggccagggcaagtcgcgcctgggggacctctacgaggaggagatgcgggagctgcgccggcaggtggaccagctaaccaacgacaaagcccgagtcgaggtggagcgcgacaacctgaccgaggacatcatgcgcctccgggagaaattgcaggaggagatgcttcagagagaggaagccgagaacaccctgcaatctttcagacaggatgttgacaacgcgtctctggcacgtcttgaccttgaacgcaaagtggaatctttgcaagaagagattgcctttttgaagaaactccacgaagaggaaatccaggagctgcaggctcagattcaggaacagcatgtccagatcgatgtggatgtttccaagcctgacctcacggctgccctgcgtgacgtacgtcagcaatatgaaagtgtggctgccaagaacctgcaggaggcagaagaatggtacaagtccaagtttgctgacctctccgaggctgccaaccggaacaatgacgccctacgccaggcaaagcaggagtccaatgaataccggagacaggtgcagtccctcacctgtgaagtggatgcccttaaaggaaccaatgagtccctggaacgccagatgcgtgaaatggaagagaactttgccgttgaagctgctaactaccaagacactattggccgtctgcaagatgagattcagaatatgaaggaggaaatggctcgtcaccttcgtgaataccaagacctgctcaatgttaagatggcccttgacattgagattgccacctacaggaagctgctggaaggcgaggagagcaggatttctctgcctcttccaaacttttcctccctgaacctgagggaaactaatctggattcactccctctggtggacacccactcaaaaaggacacttctgattaagacggttgaaactagagatggacaggttatcaacgaaacttctcagcatcatgatgaccttgaataaaaattgcacacactcggtgcagcaatatattaccagcaagaataaaaaagaaatccatatcttaaagaaacagctttcaagtgcctttctgcagtttttcaggagcgcaagatagatttggaataggaataagctctagttcttaacaaccgacactcctaaaagatttagaaaaaagtttacaacataatctagtttacagaaaaatcttgtgctagaatactttttaaaaggtattttgaatatcattaaaactgctttttttccagcaagtatctgaccaactttttctgcttcaataaatctttggaaaaactc
//

by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]