2024-04-26 12:25:06, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_024750069 1945 bp mRNA linear MAM 18-APR-2018 DEFINITION PREDICTED: Neophocaena asiaeorientalis asiaeorientalis vimentin (VIM), mRNA. ACCESSION XM_024750069 VERSION XM_024750069.1 DBLINK BioProject: PRJNA449518 KEYWORDS RefSeq. SOURCE Neophocaena asiaeorientalis asiaeorientalis (Yangtze finless porpoise) ORGANISM Neophocaena asiaeorientalis asiaeorientalis Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha; Cetacea; Odontoceti; Phocoenidae; Neophocaena. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_020173682.1) annotated using gene prediction method: Gnomon, supported by mRNA evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Neophocaena asiaeorientalis asiaeorientalis Annotation Release 100 Annotation Version :: 100 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.0 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..1945 /organism="Neophocaena asiaeorientalis asiaeorientalis" /mol_type="mRNA" /sub_species="asiaeorientalis" /db_xref="taxon:1706337" /chromosome="Unknown" /sex="male" /tissue_type="meat" /dev_stage="adult" /country="China: Nanjing" /breed="wild" gene 1..1945 /gene="VIM" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 16 mRNAs, 69 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 8 samples with support for all annotated introns" /db_xref="GeneID:112402877" CDS 225..1625 /gene="VIM" /codon_start=1 /product="vimentin" /protein_id="XP_024605837.1" /db_xref="GeneID:112402877" /translation="
MSSRSVSSSSYRRMFGGPGTASRPSSSRSYVTTATRTYSLGSALRPGTSRSLYASSPGGVYATRSTAMRLRSSVPGVRLLQDSVDFSLADAINTEFKNTRTNEKVELQELNDRFANYIDKVRFLEQQNKILLAELEQLKGQGKSRLGDLYEEEMRELRRQVDQLTNDKARVEVERDNLSEDIMRLREKLQEEMLQREEAESTLQSFRQDVDNASLARLDLERKVESLQEEIAFLKKLHDEEIQELQAQIQEQHVQIDMDVSKPDLTAALRDVRQQYESVAAKNLQEAEEWYKSKFADLSEAANRNNDALRQAKQESNEYRRQVQSLTCEVDALKGTNESLERQMREMEENFAVEAANYQDTIGRLQDEIQNMKEEMARHLREYQDLLNVKMALDIEIATYRKLLEGEESRIALPLPNFSSLNLRETNLDSLPLVDTHSKRTLLIKTVETRDGQVINETSQHHDDLE"
misc_feature 264..527 /gene="VIM" /note="Intermediate filament head (DNA binding) region; Region: Filament_head; pfam04732" /db_xref="CDD:428095" misc_feature 528..1454 /gene="VIM" /note="Intermediate filament protein; Region: Filament; pfam00038" /db_xref="CDD:425436" ORIGIN
ctgcctccgggatggcagtgggaggggaccctgcttcctaactggcttataaaatctgcgccctcggcggggtcccgttctctgccactctcgctccgggctccccgcgccagagactcagcagcgctccctttgcccacacccaccgcgccctcgcgcgcctctcctcccggagctagcccgcgccaccgcagccgcccagcccaccgccgccctctgcagtcatgtccagcaggtccgtgtcctcgtcctcctaccgcaggatgttcggcggccccggcaccgcgagccggccgagctccagccggagctacgtgaccacggccacccgcacctacagcctgggcagcgcgctgcgccccggcaccagccgcagcctctacgcctcgtccccgggcggcgtgtacgccacgcgctccacggccatgcgcctgcggagcagcgtgcccggcgtgcgcctgctgcaggactcggtggacttctcgctggccgacgccatcaacaccgagttcaagaacacccgcaccaacgagaaggtggagctgcaggagctgaacgaccgcttcgccaactacatcgacaaggtgcgcttcctggagcagcagaacaagatcctgctggccgagctcgagcagctcaagggccagggcaagtcgcgcctgggggacctctacgaggaggagatgcgagagctgcgccggcaggtggaccagctcaccaacgacaaagcccgcgtcgaggtggagcgcgacaacctgtccgaggacatcatgcgtctccgggagaagttgcaggaggagatgcttcagagggaggaagccgagagcaccctgcagtctttcagacaggatgttgacaatgcttcattggcacgtctggacctggagcgtaaagtggaatccttgcaggaagagattgccttcttgaagaaactacatgatgaggaaatccaggagctgcaggcccagattcaagaacagcacgtccagatcgatatggacgtttccaagcccgacctcacggctgccctgcgtgacgtccgccagcagtacgagagcgtggccgccaagaacctccaggaggctgaggaatggtacaagtccaagttcgctgacctctccgaggctgctaaccgcaacaacgatgccctgcgccaggccaagcaggagtcgaacgagtaccgtcggcaggtgcagtccctcacctgcgaggtggatgccctcaaaggcaccaacgagtctctggaacgccagatgcgtgaaatggaagagaactttgccgtggaagctgctaactaccaagacactattggccgcctgcaggacgagattcagaacatgaaggaagagatggctcgtcacctgcgtgaataccaagatctgttgaatgttaagatggctctcgacatcgagattgccacctacaggaagctgctggaaggagaggagagcaggattgcgctgcctcttccaaacttttcttccctgaacctgagggaaaccaatctggattcactccctctggttgacacccattcaaaaaggacacttctgattaagacggttgaaaccagagatggacaggttatcaacgaaacttcccagcatcacgatgacctggaataaaaactgcacgtactccatgcggcaaaatactaccagtgagaataaaaaagaaatccgtatcttaaagaaacagctttcaagtgcctttctgcagttttttcaggagtgcaagatagatttgaaataggaataagctctagtccttgagaaccaacactcgtaaaagatttagaaaaaagtttacaacataatctagtttaccgaagacgccttgtgctagaatactttttaaaaagtatttttgaataccattaaaactgcttttttccatcacgtatctgaccaacttgtttctgcttcaataaatctttggaaaactc
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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