LOCUS       XM_024000193            2107 bp    mRNA    linear   VRT 23-FEB-2018
DEFINITION  PREDICTED: Salvelinus alpinus vimentin (vim), mRNA.
ACCESSION   XM_024000193
VERSION     XM_024000193.1
DBLINK      BioProject: PRJNA433373
KEYWORDS    RefSeq.
SOURCE      Salvelinus alpinus (Arctic char)
  ORGANISM  Salvelinus alpinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii;
            Salmoniformes; Salmonidae; Salmoninae; Salvelinus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_036854.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Salvelinus alpinus Annotation
                                           Release 101
            Annotation Version          :: 101
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.0
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2107
                     /organism="Salvelinus alpinus"
                     /mol_type="mRNA"
                     /isolate="IW2-2015"
                     /db_xref="taxon:8036"
                     /tissue_type="liver"
                     /dev_stage="juvenile"
                     /collected_by="Jon Lucas"
                     /linkage_group="LG14"
     gene            1..2107
                     /gene="vim"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 57 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 75 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:111973044"
     CDS             144..1532
                     /gene="vim"
                     /codon_start=1
                     /product="vimentin"
                     /protein_id="XP_023855961.1"
                     /db_xref="GeneID:111973044"
                     /translation="

MNRTTNRQTTSSSSYKRMFGGEGRPGVGMARSTLSSRQYSSPVRSSRMSYSVSSAPPSIYASKNVRLRSSAPMPRLSSDTVDFALSDAINSEFKANRTNEKAEMQHLNDRFASYIDKVRFLEQQNKILLAELEQIKGKGASRIGDLYEDEMRDLRRQVDQLTNEKAHVEVDRDNLGEDIERLREKLQDEMIQKEEAEHNLQSFRQDVDNASLARLDLERKVESLQEEILFLRKLHDEEVAELQAQIQDQHIQIDMDVAKPDLTAALRDVRVQYETLASRNLQESEDWYKSKFADLSEAANRNTDAIRQAKQEANEYRRQVQALTCEVDSLKGTNESMERQMRELEESFGCEANNFQDTISRLEDDIRNMKDEMARHLREYQDLLNVKMALDIEIATYRKLLEGEESRITTPMPNFSSFNLRESMLEARPMIDNLSKKVVIKTIETRDGHVINESTQNHDDLE"

     misc_feature    171..437
                     /gene="vim"
                     /note="Intermediate filament head (DNA binding) region;
                     Region: Filament_head; pfam04732"
                     /db_xref="CDD:428095"
     misc_feature    438..1364
                     /gene="vim"
                     /note="Intermediate filament protein; Region: Filament;
                     pfam00038"
                     /db_xref="CDD:425436"
ORIGIN      

cattggtctactgcagagttctcgctggggtagtactgttcggaggtttcatcacacactgaagtggaagtccagtttgagagaaggcatttacacagcttttttgaagaaagaagaaaccttygggaccaaaggattacaatatgaaccggacaaccaacaggcaaaccacctcttcatcctcttacaagaggatgttcggcggcgaaggacggcctggtgtcgggatggctcggtccaccttgtctagccgccagtactcgagcccggtgcgctcctctcggatgtcctacagcgtctcctccgctccgccgagcatctacgcctccaagaatgtccgacttcgcagcagcgccccgatgccccggctctcatcggacaccgtggacttcgccctgtccgatgccatcaactcggagttcaaagccaaccggaccaacgagaaggcggagatgcagcacctcaatgacaggttcgccagctacatcgacaaagtgcgctttctggagcagcaaaacaagatcctgttagcggagctggagcagataaagggcaaaggcgcgtcccgtatcggggatctgtacgaggatgagatgagggatctgcggaggcaggtggaccagctcaccaatgagaaagcccatgtcgaagtggaccgggacaacctgggagaggacatcgagaggctcagagagaagctccaagatgagatgatccagaaagaggaagcagagcacaacctgcagagcttcagacaggatgtggacaatgcctcccttgctcgtctggacctggagaggaaggtggagtctcttcaggaggaaatcctcttcctcaggaagctgcatgacgaggaggttgctgagctgcaggcacagatccaggatcagcatatccagatcgatatggatgtggccaagcctgatttgacggctgccctaagggacgtgcgtgtgcagtacgagaccttggccagcaggaacctccaggagtctgaagactggtacaaatccaagtttgctgacctgtcggaggctgcgaatcgtaacaccgatgccatccggcaggccaagcaggaggctaacgagtacaggcgtcaggtacaggccctaacctgtgaggtggactctctcaaaggaactaatgagtccatggagcgtcagatgagggagctggaggagagctttggctgcgaggctaataacttccaagacaccatctctcgcctggaggacgacatcaggaacatgaaggatgagatggcccgtcacctcagagagtaccaggaccttctcaacgtcaagatggccctggacatagagatcgccacctacaggaagctgctggagggagaagagagcagaatcaccactcccatgcccaacttctcatcatttaacttgagagaatccatgctggaggcaagaccaatgattgacaacctgtcaaagaaggttgtgatcaagaccattgaaactagagatggtcatgtgatcaatgagtccacccagaaccatgatgacttggagtgaacatcacatagcatgtctctattgagaagagaaaatagttagcagcagcatactgggggggggggggtaaaacactgtcggggatgaggagaaagcaaaatgggatatttctgtttgtgagtaaaactaaacaaacagctttgaaagtgcctttttgacacgttggggtacttgctgatctggtagggttgttgctaggtaggatagacactgtttagaggagatgaaaccagctttactgaatgtttctgtttgaccacagacaccgggcaagtctcaaatgacacttatttttttctatgttatagtgctctactttttatagggctctagtgaaaagtagtgcactaagggaatagggtgtcatttgtgatgcaaccacactgagtctagtttacacttgagctgttagacttagaccatagcaacactttgagcaatggctgtttttttctattctaatttaccaaaatcatggaaaggattgaagcactgtttcatgtacacaaacaagaccaacaccaaactgtcaacgcttctgtaagtcaataaagctttgaggaaaataaaatgta

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