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2024-03-29 21:52:45, GGRNA.v2 : RefSeq release 222 (Jan, 2024)

LOCUS       XM_023408951            1849 bp    mRNA    linear   VRT 26-DEC-2017
DEFINITION  PREDICTED: Seriola lalandi dorsalis vimentin (vim), mRNA.
ACCESSION   XM_023408951
VERSION     XM_023408951.1
DBLINK      BioProject: PRJNA423295
KEYWORDS    RefSeq.
SOURCE      Seriola lalandi dorsalis
  ORGANISM  Seriola lalandi dorsalis
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Actinopterygii; Neopterygii; Teleostei; Neoteleostei;
            Acanthomorphata; Carangaria; Carangiformes; Carangidae; Seriola.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_019524930.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Seriola lalandi dorsalis Annotation
                                           Release 100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.0
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1849
                     /organism="Seriola lalandi dorsalis"
                     /mol_type="mRNA"
                     /isolate="HSWRI2012SDOR001"
                     /sub_species="dorsalis"
                     /db_xref="taxon:1841481"
                     /chromosome="Unknown"
                     /tissue_type="heart"
                     /dev_stage="adult"
                     /ecotype="SW California"
     gene            1..1849
                     /gene="vim"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 66 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 20 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:111657002"
     CDS             90..1457
                     /gene="vim"
                     /codon_start=1
                     /product="vimentin"
                     /protein_id="XP_023264719.1"
                     /db_xref="GeneID:111657002"
                     /translation="
MSYRSAPHSSYKKMFGGDRTAVRTNYSSRQYSSPVRSSRVSFGLSSAPTVYAVKTQRLRSTAAMPRLASENLDFSLSDAINSEFITNRTSEKAQMQSLNDRFANYIEKVRFLEQQNKILLAELEQLRGKGTSRVGDLYEDEMRELRRQVDQLTNEKARVEVHRDNLADDIDRLREKLQDEMSQREEAEANMQSFRQDVDNAALARLDLERKVDSLQEEINFLKKLHDEEMLELQSQIQQQQHVQVDMEIAKPDLTAALRDVRLQYESLASKNIQESEEWYKSKFADLTEAAARNNDALRMAKQEANDYRRQVQALTCEVDALKGTNESMERQMREIEENFSLETGGYQDTIGRLEEDIHNMKDEMARHLREYQDLLNVKMALDIEIATYRKLLEGEESRISTPLPNFSSLNLRETMIDSKPHVESTTTKKVLIKTIETRDGQVINESTQNHDDMD"
     misc_feature    111..356
                     /gene="vim"
                     /note="Intermediate filament head (DNA binding) region;
                     Region: Filament_head; pfam04732"
                     /db_xref="CDD:428095"
     misc_feature    357..1286
                     /gene="vim"
                     /note="Intermediate filament protein; Region: Filament;
                     pfam00038"
                     /db_xref="CDD:425436"
ORIGIN      
ctctgctgatgctgttgggacaagaagagagagagaccaaatcggcgacattactcttgtggctgattgtctgaaaagataccagcaagatgtcttatagatcagctccacattcttcttataagaagatgtttggcggggacagaaccgcggtaaggaccaactactccagccgccagtactccagcccggtgcgctcctcccgggtatccttcggtctctcttcagctccgaccgtctacgctgtaaagacccagaggctccggagcaccgcagccatgccccggctggcctccgagaacttggacttctccttgtctgacgccataaacagcgagttcatcacgaaccgcaccagcgagaaagcgcagatgcagtcgctcaacgaccgcttcgccaactacatcgagaaggtgcgcttcttggagcagcagaacaagatcctgctggcggagctggagcagctgcggggcaaaggtacgtcccgggtcggggatctgtacgaggacgagatgcgggagctgagacgccaggtggaccagctcaccaacgagaaggcccgggtggaggttcaccgggataacctggcagacgacatcgacaggctgagagagaagttgcaggatgagatgtcccagcgggaggaggctgaggccaacatgcagagcttcagacaggatgtggacaatgctgccctcgcaagactggacctggagcggaaggtcgactcactccaggaggaaatcaacttcctcaaaaagctgcatgatgaggaaatgctggagctgcagagtcagatccagcagcagcagcatgtgcaggtggatatggaaatagctaagcctgacctgacagctgctctgagggacgtccgtctgcagtatgagagcctggcctccaaaaacatccaggagtctgaagaatggtacaaatccaagtttgctgacctcaccgaagctgcagccaggaataatgatgctttgaggatggccaagcaggaggccaatgactatagacgccaagttcaggcgcttacttgcgaggtggatgccctcaagggaactaatgagtcaatggagcgccagatgagagagattgaggagaacttctccctggagacgggaggctaccaggacactatcggccgtctcgaggaggacattcataacatgaaggacgagatggcccgtcacctccgagagtaccaagacctcctaaatgtcaagatggcccttgacatcgagatcgccacctataggaagctcctggaaggagaggagagcagaatctccaccccattgccaaacttctcatctctcaacctgagagaaacaatgattgattccaaacctcatgttgaaagcacaacaactaagaaggttctcatcaagaccattgagaccagggatggtcaggtgatcaacgagtcaacccagaaccacgatgacatggactaataatgtctttgtctttgccaaacaaccaacaaaaagcaatacgaagaaacacaattcactggggctacaagcaagcaaacaaaccaacaacacacaaaagcagacagcttcaaaaagtgcctttatatgtgatgatccagttagcctgttagttgacacagactgtattttgcttcctcctctgctgaaagtcttatcttttgtcacatttgtttagacacaataatgaattcagcacaacatagaattcctcactgaggtctacaaaaatctttctttgtagccaaagtagtatttttgattgatagagcatgcacactcatggaaatctgtatgctgaagatgtcacaattgcctgtacgcagcaataaacaattaagactgaaactcaa
//

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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]