2024-03-29 21:52:45, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_023408951 1849 bp mRNA linear VRT 26-DEC-2017 DEFINITION PREDICTED: Seriola lalandi dorsalis vimentin (vim), mRNA. ACCESSION XM_023408951 VERSION XM_023408951.1 DBLINK BioProject: PRJNA423295 KEYWORDS RefSeq. SOURCE Seriola lalandi dorsalis ORGANISM Seriola lalandi dorsalis Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Carangaria; Carangiformes; Carangidae; Seriola. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_019524930.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Seriola lalandi dorsalis Annotation Release 100 Annotation Version :: 100 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.0 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..1849 /organism="Seriola lalandi dorsalis" /mol_type="mRNA" /isolate="HSWRI2012SDOR001" /sub_species="dorsalis" /db_xref="taxon:1841481" /chromosome="Unknown" /tissue_type="heart" /dev_stage="adult" /ecotype="SW California" gene 1..1849 /gene="vim" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 66 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 20 samples with support for all annotated introns" /db_xref="GeneID:111657002" CDS 90..1457 /gene="vim" /codon_start=1 /product="vimentin" /protein_id="XP_023264719.1" /db_xref="GeneID:111657002" /translation="
MSYRSAPHSSYKKMFGGDRTAVRTNYSSRQYSSPVRSSRVSFGLSSAPTVYAVKTQRLRSTAAMPRLASENLDFSLSDAINSEFITNRTSEKAQMQSLNDRFANYIEKVRFLEQQNKILLAELEQLRGKGTSRVGDLYEDEMRELRRQVDQLTNEKARVEVHRDNLADDIDRLREKLQDEMSQREEAEANMQSFRQDVDNAALARLDLERKVDSLQEEINFLKKLHDEEMLELQSQIQQQQHVQVDMEIAKPDLTAALRDVRLQYESLASKNIQESEEWYKSKFADLTEAAARNNDALRMAKQEANDYRRQVQALTCEVDALKGTNESMERQMREIEENFSLETGGYQDTIGRLEEDIHNMKDEMARHLREYQDLLNVKMALDIEIATYRKLLEGEESRISTPLPNFSSLNLRETMIDSKPHVESTTTKKVLIKTIETRDGQVINESTQNHDDMD"
misc_feature 111..356 /gene="vim" /note="Intermediate filament head (DNA binding) region; Region: Filament_head; pfam04732" /db_xref="CDD:428095" misc_feature 357..1286 /gene="vim" /note="Intermediate filament protein; Region: Filament; pfam00038" /db_xref="CDD:425436" ORIGIN
ctctgctgatgctgttgggacaagaagagagagagaccaaatcggcgacattactcttgtggctgattgtctgaaaagataccagcaagatgtcttatagatcagctccacattcttcttataagaagatgtttggcggggacagaaccgcggtaaggaccaactactccagccgccagtactccagcccggtgcgctcctcccgggtatccttcggtctctcttcagctccgaccgtctacgctgtaaagacccagaggctccggagcaccgcagccatgccccggctggcctccgagaacttggacttctccttgtctgacgccataaacagcgagttcatcacgaaccgcaccagcgagaaagcgcagatgcagtcgctcaacgaccgcttcgccaactacatcgagaaggtgcgcttcttggagcagcagaacaagatcctgctggcggagctggagcagctgcggggcaaaggtacgtcccgggtcggggatctgtacgaggacgagatgcgggagctgagacgccaggtggaccagctcaccaacgagaaggcccgggtggaggttcaccgggataacctggcagacgacatcgacaggctgagagagaagttgcaggatgagatgtcccagcgggaggaggctgaggccaacatgcagagcttcagacaggatgtggacaatgctgccctcgcaagactggacctggagcggaaggtcgactcactccaggaggaaatcaacttcctcaaaaagctgcatgatgaggaaatgctggagctgcagagtcagatccagcagcagcagcatgtgcaggtggatatggaaatagctaagcctgacctgacagctgctctgagggacgtccgtctgcagtatgagagcctggcctccaaaaacatccaggagtctgaagaatggtacaaatccaagtttgctgacctcaccgaagctgcagccaggaataatgatgctttgaggatggccaagcaggaggccaatgactatagacgccaagttcaggcgcttacttgcgaggtggatgccctcaagggaactaatgagtcaatggagcgccagatgagagagattgaggagaacttctccctggagacgggaggctaccaggacactatcggccgtctcgaggaggacattcataacatgaaggacgagatggcccgtcacctccgagagtaccaagacctcctaaatgtcaagatggcccttgacatcgagatcgccacctataggaagctcctggaaggagaggagagcagaatctccaccccattgccaaacttctcatctctcaacctgagagaaacaatgattgattccaaacctcatgttgaaagcacaacaactaagaaggttctcatcaagaccattgagaccagggatggtcaggtgatcaacgagtcaacccagaaccacgatgacatggactaataatgtctttgtctttgccaaacaaccaacaaaaagcaatacgaagaaacacaattcactggggctacaagcaagcaaacaaaccaacaacacacaaaagcagacagcttcaaaaagtgcctttatatgtgatgatccagttagcctgttagttgacacagactgtattttgcttcctcctctgctgaaagtcttatcttttgtcacatttgtttagacacaataatgaattcagcacaacatagaattcctcactgaggtctacaaaaatctttctttgtagccaaagtagtatttttgattgatagagcatgcacactcatggaaatctgtatgctgaagatgtcacaattgcctgtacgcagcaataaacaattaagactgaaactcaa
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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