2024-04-20 03:55:59, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_023143644 952 bp mRNA linear PLN 29-NOV-2017 DEFINITION PREDICTED: Cucurbita maxima paired amphipathic helix protein Sin3-like 3 (LOC111493793), mRNA. ACCESSION XM_023143644 VERSION XM_023143644.1 DBLINK BioProject: PRJNA418295 KEYWORDS RefSeq. SOURCE Cucurbita maxima (winter squash) ORGANISM Cucurbita maxima Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_019272035.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cucurbita maxima Annotation Release 100 Annotation Version :: 100 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.0 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..952 /organism="Cucurbita maxima" /mol_type="mRNA" /cultivar="Rimu" /db_xref="taxon:3661" /chromosome="Unknown" /tissue_type="Young leaves" /dev_stage="Seedlings" /country="China: Beijing" gene 1..952 /gene="LOC111493793" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments" /db_xref="GeneID:111493793" CDS 60..602 /gene="LOC111493793" /codon_start=1 /product="paired amphipathic helix protein Sin3-like 3" /protein_id="XP_022999412.1" /db_xref="GeneID:111493793" /translation="
MKNRGEADGSIRKLTAEDALEFLKNVKDVIGNETEKYEEFLQLMKDLAFQRIDTVGVITGVKRLFRGHNDLILGFNTFLPQRYAIACPLEDETPPRRRRPVKLGDALEYISEVKRRFEGEFHIFNSFMRNLHLYKRGKKPLSELHREVCVLMQDHPDLVEGFADFLPCPSLTTTSNNDRC"
misc_feature 60..>560 /gene="LOC111493793" /note="Histone deacetylase complex, regulatory component SIN3 [Chromatin structure and dynamics]; Region: Sin3; COG5602" /db_xref="CDD:227889" ORIGIN
ttcgttctactgctcaactcttgctcattcgacaaagcttccgcagattttcttcagaaatgaagaaccgcggggaggcagatggcagtatccggaaattaacagcggaggatgccctagaatttctcaagaatgtgaaggacgtcattggaaacgagacggaaaaatatgaagaatttcttcaactcatgaaggatttagcgtttcaaagaattgacactgtgggcgtcataacaggggtaaagcgtctattcagaggtcataatgacctgattttgggctttaatacctttttgccacaaagatatgcaatagcttgtcctcttgaggatgaaacgcctcctcgaaggaggcggcctgttaaacttggagacgctttggaatatatcagtgaggttaagagacggtttgaaggtgagttccatatattcaattcatttatgagaaatttgcatttgtacaaaagaggaaaaaagcctctaagtgagctccaccgggaggtttgtgtactgatgcaagaccacccagaccttgttgagggttttgctgattttcttccttgtccttcactcacaacaacctcaaacaatgatcggtgttgaccgtcctgatgaagaaggtatgtctttaattgagaagatgaatcaaaagttaccagaagttgatgttccacaacagtttgtgaaatgccttgatgtttttgacagggaaataatccctccataggaactgcattctatggtggctctactaattacacgtgtagctgacgtggatgcggaacacagggaagatttctataagcgttcaactttcaggaatggatgcaggatttacaaatattaccttgaaaaaacgacaatgaccaatccaaaagccataaacaaaaaaattgaagtaattaaacacaaaatcaatagtttaaaaatatagtggatatcatttaaggcta
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This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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