LOCUS       XM_022757894            1843 bp    mRNA    linear   VRT 04-OCT-2017
DEFINITION  PREDICTED: Seriola dumerili vimentin (vim), mRNA.
ACCESSION   XM_022757894
VERSION     XM_022757894.1
DBLINK      BioProject: PRJNA412910
KEYWORDS    RefSeq.
SOURCE      Seriola dumerili (greater amberjack)
  ORGANISM  Seriola dumerili
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Actinopterygii; Neopterygii; Teleostei; Neoteleostei;
            Acanthomorphata; Carangaria; Carangiformes; Carangidae; Seriola.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_019174546.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Version          :: Seriola dumerili Annotation Release
                                           100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 7.4
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1843
                     /organism="Seriola dumerili"
                     /mol_type="mRNA"
                     /isolate="Sdu_G_001"
                     /db_xref="taxon:41447"
                     /chromosome="Unknown"
                     /country="Japan:Kochi, Yawata-gun"
                     /collection_date="2014-06"
     gene            1..1843
                     /gene="vim"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 65 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 1 sample with support for all annotated introns"
                     /db_xref="GeneID:111230982"
     CDS             84..1451
                     /gene="vim"
                     /codon_start=1
                     /product="vimentin"
                     /protein_id="XP_022613615.1"
                     /db_xref="GeneID:111230982"
                     /translation="

MSYRSAPHSSYKKMFGGDRTAVRTNYSSRQYSSPVRSSRVSFGLSSAPTVYAVKTQRLRSTAAMPRLASENLDFSLSDAINSEFITNRTSEKAQMQSLNDRFANYIEKVRFLEQQNKILLAELEQLRGKGTSRVGDLYEDEMRELRRQVDQLTNEKARVEVHRDNLADDIDRLREKLQDEMSQREEAEANMQSFRQDVDNAALARLDLERKVDSLQEEINFLKKLHDEEMLELQSQIQQQQHVQVDMEIAKPDLTAALRDVRLQYESLASKNIQESEEWYKSKFADLTEAAARNNDALRMAKQEANDYRRQVQALTCEVDALKGTNESMERQMREIEENFSLETGGYQDTIGRLEEDIHNMKDEMARHLREYQDLLNVKMALDIEIATYRKLLEGEESRISTPLPNFSSLNLRETMIDSKPHVESTTTKKVLIKTIETRDGQVINESTQNHDDMD"

     misc_feature    105..350
                     /gene="vim"
                     /note="Intermediate filament head (DNA binding) region;
                     Region: Filament_head; pfam04732"
                     /db_xref="CDD:428095"
     misc_feature    351..1280
                     /gene="vim"
                     /note="Intermediate filament protein; Region: Filament;
                     pfam00038"
                     /db_xref="CDD:425436"
ORIGIN      

gctgatgctgttgggacaagaagagagagaccaaatcggcgacattactcttgtggctgattgtctgaaaagataccagcaagatgtcttatagatcagctccacattcttcttataagaagatgtttggcggggacagaaccgcggtaaggaccaactactccagccgccagtactccagcccggtgcgctcctcccgggtatccttcggtctctcttcagccccgaccgtctacgctgtaaagacccagaggctccggagcaccgcagccatgccccggctggcctccgagaacttggacttctccttgtccgacgccataaacagcgagttcatcacgaaccgcaccagcgagaaagcgcagatgcagtcgctgaacgaccgcttcgccaactacatcgagaaggtgcgcttcttggagcagcagaacaagatcctgctggcggagctggagcagctgcggggcaaaggtacgtcccgggtcggggatctgtacgaggacgagatgcgggagctgagacgccaggtggaccagctcaccaacgagaaggcccgggtggaggttcaccgggataacctggcagacgacatcgacaggctgagagagaagttgcaggatgagatgtcccagcgggaggaggctgaggccaacatgcagagcttcagacaggatgtggacaatgctgccctcgcaagactggacctggagcggaaggtcgactcgctccaggaggaaatcaacttcctcaaaaagctgcatgatgaggaaatgctggagctgcagagtcagatccagcagcagcagcatgtgcaggtggatatggaaatagctaagccggacctgacagctgctctgagggacgtccgtctgcagtatgagagcctggcctccaaaaacatccaggagtctgaagaatggtacaaatccaagtttgctgacctcaccgaagctgcagccaggaataatgatgctttgaggatggctaagcaggaggccaatgactatagacgccaagttcaggcgcttacttgcgaggtggatgccctcaagggaactaatgagtcaatggagcgccagatgagagagattgaagagaacttctccttggagacgggaggctaccaggacactatcggccgtctcgaggaggacattcataacatgaaggacgagatggcccgtcacctccgagagtaccaagacctcttaaatgtcaagatggcccttgacatcgagatcgccacctataggaagctgctggaaggagaggagagcagaatctccaccccattgccaaacttctcatctctcaacctgagagaaacaatgattgattccaaacctcatgttgaaagcacaacaactaagaaggttctcatcaagaccattgagaccagggatggtcaggtgatcaacgagtcaacccagaaccacgatgacatggactaataatgtctttgtctttgccaaacaacaaacaaaaagcaatacgaagaaacacaattcactggagctacaagcaagcaaacaaaccaacaacacacaaaagcagacagcttcaaaaagtgcctttatatgtgatgatccagttagcctgttagttgacacagactgtattttgcttcctcctctgctgaaagtcttatcttttgtcacatttgtttagacacaataatgaattcagcacaacatagaattcctcactgaggtctacaaaaatctttctttgtagccaaagtagtatttttgattgatagagcatgcacactcatggaaatctgtatgctgaagatgtcacaattgcctgtacgcagcaataaacaattaagagtgaaactcaa

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