LOCUS       XM_021470110            1905 bp    mRNA    linear   VRT 15-JUN-2017
DEFINITION  PREDICTED: Danio rerio vimentin (vim), transcript variant X1, mRNA.
ACCESSION   XM_021470110
VERSION     XM_021470110.1
DBLINK      BioProject: PRJNA13922
KEYWORDS    RefSeq.
SOURCE      Danio rerio (zebrafish)
  ORGANISM  Danio rerio
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Actinopterygii; Neopterygii; Teleostei; Ostariophysi;
            Cypriniformes; Danionidae; Danioninae; Danio.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_007135.7) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Version          :: Danio rerio Annotation Release 106
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 7.4
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1905
                     /organism="Danio rerio"
                     /mol_type="mRNA"
                     /strain="Tuebingen"
                     /db_xref="taxon:7955"
                     /chromosome="24"
     gene            1..1905
                     /gene="vim"
                     /gene_synonym="cb28"
                     /note="vimentin; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 33 ESTs, 33 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 123 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:140599"
                     /db_xref="ZFIN:ZDB-GENE-011212-3"
     CDS             236..1489
                     /gene="vim"
                     /gene_synonym="cb28"
                     /codon_start=1
                     /product="vimentin isoform X1"
                     /protein_id="XP_021325785.1"
                     /db_xref="GeneID:140599"
                     /db_xref="ZFIN:ZDB-GENE-011212-3"
                     /translation="

MASRTSTSSYKRMFGGERPAAARSTFSSRQYSSPVRVSSSRTSYNYSSAPPSVYASKSLRVRSGAPLPRLATDTLDFGLAEAINTEFKANRTNEKAEMQHLNDRFASYIDKVRFLEQQNKILIAELEQLRGKGASRVGDLYEDEMRELRRQVDQLTGEKSKVEVDRDNLGEDIERLKERLQEEMLQREDAENSLRSFRQDVDNASLARLDLERKVESLQEEIAFLKKLHDEELAEMQIQMQEQHLQIDMEVAKPDLTAALKDVRQQYETLASRNLQESEDWYKSKFADLSEAAARNNETIRLAKQEANDYRRQLQALTCDLEALKGTNESLERQMRELEDSFSMEASGYQDTIGRLEDDIRNMKDEMARHLREYQDLLNVKMALDIEIATYRKLLEGEESRITSPFPNFSSLSLRDN"

     misc_feature    248..511
                     /gene="vim"
                     /gene_synonym="cb28"
                     /note="Intermediate filament head (DNA binding) region;
                     Region: Filament_head; pfam04732"
                     /db_xref="CDD:428095"
     misc_feature    512..1438
                     /gene="vim"
                     /gene_synonym="cb28"
                     /note="Intermediate filament protein; Region: Filament;
                     pfam00038"
                     /db_xref="CDD:425436"
ORIGIN      

ataaacaaatcttccagctttttccccatgaaactctctcactgcaggttctggagggtctcctcacccctccgccccggcggcgtgcctgcgtcacagagcctcccgcaccgttatgtcattagcatagggagtggactataaaaaccagccgaacctccgcagtatccccgtttggtctggacagggtgcgatatttagacttcaacaataacccgcaaactaaaggattaccatggccagtcgaacaagcacatcttcctataaaaggatgttcggcggggagcgtcccgcggcggcgcggtccactttctccagccggcagtacagcagcccagtgcgcgtctcctcctcgcgcacgtcctacaactacagcagcgcgcctccatccgtgtacgcgagtaaaagcttgagagtgcgctccggcgcgccccttcccagactcgccaccgacactctggatttcgggcttgccgaggccataaacaccgagtttaaagccaaccggaccaatgagaaagcggagatgcagcacctcaacgaccggttcgccagttacatagacaaagtgcgctttctggagcagcagaacaagatcctgatcgcggagctggagcagctgcggggcaaaggagcgtcccgggtcggagatctgtacgaggatgagatgcgggagctgcggagacaggtggatcagctgaccggggaaaagagcaaagtggaggtggaccgggacaacctaggggaggacatcgagcgcctcaaggagagacttcaagaagagatgcttcaaagagaagatgctgagaacagcctccgcagcttcagacaggatgttgataacgcctctctggctcgtctggacctggagagaaaggtggagtccctccaagaagagatcgctttcttgaagaagcttcacgatgaggaacttgctgagatgcagatccagatgcaggagcagcatttgcagatcgatatggaagtggccaaacctgacctgaccgccgctctgaaagacgtccggcagcagtacgagactctggcctccagaaacctgcaggagtctgaggattggtacaaatccaagtttgctgacctgtcagaagctgctgctcgaaacaatgaaactatccgtctggccaaacaggaggccaatgattaccgtcgccagctccaggctctcacttgtgacttggaagctctcaaaggaacgaatgagtctctggagcgtcagatgagagaactagaggacagcttctccatggaggcgtctggttatcaggacaccatcggccgtctggaggacgacattcgcaacatgaaggatgagatggcacgtcatctgcgggaataccaggatctgctcaatgttaaaatggccctggatattgagatcgccacctacaggaaactgctagaaggagaagaaagcaggatcacctcaccatttcccaacttttcatcattaagcctgcgagataattaacgagtccacccaaaacgaggatctggaatgagctgcatgtgaacccgaggcactgaagatccacgctggagtaaattgacaagaatgaagtttcctctgttgtttctgttgagagtaaaagaaaagaaaagaaaaacagctttaaagtgccttctttgcattgccacattagagcggtctgttattagagctgaaagctgaaagtgtaggccactgagtaaaccagctttatcctgggtttatgtttaccacgatgtctgtagtttacactgtcgaagaccacagcaatactgcttcaactttttctgttttgtatgattttcacaaacgaccaaaaacgtgatgagctcgcgtcttctgcaccattagaccaaacaacaaactgacacaaattcaataaaccttttgaaaaataa

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