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2024-03-29 01:28:09, GGRNA.v2 : RefSeq release 222 (Jan, 2024)

LOCUS       XM_021201341            4342 bp    mRNA    linear   ROD 18-JUN-2019
DEFINITION  PREDICTED: Mus pahari argonaute RISC catalytic component 3 (Ago3),
            transcript variant X1, mRNA.
ACCESSION   XM_021201341
VERSION     XM_021201341.2
DBLINK      BioProject: PRJNA387191
KEYWORDS    RefSeq.
SOURCE      Mus pahari (shrew mouse)
  ORGANISM  Mus pahari
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Coelomys.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_034595.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Jun 18, 2019 this sequence version replaced XM_021201341.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Mus pahari Annotation Release 101
            Annotation Version          :: 101
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.2
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4342
                     /organism="Mus pahari"
                     /mol_type="mRNA"
                     /db_xref="taxon:10093"
                     /chromosome="6"
                     /sex="female"
                     /tissue_type="tail"
     gene            1..4342
                     /gene="Ago3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 12 mRNAs, 44 Proteins, and 98%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 3 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:110323961"
     CDS             277..2859
                     /gene="Ago3"
                     /codon_start=1
                     /product="protein argonaute-3 isoform X1"
                     /protein_id="XP_021057000.1"
                     /db_xref="GeneID:110323961"
                     /translation="
MEIGSAGPTGAQPLFIVPRRPGYGTMGKPIKLLANCFQVEIPKIDVYLYEVDIKPDKCPRRVNREVVDSMVQHFKVTIFGDRRPVYDGKRSLYTANPLPVAATGVDLDVTLPGEGGKDRPFKVSVKFVSRVSWHLLHEVLTGGTLPEPLELDKPINTNPVHAVDVVLRHLPSMKYTPVGRSFFSAPEGYDHPLGGGREVWFGFHQSVRPAMWKMMLNIDVSATAFYKAQPVIQFMCEVLDIHNIDEQPRPLTDSHRVKFTKEIKGLKVEVTHCGTMRRKYRVCNVTRRPASHQTFPLQLENGQTVERTVAQYFREKYTLQLKYPHLPCLQVGQEQKHTYLPLEVCNIVAGQRCIKKLTDNQTSTMIKATARSAPDRQEEISRLVRSANYETDPFVQEFQFKVRDEMAHVTGRVLPAPMLQYGGRNRTVATPSHGVWDMRGKQFHTGVEIKMWAIACFATQRQCREEILKGFTDQLRKISKDAGMPIQGQPCFCKYAQGADSVEPMFRHLKNTYSGLQLIIVILPGKTPVYAEVKRVGDTLLGMATQCVQVKNVIKTSPQTLSNLCLKINVKLGGINNILVPHQRPSVFQQPVIFLGADVTHPPAGDGKKPSIAAVVGSMDAHPSRYCATVRVQRPRQEIIQDLASMVRELLIQFYKSTRFKPTRIIFYRDGVSEGQFRQVLYYELLAIREACISLEKDYQPGITYIVVQKRHHTRLFCADRTERVGRSGNIPAGTTVDTDITHPYEFDFYLCSHAGIQGTSRPSHYHVLWDDNFFTADELQLLTYQLCHTYVRCTRSVSIPAPAYYAHLVAFRARYHLVDKEHDSAEGSHVSGQSNGRDPQALAKAVQIHQDTLRTMYFA"
     misc_feature    493..777
                     /gene="Ago3"
                     /note="N-terminal domain of argonaute; Region: ArgoN;
                     pfam16486"
                     /db_xref="CDD:435368"
     misc_feature    805..957
                     /gene="Ago3"
                     /note="Argonaute linker 1 domain; Region: ArgoL1;
                     pfam08699"
                     /db_xref="CDD:430160"
     misc_feature    958..1320
                     /gene="Ago3"
                     /note="PAZ domain, argonaute_like subfamily. Argonaute is
                     part of the RNA-induced silencing complex (RISC), and is
                     an endonuclease that plays a key role in the RNA
                     interference pathway. The PAZ domain has been named after
                     the proteins Piwi,Argonaut, and Zwille; Region:
                     PAZ_argonaute_like; cd02846"
                     /db_xref="CDD:239212"
     misc_feature    order(1114..1116,1159..1161,1201..1203,1213..1215,
                     1267..1269,1288..1290,1294..1296)
                     /gene="Ago3"
                     /note="nucleic acid-binding interface [nucleotide
                     binding]; other site"
                     /db_xref="CDD:239212"
     misc_feature    1453..2730
                     /gene="Ago3"
                     /note="PIWI domain, Argonaute-like subfamily. Argonaute is
                     the central component of the RNA-induced silencing complex
                     (RISC) and related complexes. The PIWI domain is the
                     C-terminal portion of Argonaute and consists of two
                     subdomains, one of which provides the...; Region:
                     Piwi_ago-like; cd04657"
                     /db_xref="CDD:240015"
     misc_feature    order(1864..1866,1876..1878,1912..1923,1930..1932,
                     1954..1956,1963..1965,1975..1977,1987..1989)
                     /gene="Ago3"
                     /note="5' RNA guide strand anchoring site [active]"
                     /db_xref="CDD:240015"
     misc_feature    order(2068..2070,2074..2076,2284..2286,2698..2700)
                     /gene="Ago3"
                     /note="active site"
                     /db_xref="CDD:240015"
ORIGIN      
gaccgggaaaagcgagcagcagcggcagccgcggcgacggcggcggagcggctggcggggcgggaagggaagctgcacgcgtcagcagctgtaggcgacgcaagttccggacctggctccagcgtcctcgctcaggactgtcgccgctcttacctcgctgcggacgggctgtctctcccgactgtgcctcctgtgcccggagctttccgagggcgtccgctcctcgcctctgtggtggcacctttctcttgtgaagcactccccccagctccatgaatggaaatcggctccgcaggacccactggggcccagcccctattcatagtgcccagaagacctgggtatggcaccatgggcaaacccattaaactgttggctaactgttttcaagttgaaattccaaagattgatgtctacctctatgaggttgacatcaaaccagacaagtgtcctagaagagtgaacagagaagtagttgattcaatggttcagcattttaaagtgactatatttggagaccgtagaccagtttatgatggaaaaagaagcctttacacagccaatccacttcctgtggcagccactggggtagatttagatgttacattacctggggaaggtggaaaagatcgacctttcaaggtgtcagtcaaatttgtgtctcgagtcagttggcacctcttacatgaagtactgactggagggactttgcctgagccactggaattagacaagccaatcaacactaacccggtccatgccgttgacgtggtgctccgacatctgccctctatgaaatatacgcctgtggggcgttcctttttctcagctccagaaggatatgaccaccctctgggagggggcagggaagtatggtttggattccatcagtctgttcggcctgccatgtggaaaatgatgctaaatattgatgtttctgccactgccttttacaaagcacaacctgtaattcagttcatgtgtgaagttcttgacattcacaacattgatgaacaacccagacccctgactgattctcatcgggtaaaattcactaaggagataaaaggtctgaaagttgaagtgactcattgtggaacaatgagacggaaataccgtgtttgtaatgtaacgagaaggcctgccagccaccaaacctttcctttacagctagaaaatggccaaactgtggagaggactgtggctcagtatttcagagaaaagtacacacttcagctgaagtacccacaccttccctgtctgcaagtggggcaggagcagaagcatacatacctgccactagaagtctgtaatattgtggctgggcaaaggtgtatcaagaaactaacagacaatcagacttctactatgataaaggcaacagcaagatctgcaccagatagacaagaggaaattagcagattggtaagaagtgcaaattatgaaacggatccattcgttcaggagtttcaatttaaagtgcgggatgaaatggcccatgtgaccggacgcgtacttccagcacctatgctccagtacggaggacggaaccggacagtagcaacacccagccacggagtgtgggacatgcgaggaaaacagttccacacaggagtcgaaatcaaaatgtgggctattgcttgctttgccacacagaggcagtgcagagaagaaatactaaaaggtttcacagaccagctgcgaaagatttccaaggatgcagggatgcccatccaaggtcagccatgcttctgcaaatacgcacagggggcagacagtgtggagcccatgttccgacatctcaagaacacttattctggactgcagctcattatcgtcatcctgcccgggaagacacctgtgtatgcggaggtgaaacgtgtaggagatacacttttgggtatggccacacagtgtgtgcaagtcaagaatgtaataaaaacatctcctcaaactctttcaaacttgtgcctaaagatcaatgttaaacttggaggaatcaataatattcttgtacctcatcaaagaccttctgtgttccagcaaccagtgatcttcctgggcgcagatgtcacacacccacctgctggtgacggaaagaagccctccattgctgctgttgtaggtagtatggatgcccatccaagcagatactgtgccacagtaagagttcagagaccccgacaggaaatcatccaggacttggcctccatggtccgggaactgctcatccaattttataagtcaacccgattcaaacctactcgtataatcttttatcgggatggtgtttcagaaggacagtttagacaggtattatattatgagctactggcaattcgagaagcctgtatcagtttggaaaaagactatcaacctggaataacctacattgttgttcagaagagacatcatacgcggttgttctgtgctgatagaacagaaagggttggaagaagcggcaacatcccagctggaaccacagtggatactgacattactcacccgtatgaattcgacttttatctctgtagtcatgctggaatacagggtaccagccgtccttcccactatcatgttttatgggatgacaacttctttactgcagatgaacttcagctacttacttaccagctctgtcacacttacgtacgctgtacaagatctgtttctatccctgcaccagcatattacgctcacctggtggcattcagagccagatatcatcttgtggacaaggaacatgacagtgctgaaggaagccatgtttcaggacagagcaatgggcgagatccacaagctcttgccaaggctgtacagattcaccaagataccttacgcacaatgtactttgcttaaccagtccaagtttattctccgagacgaagagatgaaaggcgaaccaacatacaatgtatgtttccagtggagtcaattcactagggaggcctccagccatacagaagccagtactgtgtagaagaggtctggtccttatgttgatccaaggaaaatcgtttacactgtcaaagaacgcagcaccattatacactagggagccagcccgctgcttttttgcagactcctgtagaagatgcatcaccgttgtttattctcacttcttacagtctaacccttttaatgcctttacctcaagttgcttagcagcacaactatctctgcaaaaaagtaaagaaaaagtgaatggtggtttaaaaacacacacttacacaaataatgattgttcagttatatgtgcagaaaaagtaatgtgcatctattcttgtaaaggagtctgtattttcaataccttcacattacttcatgtgcatatgtatctagatctaggttactgatatgtatgtgtctgtgtgtatatcttatagttcattcccctggggaactctttccttatatccctccttaggccacactcgtttccttcactgcctcccttgccttcagcatctatactttggtccctatagctacaaatgacattcctatgttcatgcatatggttcacttgaaggaaggcttgacaaattagacttctggttttactttatgtccctatttctagctcctgtctctcacacaggagtcctcagctcctgatgccatgtttgtgagcgtctgctcctttttgctctggatttaccacatgtgcactgtgtttagaaacagtggcaacctggggattcttttccgtagtgagtttgttaaagctgctataaatacgaaaccttgttggacatctttctgatcgatgcaaatgttctaaagcctctgtttgtatgagttatacccggaaatccctccaaaactctataggatggaaaaaggaaggaactggggttggtttggttttggctttgctagtttacttactgccctcataccttaatgtgattttctcacatgtaaatatatacatacacacacatgttgaagtatagctccctttgccgtcatgttcattagaatagtactttaataattataaactatattggctacatttttttctagaactataatcatgtttaagaatggaggcagtttttgctctcttttagtgcaataagcaattttacaggaaagtcgtgtctgtcgtctttaccgtggataacaggaagaacagacatctgtcatttaaagggaacaaagtaatatggccttaatttcagaagaagagtttcataattttcagttttaaagcaattccttaaaataattttagccaaaggagtaaaagcgattaaaggcacctcagctatgaggttagaagcagagttgaacttcactttttaaaaatgacagtgagggctggtgagatggc
//

by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]