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2024-03-29 15:23:49, GGRNA.v2 : RefSeq release 222 (Jan, 2024)

LOCUS       XM_021200288            7407 bp    mRNA    linear   ROD 18-JUN-2019
DEFINITION  PREDICTED: Mus pahari argonaute RISC component 1 (LOC110323159),
            transcript variant X3, mRNA.
ACCESSION   XM_021200288
VERSION     XM_021200288.2
DBLINK      BioProject: PRJNA387191
KEYWORDS    RefSeq.
SOURCE      Mus pahari (shrew mouse)
  ORGANISM  Mus pahari
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Coelomys.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_034595.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Jun 18, 2019 this sequence version replaced XM_021200288.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Mus pahari Annotation Release 101
            Annotation Version          :: 101
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.2
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7407
                     /organism="Mus pahari"
                     /mol_type="mRNA"
                     /db_xref="taxon:10093"
                     /chromosome="6"
                     /sex="female"
                     /tissue_type="tail"
     gene            1..7407
                     /gene="LOC110323159"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 5 mRNAs, 7 Proteins, and 99%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 3 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:110323159"
     CDS             791..2911
                     /gene="LOC110323159"
                     /codon_start=1
                     /product="protein argonaute-1 isoform X3"
                     /protein_id="XP_021055947.1"
                     /db_xref="GeneID:110323159"
                     /translation="
MPHRVGACARGTSSLPVPARYTPVGRSFFSPPEGYYHPLGGGREVWFGFHQSVRPAMWKMMLNIDVSATAFYKAQPVIEFMCEVLDIRNIDEQPKPLTDSQRVRFTKEIKGLKVEVTHCGQMKRKYRVCNVTRRPASHQTFPLQLESGQTVECTVAQYFKQKYNLQLKYPHLPCLQVGQEQKHTYLPLEVCNIVAGQRCIKKLTDNQTSTMIKATARSAPDRQEEISRLMKNASYNLDPYIQEFGIKVKDDMTEVTGRVLPAPILQYGGRNRAIATPNQGVWDMRGKQFYNGIEIKVWAIACFAPQKQCREEVLKNFTDQLRKISKDAGMPIQGQPCFCKYAQGADSVEPMFRHLKNTYSGLQLIIVILPGKTPVYAEVKRVGDTLLGMATQCVQVKNVVKTSPQTLSNLCLKINVKLGGINNILVPHQRSAVFQQPVIFLGADVTHPPAGDGKKPSITAVVGSMDAHPSRYCATVRVQRPRQEIIEDLSYMVRELLIQFYKSTRFKPTRIIFYRDGVPEGQLPQILHYELLAIRDACIKLEKDYQPGITYIVVQKRHHTRLFCADKNERIGKSGNIPAGTTVDTNITHPFEFDFYLCSHAGIQGTSRPSHYYVLWDDNRFTADELQILTYQLCHTYVRCTRSVSIPAPAYYARLVAFRARYHLVDKEHDSGEGSHISGQSNGRDPQALAKAVQVHQDTLRTMYFA"
     misc_feature    857..1009
                     /gene="LOC110323159"
                     /note="Argonaute linker 1 domain; Region: ArgoL1;
                     pfam08699"
                     /db_xref="CDD:430160"
     misc_feature    1010..1372
                     /gene="LOC110323159"
                     /note="PAZ domain, argonaute_like subfamily. Argonaute is
                     part of the RNA-induced silencing complex (RISC), and is
                     an endonuclease that plays a key role in the RNA
                     interference pathway. The PAZ domain has been named after
                     the proteins Piwi,Argonaut, and Zwille; Region:
                     PAZ_argonaute_like; cd02846"
                     /db_xref="CDD:239212"
     misc_feature    order(1166..1168,1211..1213,1253..1255,1265..1267,
                     1319..1321,1340..1342,1346..1348)
                     /gene="LOC110323159"
                     /note="nucleic acid-binding interface [nucleotide
                     binding]; other site"
                     /db_xref="CDD:239212"
     misc_feature    1505..2782
                     /gene="LOC110323159"
                     /note="PIWI domain, Argonaute-like subfamily. Argonaute is
                     the central component of the RNA-induced silencing complex
                     (RISC) and related complexes. The PIWI domain is the
                     C-terminal portion of Argonaute and consists of two
                     subdomains, one of which provides the...; Region:
                     Piwi_ago-like; cd04657"
                     /db_xref="CDD:240015"
     misc_feature    order(1916..1918,1928..1930,1964..1975,1982..1984,
                     2006..2008,2015..2017,2027..2029,2039..2041)
                     /gene="LOC110323159"
                     /note="5' RNA guide strand anchoring site [active]"
                     /db_xref="CDD:240015"
     misc_feature    order(2120..2122,2126..2128,2336..2338,2750..2752)
                     /gene="LOC110323159"
                     /note="active site"
                     /db_xref="CDD:240015"
ORIGIN      
tcgttcccgtccgccccctgggcccatcggtcgcgcctgcgcactggcagctactcgggcgctagcaggaggagctgctgcaggctccgcggcggcggcaacggaggctgcgggggcgacagcgcgagcggccgggcttcgggggggagccgagcccggcccgggagcccgagcagtgcaagtgcgaggtacctaggcccctcacgctggactcctcagtctcccggccgcctgtcctccgcacgggtatatgggatggaagcgggaccctcgggagcagctgcaggtgcctacctgcctcccctgcagcaggtattccaggcacctcgccggcctggcattggcactgtgggcaaaccaatcaagcttctggccaattactttgaggtggacattcctaagattgacgtttaccattacgaggtggacatcaagccggataagtgtcctcgcagagtcaaccgggaggtggtggaatacatggtccagcatttcaaaccacagatctttggggatcgcaagcctgtgtacgatggaaagaagaacatttacacggtcacagcactgcccattggcaatgagagggttgactttgaggtgacaatccctggggaagggaaggatagaatttttaaggtctccatcaagtggctagccattgtgagctggcgcatgctgcatgaagccttggtcagtggccagatccctgtgcccttggagtctgtgcaagccctggatgtggccatgaggcacctggcatctatgaggccagggctcctccttgcccaggatgcctcacagggtgggggcctgtgcccgagggaccagttctctgcctgtccctgccaggtacacccctgtgggccgctccttcttctcaccgcctgagggctactaccacccgctggggggtgggcgcgaggtctggttcggctttcaccagtctgtgcgccctgccatgtggaagatgatgctcaacattgatgtctcagccactgccttctacaaagcacagccagtgattgagttcatgtgtgaggtcctggacatcaggaacatagatgaacaacccaagcccctcacggattcccagcgtgttcggtttaccaaggagataaaaggtctgaaggtggaagtgacccactgtggacagatgaaaaggaaataccgcgtgtgtaatgttacccgccgccctgctagccatcagacgttccccttgcagctggagagtggacagactgtggagtgcactgtggcacagtatttcaagcagaaatataaccttcagctcaagtaccctcacctgccctgcctacaggttgggcaagaacagaagcatacctatttgccccttgaggtctgtaacattgtggctgggcagcggtgcattaagaagctgactgacaaccagacttcaaccatgataaaggctacagctaggtccgccccagacagacaggaggagatcagccgcctgatgaagaatgccagctacaacctggatccctacatccaggaatttggaatcaaagtgaaggatgacatgacggaggtgacaggacgtgtgctgccggcgcccatcttgcagtatggcggccggaaccgggccattgctacacccaaccaaggtgtctgggacatgcgcgggaaacagttctacaatgggattgagatcaaagtctgggccatcgcctgcttcgcaccccagaaacagtgtcgggaagaggtgctcaagaacttcacagaccagcttcggaagatttccaaggatgcagggatgcccatccagggtcagccatgcttctgcaaatacgcacagggggcagacagcgtggagcccatgttccggcatctaaagaacacctactcaggactgcagctcattatcgtcatcctgcccgggaagacaccagtgtatgctgaagtgaaacgtgtcggagatacactcttgggaatggcaacacagtgtgtgcaggtgaagaatgtggtcaagacctcacctcagactctgtccaacctctgcctcaagatcaatgtcaaactcggtggcattaataatatcctagtcccacaccagcgctccgctgtttttcaacagccagtgattttcttgggagcagatgttacacatcccccagctggggatgggaagaaaccatctatcacagcagtggtaggcagtatggatgcacaccccagccgatactgtgccaccgtgcgtgtgcagcgcccacggcaggagatcattgaagacttgtcctatatggtgcgtgagctgctcatccagttctacaagtccacccgtttcaagcccacccgaatcatcttctaccgagatggggtccctgagggccagctgccccagattcttcactatgagctgcttgccattcgagatgcatgcatcaaactggaaaaagactaccagcctgggatcacatatattgtggtgcagaagcgccatcacacccgcctcttttgtgctgacaagaatgagcggattgggaagagtggtaacatcccagcagggaccactgtggacaccaacatcacccacccatttgagttcgacttctatctgtgcagccatgcaggcatccagggtaccagccgaccatcccattattatgtcctttgggatgacaaccgtttcacagcagatgaactccagatcttgacataccagctgtgccacacttatgtacgatgcacacgttctgtctctatcccagcacctgcctactatgctcgcttggtggctttccgggcacgataccacctggtggacaaggaacatgacagtggagaggggagccacatatcggggcaaagcaatgggcgagacccccaggccctggccaaagctgtgcaggttcaccaggatactctacgcaccatgtacttcgcttgaaggcgaacgctgttacctcactggatagaagaagaaagctttccgagccctgggagctgtaccacccaaatccagaggaagcaaggcagagggaggtggggtcggaaggagtataagaggccttgtttctatctacagagggggtataagggtgggaagaggaccagcaagacagactaccagccagaaatcactgatagcaacctcattgtcctccaaccctctccccatcttgtcatattcgacccccttggaccaaaaggggcatcactagtgcccaccatacacacagttgtctcatgtgactcacagtgctaaagactcatgctcaacagcttgctagggtcagctctgcagccctgtggtcaaatgctggtatgtttgggtttgatatattctagatgagaaagtgggtgggaagagggcaggaatttttaggagccttaatcagaaaaggtctagatttgtttaaggaaaaaaaggaaaacagactcagatcaatattttaggatactagatgttttcatgggttcagaatccactttgtaggaagatttgtaatgctgatgatttgggttgctcctcccagctgccaccccgtcccatcattcctctccacattctctaccccatacgcctcttccctgacagacatccagtccctcgtaacacttaaggcactatggcacttagctctgaggtgacatgaccctgtcttccttccgcctgctggtgggtaaccagtgccttcctgtaacggtaatgctgcagaactgcaaccttttgtacctttctctgtgggatggggtgtgggtgggagaggaggtagggagggagggaagaaatagcccaacgccagcaagcctccagccagaatgccagctaattttcatttgaaggaattgacttccataatcattgagcttttaaaaaaagatcaccacctctagatggttaaaatccattgacatttgcactttcagacgcgacaagtctccgagctgctgaggtgactggcccttggcctttcccctgtagcctcctcttttccctggccccaccaccaccctgccaggtctagagttactctcatagtatttctcattcttggcttcttttccccctgatggtaaagtctctagtttcaatatttcttaactggggtgtcttacagcagaagatcgtaaggactaaaataagaaaacaaaaaaactaaatgttatttttataccataacttgagtctattgccaaaatctggaaattccctcccatacttgatgagtctgcatcccagaaacatggagccgtaagagggaactgtggacctgacttatgttctggcctggctaagtagggggtggttttctccccaaggtgtggttcagcctctgtccttcctctgtgcagataaaaccttgttctcgagatggcctctctccatggcgctgtcctgcactcttccctgtaagtgcatcttccccttctggactggactgtcctttaattccctgactaaccaagactctagcccgtcctcggggcaggctggggaattttgctgctcccatttgcttctgtttacacaaatgaaattttcctgtttcccactagggcatgcgagtgggtggcatgggcttttcttttttcacccctctcttgaggttctgggttcagctgtcttgcaggactggaaaagaagtgggttctagctttgtccttgctgaccttgaagcaaggccccctctttccttgactgttcagttttcttcctgcattattgcttgggatagggagtttgaacctccgtgtacaggttccccttctgaggagcctgagcttaggactgacttactctggtggtgaagccatgaaactttagatctagcccaggcttagaggccagctggagaaaggaaggtctgaaccctggcctatggagtcaaaacctttccccaagagcccatgtatagacccagatttgctatgcaaatagtccagattcagaaatggctggctacattgttcagtaacttcccaacaggtagcacaaatactccttatggaaaaagcccaggactgttcagtagttcctcctgtacttcttttctgctggctacagtatggagtgccccatgggcacaggcccagctggagaacagaacggagggctctgggaagaggcagctcactggagagcctacattccttacacaagtgcctaaacagagtgatgccaacactccatctgccctgtccatcgccttcatagacagtctacttcgtgttccatcaccctttgggaagggagctcttcacagacagtgtgctgtcaacttgggtacatttgggggcttggattaagggcagtactccaggagggtccagtcattcaccagcatttgcagatgcccatagggaacaacaggtggctgtcacgactcccagcaacaagtttttgttctctccttttttctttgcctcactctctccagttggattttaagctagaatgaaaagcagtttcggtcctttggtatttatgtgccatccaagaaataaaagcaagagaatgctgggcacgatggcccatgtctgtaattctgttatctcagcactaaggctgaagcagaagattttcaagttcagggtccacctgggctactcagtgaattccaggccagtgtgcactatgtagcaagaccatgtctccaaaaaaaagactgagaaaaatgacttgggtgacacatcttgctgtgattttaaataattctttgagacttaactactgaccatgtgggttcctctcatttaaaggcagtatgcacacattaaaaacagtgttgccgagcctcagcttgtttggatttggtgtaagtggtgcattgtaccgagctctgggaggattccagcctcatcttagacagctctttctcctccccccactccctcccatgcctccaccccacccaactattcggctttccctttcctcttctcgccttccctggcttccttttccttctccctcttccctcagcttgcttgctggctggcctgcctgcctggctgcctgtgtgataatgaattctctgcatggctgcaatgatcccactgttagttggcaaggtcaggcttagctcattgactacagaagaccaaaatcctgtttctcatgcccagtggtgttagccctgggttgcactgtcctcaagcttacactaggtcagagcagcaggcctgtctgacaaaattagtagggtttctggcaggttcagcgcctctccattctatggaggggtttggagaaaaggcagtgaaagagtgttgctttgaattcagtccagtgtgatctattggttgaggtgctattgccagcctgttgggatcagcctggagctactgttactgggaacttatccttggactttgactaaagttgaacaaagtatggaactgctctaaaaatctagttctcaactgcaacataggtcctctgtgactgagcagcaatgctttccaacagttttctttttaaccagaattctatgaatgatgccagggacacagttttcttagctgggccatagaaagtctacaaggctgctaagtgttgtagacctggcatcaggcatcacaaaggaggatggaatttcttccctttcagggtagaagagtcacctcttacctagccaaaaggcagttttgggaattcctgtcaggaggaaaggtttggttttgctttttaatttactgggctttagatggtagttcattatgccttccttgggcagggatcatggcagggatacgcaaggcactctaatactcggccttctaagcagactgggaaagggggattctctggttttctctttctccccatttactaggacttgccttctccctgagccacgagagaggctgggttggtgctctccccttactctgctcctactgacttagaacctctggctgctgtacgatagcccaggaaagggaatggaaagaatgggctcaaaacaataatgtaaggaaggtggtttccttccttaaaaagggaaatcagaaactctccaagaattgtgtaagtaaagacaatgtgtctgaatgcactgagtcctctggtgtcatagcaataaggaaaaatgaattgacttcctgtgcacacagtctaacctgactggtgtatgatgttgcacttagcagccatgtggtgggcatgtgtgactactctgggtttcactttattttctaaactttttattcctctcaagtccagcatggatggggaaatgtccctggagccccgcagctgtgtacttgtttgcatttgtttcccattgagacttgtgtttgtgtcctgctttgagctgtaccctgtcccgtccattgtgaaattatcccagcagttgtaatgtacagttcccttctcaagcaagcaacagcagcacaaccttgtgttttataaagacaacagtggcttttatttctaaa
//

by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]