LOCUS       XM_021071723            5231 bp    mRNA    linear   MAM 13-MAY-2017
DEFINITION  PREDICTED: Sus scrofa testis and ovary specific PAZ domain
            containing 1 (TOPAZ1), mRNA.
ACCESSION   XM_021071723
VERSION     XM_021071723.1
DBLINK      BioProject: PRJNA28993
KEYWORDS    RefSeq; corrected model.
SOURCE      Sus scrofa (pig)
  ORGANISM  Sus scrofa
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae;
            Sus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_010455.5) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Version          :: Sus scrofa Annotation Release 106
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 7.4
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            frameshifts :: corrected 4 indels
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-372               AEMK02000085.1     9809340-9809711
            373-2839            AEMK02000085.1     9810323-9812789
            2840-2901           AEMK02000085.1     9823157-9823218
            2902-2963           AEMK02000085.1     9824195-9824256
            2964-2964           "N"                1-1
            2965-3026           AEMK02000085.1     9824257-9824318
            3027-3071           AEMK02000085.1     9832450-9832494
            3072-3072           "N"                1-1
            3073-3091           AEMK02000085.1     9832495-9832513
            3092-3128           AEMK02000085.1     9834453-9834489
            3129-3129           "N"                1-1
            3130-3237           AEMK02000085.1     9834490-9834597
            3238-3323           AEMK02000085.1     9836729-9836814
            3324-3449           AEMK02000085.1     9837526-9837651
            3450-3513           AEMK02000085.1     9839449-9839512
            3514-3665           AEMK02000085.1     9851425-9851576
            3666-3758           AEMK02000085.1     9851782-9851874
            3759-3788           AEMK02000085.1     9854070-9854099
            3789-3789           "N"                1-1
            3790-3874           AEMK02000085.1     9854100-9854184
            3875-3941           AEMK02000085.1     9857161-9857227
            3942-4116           AEMK02000085.1     9858378-9858552
            4117-4217           AEMK02000085.1     9859492-9859592
            4218-4383           AEMK02000085.1     9862199-9862364
            4384-4548           AEMK02000085.1     9869454-9869618
            4549-4752           AEMK02000085.1     9871194-9871397
            4753-4936           AEMK02000085.1     9874460-9874643
            4937-5231           AEMK02000085.1     9878337-9878631
FEATURES             Location/Qualifiers
     source          1..5231
                     /organism="Sus scrofa"
                     /mol_type="mRNA"
                     /isolate="TJ Tabasco"
                     /db_xref="taxon:9823"
                     /chromosome="13"
                     /sex="female"
                     /breed="Duroc"
     gene            1..5231
                     /gene="TOPAZ1"
                     /note="The sequence of the model RefSeq transcript was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: inserted 4 bases in 4 codons;
                     Derived by automated computational analysis using gene
                     prediction method: Gnomon. Supporting evidence includes
                     similarity to: 6 ESTs, 1 long SRA read, 1 Protein, and 94%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 32 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:100624393"
     CDS             162..5156
                     /gene="TOPAZ1"
                     /note="The sequence of the model RefSeq protein was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: inserted 4 bases in 4 codons"
                     /codon_start=1
                     /product="LOW QUALITY PROTEIN: testis- and ovary-specific
                     PAZ domain-containing protein 1"
                     /protein_id="XP_020927382.1"
                     /db_xref="GeneID:100624393"
                     /translation="

MRRPPPSGPATAPGREGDTRGPRKRGRRSGPESSEVEDSGPEAGRREESRQKRRMVARASEREEVESDQSAREKRKVTEVSSDDPQPGTDLVRKESLTSSESFQKVEYSEFQNMAFLQSSGKESLVEGIKRKIRIKKCKSLESPPLKITENKSSQNIKVEFQDELYKNTLKYSCNSLSPGVENNPILKLQDYNYFPHSKRFNGENSLACKPDGGYMHVPENSSELKKENPRSLADKSDANNIFQLLQTEENVMPVNKLLLEENDLYQSKNNSLLSCLQSEKNKYSLEESSVGKKTKKRMKVSEKGDEMVFEVKFSKVYNQSELVLQENQTGAESKEAETLEAKKCPIKALRKINHDTLSPVNHLLSLPETLGKKTSPEHPVNAMFQNTLEPLLKEETTIASEPLGSRSMDPEEYFKSMKSSVVKSPSSCHPIEKRSSREDLKNEAEESKLSCRRTIPMTGKRTWPCYSCARISAQCWKKTSLPQSNNSLPGSLECFRQDDFLKQQANQTYLTDARLMLQSSLTETNSESSSKEKLDSNLNCLSSGSAVEPTLMVKKEPIINDDKKLKSEELSRSESEVISNATEDTPLTCMTQSLIGSKKKDRGNFTKLNLTVASQDGQEANNSINKTIHRKACVAKQTLVVPDLVKILNTGRLTNFKIPLLKNKTEKRKEINARSSEREVYSPLELLDNLSGTEVRQNRTKEDVATVTSGPQSLSIQNSVIPVQVGTDSYCSKSSCIISSSFLKHGKGSKPSNHISKPGNVISNKEAVSLTVENTFSHDPGCIEKSPALCSNEQKTFEPVSSEASGRKITENFAEIKVGFPDILKAYEDDVLLIDVIQDDPDLFGVSNEGELSLSSEVPMLSQEPSVAEERLSTDSKHMKLPEKKEPRDDLRELPVLDPGPVKSEICASLSAANEIKHDSKGANISLEITDETXADEKLGDISEHTKRSDLDEKCRFSDQVTIQAEKENXYEVCKSSDSKNTELLVGDXSLTALGPKPLCLSVPVAPLDLIARQEDTLLKPWMNDFRFPGKHSLLKLQNSDIYELFKREKTVGVFQKPLGLMIPHRYCKFHFNTLRGCERSQCKFAHVPEQGDEKVCMDVLKKYISINELCLLQRAVNMFMEYYRNFPPGMHFDLQVLNDLLNSLLKHCLLKEVFQVVNLSIMIKMLPALKILLKIFEHVATMKLRNAVPALIDIFCKLVEAGMVLDPXYFNYIVKLLYQVQASKQEITAVLEMKSRLQMRQFKKNWKCDLESALKEIEHCKEKGDWTKLGNLYVNVKMSCEKFVDFQRFCACIAETLTKDCKEERSGVPFCEFAETVSKDPQNSEVDKTLLGRIGISAIYFYHKLLQWSKGRKVLDKLYELKIHFTSLKGLIGPEKLAPRCQIVNIAAEIFLKSGSLDGAIWVLRESEWIISTPLWPCDRLDVLNRHNLLCTIAHEILAKSLYRQTFEVLQNLPGFQNSQETVEVSQYSLLFNKLLDACIESNSLGMSSSVAEFMISKNIPIDFSFLRRLITSLGRSCLWLKARAHYKSALSLGCYPPLEGNLYRKLLLIPSYLSEIEMLLAIEIFLVSNASSIQSPGTSTQMLQIVLKRCEENKSRSKDDYQAAVERLIMAARISDPKLFIKHMTVNVNKEQVYSLEHCSALKWLKENMKWAGKVWLFNNR"

     misc_feature    3936..4463
                     /gene="TOPAZ1"
                     /note="Putative aspartate racemase; Region:
                     Asp_Glu_race_2; pfam14669"
                     /db_xref="CDD:464250"
ORIGIN      

tccggtaccggggcttaggtggcgggcggcgaggcgcggcgcgggccggggcggagttgggggccgaagatccctggcggtaggagtagacttcgcgcggccggtaggctccagccaggaggtgtggcgggcctctgcggacactaggcggcccagagcggatgcggcggccgccgccctcgggcccagcgacggccccggggcgtgagggcgacacgcgaggtcccaggaagcgaggccggcggtccggacccgagtcaagcgaggtggaagatagcggtcctgaggccgggaggcgcgaggagagcagacaaaagaggaggatggtggcccgggcgtctgagagagaagaggtggaaagtgaccagtcggccagggaaaaaagaaaagttactgaagtctcaagtgatgatccacagccagggactgacctggtaagaaaggaatcgttaaccagttcggaatctttccaaaaagtggaatacagtgaatttcaaaatatggctttcttgcagtcttcgggtaaggaaagtttggtagaaggtattaaaagaaaaattcgcattaaaaaatgtaaaagcttagaaagcccacctctcaaaataactgaaaataagtcttcacaaaatattaaggttgaattccaagatgaactgtacaagaatactctgaaatattcttgtaacagcttgtcccctggagtagaaaataatcccattttaaaattacaggattacaattatttcccccattccaagcgttttaatggtgaaaatagccttgcatgtaaacctgatggtggatatatgcatgtaccagaaaattcctcagagttaaagaaagaaaaccctaggagtcttgcagataagagtgacgcaaataatatttttcagcttttacaaactgaagaaaatgtaatgccagtaaataagttactgcttgaagagaatgatttataccaaagtaaaaataacagtttgctttcctgccttcaaagtgaaaaaaataaatattcgctagaggagagcagtgttgggaaaaaaaccaaaaaaaggatgaaggtgtctgaaaaaggagatgaaatggtttttgaggtgaagttctctaaagtgtataaccagtctgaattggtgttacaagaaaaccaaacaggtgctgaaagtaaagaagcagagactttagaggctaaaaaatgtcctataaaggctttgagaaagataaaccatgatacactgtcaccagtgaatcatttattaagtcttcctgaaacattggggaaaaaaacaagtcctgaacatcctgtaaatgctatgtttcagaacacccttgagccacttttgaaagaagaaacaacgattgcttcagagcccttaggatctagaagcatggatccagaagagtattttaagtctatgaaaagctcagtagtgaagtcacctagcagttgccatcctattgaaaagagatcttcaagggaagacttgaagaatgaagctgaagaatctaagttaagctgtcgcagaacaataccaatgactggcaagagaacttggccttgttactcatgcgctagaatttctgcccagtgttggaaaaagacttccttgccacaatcaaataactctcttcctgggtctttggaatgttttaggcaagatgatttccttaaacagcaagcaaatcaaacttacttaactgacgccagattaatgctacagagttccctaacagaaacaaacagtgaatcttcaagtaaagaaaaattggattctaatttaaattgtttatcttcaggctctgcagtagaacctactttaatggttaaaaaagaacctataatcaatgatgacaaaaaattgaagtcagaggaacttagcagaagtgagtcagaggtcatttctaatgctactgaagatactccattaacctgtatgactcaaagcttaataggaagtaaaaaaaaagatagagggaattttacaaaacttaatttaacagtggcttctcaggatggccaggaagccaataactctataaacaaaactattcatcgaaaagcgtgcgtggctaagcagacacttgtggttccagatttggtcaagatactgaacacaggacggctgactaattttaaaattcctttacttaagaacaaaacagaaaaaagaaaagaaataaatgccaggtcatcagagagagaagtatatagtcccctagaacttcttgacaatttatctgggacagaggtaagacagaataggactaaagaagatgttgccacagtaacttcaggacctcaatcgttgagcatacaaaacagtgtaattccagtacaagttggtactgactcatactgcagtaagagttcctgtattatttcttcaagctttctaaagcatggtaagggtagtaaaccatctaaccacatctctaaaccaggcaatgttatttctaataaggaagctgtttctctcacagttgagaataccttttctcatgatcctgggtgtatagagaaaagtcctgccctctgctctaatgaacaaaaaacattcgaaccagtttcctctgaagctagtggtagaaaaattactgagaacttcgcagaaattaaagtggggtttccagatattcttaaagcatatgaagatgatgtcctcttaattgatgtaattcaagatgacccagacctctttggagtctccaatgaaggggagctctcactttcttcagaggttcccatgttaagccaggagcccagtgttgccgaagagcgcctatcaacagactccaagcacatgaaacttccagaaaaaaaagaaccaagagatgacttgagagaactccctgtgctagatcctggaccagtgaagtcagagatctgtgcttccttatcagcagcaaatgagataaaacatgattccaaaggtgcaaacatttccttagaaattactgatgagactnctgcagatgaaaaactgggagacatcagtgaacatacaaaacgttcagacttggatgaaaagtgtagattttcagaccaggtgactattcaagccgaaaaagaaaatntttatgaagtttgcaaaagcagcgattctaaaaatacagagcttctggttggtgacntttcacttacagcactgggtcccaaacctctgtgtttatcagtgccagtggcacctttggatctcattgctcgtcaggaagacacactactgaagccctggatgaatgatttcagatttccaggaaaacattctctcctaaagctgcagaattctgacatttatgaactatttaagagggaaaaaactgtgggggtgttccagaagccccttgggttgatgataccccatagatattgcaaatttcattttaatacattacgtggctgtgagcgatcacagtgcaagtttgctcacgtgcctgagcaaggggatgaaaaggtttgcatggatgtgcttaagaagtatataagtatcaacgagttgtgtttgctacagcgtgcagtaaacatgtttatggaatactacagaaattttcctccgggtatgcactttgatttacaggtgctaaatgaccttttaaattctttactcaaacactgtttattgaaagaagtatttcaggtagtgaacctcagcataatgattaaaatgctgcctgctctgaaaatattactaaaaatatttgagcatgtggcaactatgaaattaaggaatgctgtacctgctctaattgatatcttttgcaagcttgttgaagctgggatggtactggacccangatactttaactatattgttaagcttttataccaagtacaagcttccaagcaagaaataactgcagttctggaaatgaaatccaggttacagatgaggcaatttaaaaagaactggaagtgtgatttagagtcagccttgaaagaaatagagcattgtaaagaaaaaggtgactggaccaaattgggaaatttatacgttaatgtaaaaatgagctgcgaaaaatttgtggatttccagagattttgtgcttgtattgctgaaacactaacaaaagactgtaaagaagagagatcaggtgttccattttgtgaatttgctgaaacagttagcaaagatccacaaaatagtgaagtagataaaactttgctgggaagaattggaatcagtgctatatacttctatcacaagctgttgcagtggtccaagggaaggaaggtcttggataaactgtatgaattaaaaatacattttacaagtttaaaaggacttatagggcctgagaagttagcgccaagatgtcaaattgtgaatattgcagcagaaattttcctaaaaagtggaagcctagatggtgccatttgggtgttaagggagtcagaatggatcatcagtacaccactgtggccttgtgatagactggatgtgctcaaccggcataatctgctttgtacaattgcacatgaaatcttagcaaagagcctctacagacagacatttgaagttttgcaaaatctaccaggttttcaaaattctcaagaaactgtggaggtctcacagtatagccttctttttaataaacttctagatgcctgtatagaaagcaatagtcttggtatgtcatcctctgtagcagaattcatgatttcaaagaacatccctattgatttttcctttcttagaagattaattacttctttgggaaggagttgtttatggctcaaagccagagcccactacaaaagtgcgctttcactgggttgctacccaccactggagggaaatttgtaccggaaacttctactaattccttcctatttgtctgagattgaaatgcttttagctattgaaatcttcctggtatctaatgctagtagtattcagagtcctggaacttctacacagatgctgcagatagttttaaaaagatgcgaagaaaacaaatctcggagcaaggacgattatcaagctgcagtggaaagattaattatggctgctcgtatatcagatccaaagcttttcattaagcacatgaccgtcaatgttaataaggaacaggtttatagtttggaacattgttctgccctcaaatggttgaaagagaatatgaagtgggctggaaaggtttggcttttcaataaccgttagttattaaagactttttttttaagttcaagtaatcattgttgaaaataaaaggcaataaaaatagttttcaccata

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