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2024-03-28 20:22:09, GGRNA.v2 : RefSeq release 222 (Jan, 2024)

LOCUS       XM_016880050            1064 bp    mRNA    linear   PLN 25-APR-2021
DEFINITION  PREDICTED: Gossypium hirsutum homeobox-leucine zipper protein
            ATHB-7-like (LOC107945900), mRNA.
ACCESSION   XM_016880050
VERSION     XM_016880050.2
DBLINK      BioProject: PRJNA713846
KEYWORDS    RefSeq.
SOURCE      Gossypium hirsutum (cotton)
  ORGANISM  Gossypium hirsutum
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
            Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
            Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae;
            Gossypium.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_053448.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Apr 25, 2021 this sequence version replaced XM_016880050.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Gossypium hirsutum Annotation
                                           Release 101
            Annotation Version          :: 101
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.6
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1064
                     /organism="Gossypium hirsutum"
                     /mol_type="mRNA"
                     /isolate="1008001.06"
                     /db_xref="taxon:3635"
                     /chromosome="D12"
     gene            1..1064
                     /gene="LOC107945900"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 27 long SRA reads, 4 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 159 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:107945900"
     CDS             76..813
                     /gene="LOC107945900"
                     /codon_start=1
                     /product="homeobox-leucine zipper protein ATHB-7-like"
                     /protein_id="XP_016735539.1"
                     /db_xref="GeneID:107945900"
                     /translation="
MRSYHIQPQKEDQILVGEYTQRIIEDPFSGMPEITTTKKKNNNKNKRRFSDEQIRSLESMFESESRLEPRKKLEVAKDLGLQPRQVAIWFQNKRARRKSKQLERDYTMLQSNYDNLASKYESLKKEKQALAFQLQKLKDLVKKPKEEDDGQCCGDQQVITMEGEAIKSDSEEQHSFSMERSEHGLGVLSDDDSTIMTSYFELEQEPTSFITMVELGPSGEDWHSFETDGLFDQSSNGYQWWDFWS"
     misc_feature    217..369
                     /gene="LOC107945900"
                     /note="Homeobox domain; Region: Homeobox; pfam00046"
                     /db_xref="CDD:425441"
     misc_feature    order(217..219,337..339,346..351,358..360)
                     /gene="LOC107945900"
                     /note="specific DNA base contacts [nucleotide binding];
                     other site"
                     /db_xref="CDD:238039"
     misc_feature    373..498
                     /gene="LOC107945900"
                     /note="Homeobox associated leucine zipper; Region: HALZ;
                     pfam02183"
                     /db_xref="CDD:426641"
ORIGIN      
tagcaagaacaagaaatccaatctcaaaccccaagaccaagatatagatatgctttggtttatggggttctaaaaatgcgatcatatcatattcaaccacagaaagaagatcaaatccttgtaggagaatatacacaaaggatcatagaagatccattttccggcatgcctgaaattactacgaccaagaagaagaacaacaacaagaacaagagaaggttcagcgacgaacaaatccggtccttagaatcgatgttcgaatcagagtcgaggctcgagccaaggaagaagttggaggtagctaaagacttggggttacaaccaaggcaagtagctatatggttccagaacaaacgagctagacggaaatcgaagcaactcgaacgtgactacaccatgttacaatccaattatgataatttagcttccaagtacgagagcttaaagaaagaaaaacaagctttagcctttcagttgcagaagctgaaggatttggtaaagaagccaaaagaggaagatgatggtcaatgttgtggagaccaacaagttataacaatggagggagaagctatcaagtctgattcagaggagcagcacagtttttcaatggaaagatcagagcatggacttggggtattatcagatgatgatagtactataatgacaagctattttgaactagaacaagagcctactagttttataaccatggtggaactaggaccaagtggtgaagattggcatagttttgagactgatggtctttttgatcagtctagtaatgggtatcagtggtgggatttttggtcgtgaaacaaatcataaagcatggaggaaaaatggatgtaaataattttttcttttgtgtaagcatcccaatagggtgatgagggcaaagtagcttgtatgggagataggagagaggggtacaatttgattatgttatcacttgaattttagatgaaaactagagatgtatgaattcattatcactttggtcattgctgttgaactttcttttacactgaaattaatggcagctatgacaatgcagcttagcttta
//

by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]