2024-10-23 04:33:47, GGRNA.v2 : RefSeq release 226 (Sep, 2024)
LOCUS XM_015786573 518 bp mRNA linear PLN 10-JUL-2024 DEFINITION PREDICTED: Oryza sativa Japonica Group disease resistance protein PIK6-NP-like (LOC107281202), mRNA. ACCESSION XM_015786573 VERSION XM_015786573.3 DBLINK BioProject: PRJNA1123306 KEYWORDS RefSeq; corrected model. SOURCE Oryza sativa Japonica Group (Japanese rice) ORGANISM Oryza sativa Japonica Group Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_089040) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Jul 10, 2024 this sequence version replaced XM_015786573.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_034140825.1-RS_2024_06 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Best-placed RefSeq; Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 06/21/2024 ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## frameshifts :: corrected 1 indel ##RefSeq-Attributes-END## PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP 1-216 CP132240.1 10598046-10598261 217-343 CP132240.1 10601701-10601827 344-518 CP132240.1 10601829-10602003 FEATURES Location/Qualifiers source 1..518 /organism="Oryza sativa Japonica Group" /mol_type="mRNA" /db_xref="taxon:39947" /chromosome="6" gene 1..518 /gene="LOC107281202" /note="disease resistance protein PIK6-NP-like; The sequence of the model RefSeq transcript was modified relative to its source genomic sequence to represent the inferred CDS: deleted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 99% coverage of the annotated genomic feature by RNAseq alignments, including 11 samples with support for all annotated introns" /db_xref="GeneID:107281202" CDS 101..400 /gene="LOC107281202" /note="The sequence of the model RefSeq protein was modified relative to its source genomic sequence to represent the inferred CDS: deleted 1 base in 1 codon" /codon_start=1 /product="LOW QUALITY PROTEIN: disease resistance protein PIK6-NP-like" /protein_id="XP_015642059.2" /db_xref="GeneID:107281202" /translation="
MAETVLSMARSLVGSAISKATSAAAHEASLLLGVQKDIWYIKDELKTMQAFLRAAEVMKKKDELLKVWAEQIRDLSYDIEDALTNSRSILRAKICFIRW"
misc_feature 134..>349 /gene="LOC107281202" /note="Rx N-terminal domain; Region: Rx_N; pfam18052" /db_xref="CDD:436239" ORIGIN
cagagagctcactgcaaaagctaccatttctgattcgatctggtcgccaagttctctcccctgtgcagtctttggcgaaggtgaagaatccattcaatcgatggcggagacggtgctgagcatggcgaggtcgctggtgggcagtgccatcagcaaggccacctctgcggcggcccatgaggcgagcctcctactcggcgtccagaaggacatctggtatatcaaagatgagctgaaaacaatgcaagcgttcctacgagctgctgaagttatgaagaagaaagatgagctcttaaaggtttgggcagaacagatacgtgacttgtcctatgacattgaagatgccttgacgaattcaaggtccatattgagagccaaaatctgttttatcagatggtgaagctcagaaagcgccatctgatagctacccaaatccgtaacctcaaatcaagagttgaagaagtgagtagcagaaactcacgctacaatttagtcaaacctatttcatccagcaatga
//
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@meso_cacase at
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This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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