2024-04-26 01:40:12, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_015494741 3801 bp mRNA linear ROD 01-JUL-2022 DEFINITION PREDICTED: Marmota marmota marmota NRDE-2, necessary for RNA interference, domain containing (Nrde2), transcript variant X1, mRNA. ACCESSION XM_015494741 VERSION XM_015494741.2 DBLINK BioProject: PRJNA298354 KEYWORDS RefSeq. SOURCE Marmota marmota marmota (Alpine marmot) ORGANISM Marmota marmota marmota Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciuromorpha; Sciuridae; Xerinae; Marmotini; Marmota. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_025999900) annotated using gene prediction method: Gnomon, supported by mRNA evidence. Also see: Documentation of NCBI's Annotation Process On Jul 1, 2022 this sequence version replaced XM_015494741.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Marmota marmota marmota Annotation Release 101 Annotation Version :: 101 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 9.0 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3801 /organism="Marmota marmota marmota" /mol_type="mRNA" /sub_species="marmota" /db_xref="taxon:9994" /chromosome="Unknown" /sex="male" /tissue_type="Spleen" /collected_by="Dr Markus Ralser" gene 1..3801 /gene="Nrde2" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 8 mRNAs, 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 53 samples with support for all annotated introns" /db_xref="GeneID:107149851" CDS 94..3591 /gene="Nrde2" /codon_start=1 /product="nuclear exosome regulator NRDE2 isoform X1" /protein_id="XP_015350227.1" /db_xref="GeneID:107149851" /translation="
MALFPAFAGVSEAPDGGGSRKELDWLSNPSFCVGTVTTLSQQTEEATALVSEGSSPTRSPLKSEPSDESDASRKLTQIIRRKKKEKKKKRKHQHHKKTKRKHRQSSSSESEPDSDSGKDRSSRSIRSSQKQAEQPNQGNNTAADAGLRSVWLEDIQSLTGETFRTDKKPDPANWEYKSLYRGDIARYKRKGDSCLGINPKKQCISWEGASSTKKRVHRHVERYFTKKSVGLMSVDGVSVSSRTDPPSAEPVLFIPVKDLDDMASPVTTWLNPLGIYDRSTTQWLQGQGPSEAESKQPDSQLDRENALLKAKVEEFNRKVRENPRDIQLWMAFVAFQDEVMRSPGLYAMEEGEQEKRKKSLKLILEKKLAILERAIESNQSSIDLKLAKLKLCAEFWEPAALVKEWQKLVFLHPNNTVLWQKYLLFCQSQFSTFSISKIHSLYGKCLSTLSAVKDGSILSHPVLPGIEEAMFALLLQQCHFLRQAGHSEKAVSLFQAMVDFTFFKPDSVKDLPTKLQVEFFEPFWDSGEPRPGEKGARGWRAWMHQQERGGWVVINPDEDDDEPEEDDQEIKEKTLPRWQIWLAAERSRDQRHWRPWRPDKTKKQTEEDCEDPERQVLFDDIGQSLIRLSSQELQFQLIEAFLQFLGVPSGFVPPASCLYLAMDESSIFDSGLCDEKPLTFFNLSFSGISCVGCMDRLGSLRWTRGHNREGEEFIRNVFHLVMPLFSGKQKSQLCFSWLRYEIAKVIWCLHTKNKKRLKSQGKNCKKLAKNLLKEPENRNNFCLWKQYAHLEWLLGNIEDARKVFDTALSMVGSSELKDRELCELSLLYAELEVELSLDSAGATTARAVHILTRLTESSPYGPFTGQVLPTNVLKARKAYEHALQDCLGKSCVSDPTPADSLNCLSSLVKCFMLFQYLTVGIDAAVQIYEQLFAKLKGSVFSEGSGMEDGASSQNLTSVLEAITLMHTSLLRFHMKVNVYPLTPLREALSEALRLYPGNQVLWRSYVQIQNKSHSASKTRKFFDAMTRSAKPMEPWLFAIEAEKMRKRLVETVQRVGGREIHATIPETGLTHRIRALFENAVRSDHGSQCPLLWRMYLNFLASLGNKDRSKGVFYKALQNCPWAKVLYMDAVEYFPDELQEVLDLMTEKELRVRLPLEELELLLED"
misc_feature 577..867 /gene="Nrde2" /note="MTR4-interacting domain (MID) found in nuclear exosome regulator NRDE2 and similar proteins; Region: NRDE2_MID; cd22200" /db_xref="CDD:412062" misc_feature order(577..603,610..615,625..630,634..636,640..684, 691..699,703..711,733..741,751..756,760..765,772..792, 817..828,838..867) /gene="Nrde2" /note="MTR4 binding site [polypeptide binding]; other site" /db_xref="CDD:412062" misc_feature 1033..2031 /gene="Nrde2" /note="necessary for RNA interference; Region: NRDE-2; pfam08424" /db_xref="CDD:429988" polyA_site 3801 /gene="Nrde2" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN
cccagagtgcactgcgaccggtggagtcctccaatcggcgctcggcggcaggggccatttccgtagagaggaacggcggagcggcctgtgtccatggcgctgttcccagcctttgcgggcgttagtgaggcccccgatggtgggggttccaggaaagaattagactggctgagtaacccaagtttttgtgtcggaactgtaactaccctgagccaacaaactgaagaggccacagctcttgtttctgaagggtcatcaccaacaaggagtcctctgaaatcagagccttcagatgaaagtgatgctagcagaaagctcacacaaataatcaggagaaagaagaaggaaaaaaagaaaaaaaggaagcatcagcaccacaagaaaaccaagaggaagcaccggcagtcgagcagcagcgagtctgagccagattctgattcaggaaaggacagatcttccaggagcatcagaagcagccagaagcaagctgagcaacccaatcaaggaaataatactgctgctgatgctggacttcgctctgtctggcttgaggacattcagtctctgacaggagaaaccttcagaacagataagaaacccgatcctgcaaactgggagtataagtctctctaccgaggggatattgcaagatacaagaggaaaggagactcctgcctgggcattaacccgaagaagcagtgcatatcttgggaaggggcttcctcaacaaagaagcgtgtgcacaggcacgttgaacgctattttacgaagaagagcgtggggttgatgagcgttgatggcgtttctgttagcagtagaactgatcctccctctgcagagccggtcttgtttatccccgtgaaggacttggatgatatggcttctcctgttacaacctggttgaatcctttggggatttatgatcggtcaaccacacagtggttacaaggacagggtccttcagaagcagaatcaaagcagccagactcacagctggacagagagaatgctcttctcaaggcaaaggtggaggagtttaataggaaggttcgggagaaccctcgggatattcagctgtggatggcatttgttgcttttcaggatgaggtcatgaggagtcctggcctgtatgctatggaggaaggagaacaggagaagagaaagaagtccctgaagctcatcctggagaagaagctggccatcttggagcgggccattgagagcaaccagagcagcatcgatctcaagctcgccaagctgaagctctgtgcggagttctgggagcctgctgcgctggtcaaagagtggcagaaactggtctttttacatcccaataacacggtcctttggcagaaataccttttgttttgccagagccagtttagcactttttcaatatcaaaaattcacagtctttatggaaagtgcttgagcactctgtctgctgttaaggatggcagcatcttatctcaccctgtgctgcctggcatagaagaggccatgtttgcactccttcttcagcagtgccactttctgcggcaggctggccactcagagaaggccgtgtctttgttccaggccatggttgacttcactttcttcaaacctgacagtgtgaaagatctgcctaccaaattacaggtggaattctttgagcccttctgggacagtggagagccacggcctggggagaaaggagcgagaggctggcgagcgtggatgcaccagcaggagcggggtggctgggtggtcatcaatccagatgaggatgatgacgagccagaagaggatgaccaggagataaaagagaagactctgcccaggtggcagatctggcttgctgctgagcgttcccgagatcaaaggcactggcggccctggcgccctgataagaccaagaaacaaactgaggaagactgtgaggatcccgagagacaggtgttgtttgatgatattggacaatctctgatcaggctttccagccaagagcttcagttccagttgatcgaggcctttctgcagttcttgggtgtgccttctggctttgtccctccagcctcctgcctgtacctggccatggatgagagcagcatctttgatagtggactctgtgatgaaaagcccttgacttttttcaacctttcattttctggcattagctgtgttggctgcatggaccggttgggctctctccgctggaccaggggtcacaatcgagagggcgaggagttcattcgcaatgtcttccaccttgtgatgcctttgttttcgggcaagcaaaagtctcagctctgcttctcctggttacggtacgagattgcaaaggtcatttggtgtctgcacactaaaaacaagaagagattaaagtcacaggggaagaactgcaaaaaattagccaagaatctccttaaagagccagaaaaccgtaataatttttgcctctggaagcagtacgcacatctggagtggttgcttggcaacatagaggatgcccgaaaagtttttgatacagccctcagtatggtgggcagcagcgagctgaaggaccgtgaactttgtgaactcagtctcctctatgctgagctggaggtggagctgtcactggactcggcaggggccaccacagcccgagctgttcacatactaacccgactgacagagagcagtccctacgggcccttcactgggcaggtcttacccactaatgttttgaaagctcgaaaggcttacgagcatgcgctacaagactgtttgggtaagagctgtgtctctgatccaactcctgctgactccttgaactgcctgagtagcttggtcaaatgctttatgctgttccagtatttgaccgtagggattgatgctgccgtgcagatatatgaacagctatttgccaaactgaagggttctgttttctcagaaggctctggcatggaggacggtgccagctcccagaatctgaccagtgttcttgaagccatcacgctgatgcacacaagtctgctgaggttccacatgaaagttaatgtttaccctttgactccgctacgagaggcgctctcggaggctttgaggctgtatcccggcaaccaggttctttggaggtcatatgttcagattcagaataagtctcacagtgctagcaagaccagaaaattctttgatgcaatgaccaggtctgccaaacccatggagccgtggttatttgcaattgaagctgagaaaatgaggaaaagactggtagaaactgttcagagggtgggaggtagagagatccacgccaccatcccagagaccggcttaacacatcggatcagagccctgtttgagaacgcagtgcggagtgaccacggcagccagtgccccttactgtggaggatgtatttgaattttttggcttccttaggaaacaaagacagaagcaaaggtgtattctacaaagcacttcagaattgtccctgggcaaaggtgttgtacatggacgccgtggagtacttccctgacgagctgcaggaggtcctggatctgatgactgagaaggagctgcgcgtgcggctgcccctggaggagctggagctcctgctggaggactagggtgcaggcaggggagctggggagcacatgcgaggagcctctgttttggaagtgctcttcttggtcctgtgtgtcggggttgtcaggctttcccatcttacaaaggttttggatgtgtgaacgacacagagccgttgctttacatattacatatgtgaatgtgtgcacctgtgtacagaggcgaaaaatcaccagtgatgacgaaacgtg
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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