2024-04-27 08:26:53, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_015485274 7431 bp mRNA linear ROD 01-JUL-2022 DEFINITION PREDICTED: Marmota marmota marmota argonaute RISC component 1 (LOC107141957), transcript variant X2, mRNA. ACCESSION XM_015485274 VERSION XM_015485274.2 DBLINK BioProject: PRJNA298354 KEYWORDS RefSeq. SOURCE Marmota marmota marmota (Alpine marmot) ORGANISM Marmota marmota marmota Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciuromorpha; Sciuridae; Xerinae; Marmotini; Marmota. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_026000082) annotated using gene prediction method: Gnomon, supported by mRNA evidence. Also see: Documentation of NCBI's Annotation Process On Jul 1, 2022 this sequence version replaced XM_015485274.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Marmota marmota marmota Annotation Release 101 Annotation Version :: 101 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 9.0 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..7431 /organism="Marmota marmota marmota" /mol_type="mRNA" /sub_species="marmota" /db_xref="taxon:9994" /chromosome="Unknown" /sex="male" /tissue_type="Spleen" /collected_by="Dr Markus Ralser" gene 1..7431 /gene="LOC107141957" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 mRNAs, 27 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 49 samples with support for all annotated introns" /db_xref="GeneID:107141957" CDS 211..2784 /gene="LOC107141957" /codon_start=1 /product="protein argonaute-1 isoform X2" /protein_id="XP_015340760.1" /db_xref="GeneID:107141957" /translation="
MEAGPSGAAAGTYLPPLQQVFQAPRRPGIGTVGKPIKLLANYFEVDIPKIDVYHYEVDIKPDKCPRRVNREVVEYMVQHFKPQIFGDRKPVYDGKKNIYTVTALPIGNERVDFEVTIPGEGKDRIFKVSIKWLAIVSWRMLHEALVSGQIPVPLESVQALDVAMRHLASMRYTPVGRSFFSPPEGYYHPLGGGREVWFGFHQSVRPAMWKMMLNIDVSATAFYKAQPVIEFMCEVLDIRNIDEQPKPLTDSQRVRFTKEIKGLKVEVTHCGQMKRKYRVCNVTRRPASHQTFPLQLESGQTVECTVAQYFKQKYNLQLKYPHLPCLQVGQEQKHTYLPLEVCNIVAGQRCIKKLTDNQTSTMIKATARSAPDRQEEISRLMKNASYNLDPYIQEFGIKVKDDMTEVTGRVLPAPILQYGGRNRAIATPNQGVWDMRGKQFYNGIEIKVWAIACFAPQKQCREEVLKNFTDQLRKISKDAGMPIQGQPCFCKYAQGADSVEPMFRHLKNTYSGLQLIIVILPGKTPVYAEVKRVGDTLLGMATQCVQVKNVVKTSPQTLSNLCLKINVKLGGINNILVPHQRSAVFQQPVIFLGADVTHPPAGDGKKPSITAVVGSMDAHPSRYCATVRVQRPRQEIIEDLSYMVRELLIQFYKSTRFKPTRIIFYRDGVPEGQLPQILHYELLAIRDACIKLEKDYQPGITYIVVQKRHHTRLFCADKNERIGKSGNIPAGTTVDTNITHPFEFDFYLCSHAGIQGTSRPSHYYVLWDDNRFTADELQILTYQLCHTYVRCTRSVSIPAPAYYARLVAFRARYHLVDKEHDSGEGSHISGQSNGRDPQALAKAVQVHQDTLRTMYFA"
misc_feature 310..702 /gene="LOC107141957" /note="N-terminal domain of argonaute; Region: ArgoN; pfam16486" /db_xref="CDD:435368" misc_feature 730..882 /gene="LOC107141957" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:430160" misc_feature 883..1245 /gene="LOC107141957" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212" misc_feature order(1039..1041,1084..1086,1126..1128,1138..1140, 1192..1194,1213..1215,1219..1221) /gene="LOC107141957" /note="nucleic acid-binding interface [nucleotide binding]; other site" /db_xref="CDD:239212" misc_feature 1378..2655 /gene="LOC107141957" /note="PIWI domain, Argonaute-like subfamily. Argonaute is the central component of the RNA-induced silencing complex (RISC) and related complexes. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the...; Region: Piwi_ago-like; cd04657" /db_xref="CDD:240015" misc_feature order(1789..1791,1801..1803,1837..1848,1855..1857, 1879..1881,1888..1890,1900..1902,1912..1914) /gene="LOC107141957" /note="5' RNA guide strand anchoring site [active]" /db_xref="CDD:240015" misc_feature order(1993..1995,1999..2001,2209..2211,2623..2625) /gene="LOC107141957" /note="active site" /db_xref="CDD:240015" polyA_site 7431 /gene="LOC107141957" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN
cagctggccgggcgctcgcagggggagctgctgcaggctccgcggcggcggcggcaacggaggctgcgggggcggcggcgcgagcggccgggcttgggggggtgccgagcccggcccgggagcccgagcagcgagagcgcgggatacctaggcccctcacgttggagtccacagtctccgggccgcctgacctccgcacgggtatatgggatggaagcgggaccctcgggagcagctgcgggcacctacctgccccccctgcagcaggtattccaggcacctcgacggcctggcattggcactgtggggaaaccaatcaagctcttggccaattactttgaggtggacattcctaagatcgacgtctaccactacgaggtggacatcaagccggataagtgtcctcgcagagttaatcgggaagtggtggaatacatggtccagcatttcaagcctcagatctttggtgatcgcaagcccgtgtatgatggaaagaagaacatttacactgtcacagcactgcctattggcaacgaacgggtcgactttgaggtgacaatccctggggaagggaaggatcgaatttttaaggtctccatcaagtggctagccattgtgagctggcgcatgctgcatgaggccctggtcagtggccagatccctgttcccctggagtcggtgcaagccttggatgtggccatgaggcacctggcatccatgaggtacacccctgtgggccgctccttcttctcaccgcctgagggctactaccacccgctggggggtgggcgcgaggtctggttcggctttcaccagtctgtgcgccctgccatgtggaagatgatgctcaacattgatgtctcagccactgccttctacaaggcgcagccagtgattgagttcatgtgtgaggtgttggacatcaggaacatagacgagcagcccaagcccctcacggactctcagcgtgttcgctttaccaaggaaattaagggcctgaaggtggaagtgacccattgtggacagatgaagaggaaataccgtgtgtgtaatgttacccgccgccctgctagccatcagacgtttcccttgcagctggaaagtggacagactgtagagtgcacagtggcacaatatttcaagcagaaatataaccttcagctcaagtatccccacctaccttgcctgcaagttggccaagaacaaaagcatacctatttgcccctagaggtctgtaacattgtggctgggcagcgctgcataaagaagctgactgacaaccagacttcaaccatgataaaggctacagctaggtcagccccagacagacaggaggagataagtcgcctgatgaagaatgccagctacaacctagatccctacatccaggaatttggaatcaaagtgaaagatgacatgacggaggtgacggggcgagtgctgccggcgcccatcttgcagtacggcggccggaaccgggccattgccacacccaatcaaggtgtttgggacatgcgggggaaacagttctacaatgggattgagatcaaagtctgggccatcgcctgcttcgcaccccaaaaacagtgtcgagaagaggtgctcaagaacttcacagaccagctgcggaagatttccaaggatgcagggatgcccatccagggtcagccttgtttctgcaaatacgcacaaggggctgacagcgtggagcccatgttccggcatctcaagaacacctactcagggctgcagctcattatcgtcatcctgccagggaagacgccagtgtatgctgaggtgaaacgagttggagatactcttttgggaatggcaacacagtgtgtgcaggtgaagaacgtggtcaagacctcacctcagactctatccaacctctgcctcaagatcaatgtcaaacttggtggcattaacaacatcctagtcccacaccagcgctctgctgtctttcaacagccagtgatattcctaggagcagatgttacacaccccccagcaggggatgggaaaaaaccttctatcacagcagtagtaggcagtatggatgcccaccccagccgatactgtgctactgtgcgggtacagcgaccacggcaggagatcattgaagacttgtcctacatggtgcgtgagctgctcatccaattctacaagtccacccgctttaagccgacgcgcatcatcttctatcgagatggggtcccagaaggccagcttccccagatcctccactatgagctactggccattcgcgatgcctgcatcaaactggaaaaggactaccagcctgggatcacttatattgtggtgcagaaacgccatcacacccgccttttttgtgctgacaagaatgagcgaattgggaagagtggtaacatcccagctgggaccactgtggacaccaacatcacccacccatttgagtttgacttctatctgtgcagccatgcaggcatccagggtaccagccgaccatcccattactatgtcctttgggatgacaaccgtttcacagcggatgagcttcagatattgacataccagctgtgccacacttatgtacgatgcacacgttccgtctctatcccagcaccagcctactatgcccgcctagtggctttccgggcacgataccacctggtggacaaggagcatgacagtggagaggggagccacatatcggggcagagcaatgggcgggacccccaggccctggccaaagccgtgcaggttcaccaggatactctgcgcaccatgtacttcgcttgaaggcagaacgctgttacctcactggatagaagaaagctttccaagccccaggagctgtgccgcccaaatccagaggaagcaaggaggagggaggtggggtagggaggagtgtaggaggccttgtttctttctacagagggggtgtaacggtggggaatagggccagcaagacagaccaccagccagaatctctgatattaacctcatgctccccacccctcacctcatctcgtcacatctggccctgaccccactggaccaagaggggcagcactggtgcccaccatacacacaggtgtctcatgtgactcacagtgctaactaaagactcatgcttgacagcttggtaaggtcagctctgcagccctgcggacaaaagctggtaggtttgggtttgctactttagttggaaaagtaaagggcttgagaaagtgggtgggaggagggaaggatttttttttttaggagccttaatcaaaaaaggtctagatttgtctaaaaagaaaaatgaaaccagacccagatcaatattttaggatactagatgttttcatgggttcagaatccagtttgtaggaagatttttaatgctaatagttttggttgctcctccccagctgccacccccacccaccacccttattcctctccacattttctaccccaccctacgcctccttcctgacagtcatccagccctcctagcaacacttaaggcactatggcacttagctctgaagtgacacgaccctgtcttccttccgcctgctggtgggtaaccagtgccttccctgtaatggtaatgctgcagaactgcaaccttttgtacctttctttgggggatggggtgggggtgggagaggaggtaggtggggaagaaatatcctgaacacaacaagcctccagccagaatgccagctattttgcatttaaaggaattgacttccacattcattgagctttggaaaagattacaacctcaagatggttaaaatccattgacatttgcactttcagacatgacaagtctcggagctgctgagatgactggcccttggcctttccacttttgcctcttttttccccatacctgccaccctgccctggtctagagttactttcatagcatttctcactcttggcttcttttttttccccctgatggtcaagtttcttgtgtttcaatatttcttaaatggggtgtcttataacagaagatccttaggtttaaaataagaaaaagaaaactaaatgttatttttataccacaacttgagtctattgccaaaatctggaaatcgctcccatgcctgatgagtttacatcccggaaacattgagccatcagaaggaactgtgtacctgacttgtcttctggcctggctaggtaaggggtggtggtctccccaaggtggagctcgggctctatccttcctctgtgcagaaaatacctttttcttgctgcaggctcccttctctgcactgtcctgcactctttcctgcaaatgcatcttcccttcctttggactggactgtcctttgactcatcccagattctagcatgtcctgtggacaggctgggaattttgctgctccctaatgcttctgtttacacaaaggaatttttcctggtttcccactagggcatgtgagtgggtggcatggtttttcctttttctttttctttctctttctttctttttttttttttttgtcttgagatatggggtggggtttggctctcttgcaagactggaaacgaagggggttcttatgctgaccttgaagcaaggtcccctctttccttggctgctgccccccccgtccgtccccccccccgtgtcctgaggagtttcaacttcagtggggaaattcctctttttgaagagcttgggcttgggtatccccctctggttatgaagccatggtaccttagatctagcccaggcttggagaccagctgggagaaggagggtctgaatcctggtctgtggagttagagctacccttttctttccaaggcagcccttgtgcagacccagatttgctatgcaaaacaatttatcccaggttctgttctggttggctacattgttcaacaacttcataaaacgtagcacaaacattcattatggagaaagcaacaggactgttgagtaactcctcctgtatttttttcctgctggctacagtatggggtgccccatgggcacaagcccagctgaaaaacagaatggagggctctgggaggaggcagcttactggagagcctacattccttacacaagtgcctaaagagagtgatgccaacactccatctgccctgtccatcgccttcacatacagtctacttcatgttctgtcaccctttagggagggagctctcctaggacagtgggctctgcatgttctctatttgggtacattttggggctgtgataagggcactattcctggagggtctagtcattcaccagcatttgcaaatgtccatagggaacaggtggcaggccctacttgcaggagcaagtttgtactctctccttctctatctctgcctcactctctccagttgtgttttaagctggggcttgaaaggcatatttggtcctttggcattgcacatgcctttgaagaaataaaagcaagagaagcagtttgggcaatgataagaaaattacttcttgcctaatgtaatggaaaaatatgtttgagacttgaaaaatacccttgacaatgttgattattcttgttcgaagggtgttacacgcacagtaagaagtggtgttgcaagcaagccaaagcttggtttaagtagtgcttcttaccaggctccaaggaagcactgagagggccctggttagactcatcctcttagacaggcctctaactccctttgttccactgttttgcctgccttttcctattctcactttccttggcttcctcttccttttttctgttcactcagcttgcttcctggccagcctgcctgcctgcctgcctatgtgatgatgaattctctgcatggctgcagtgatcccactgttagttgacaaagttaggcttatccccttgtctgcagaagaccaagaacctgctccccacacccagtggtattaaccctgggttggactatcctcaagcttacactagggcagagcagtaggtctgcccaactggcatgaaatcaggagggtttctgtcatttccatatttatccactccttggatctggtttctctcatattttctggttctgcttccttttctctttacctgagacttccctttgttgaggatattccagggttgagctatttgggtattcagggttggagggttagaagatagatacagaggaagaagggagtgtttggaagagaatggagagagtttggattaaagatgagaaaggaaagcagtgctctttgtccagtccaacacgaccctttggtgtcgaggtgctactgttgccttctggggttaaacctggggctattgttgctgggaacacttagaataaggctaaagagggtacctagaagtttgaaacctccctaaaaagctcctagtccccacctgtgagatagctcctctgtggtgtcctctttggctgagaagcagtgtttttggatagtttcttttcttttctttttttttttttgtccagaatgatgtgaataagactgcacacatgataaacagccaagaagacactgttttcttaccttgctgatgtggtatctgcaaggctagacctggcattctgtgtgacaaaaaaggatggaagctccttccttttcagggtagagaagtcatctcaaactagccaaaaggcagttttggaaacaatgttggggaaagtaatttttatttatttactgggtttgggcagatccaggatggtagctgggaagcctttcttcttcaagtctgatcatggcagggatatgcagggcactcttccctctaggccttctaagcagactggggaggagggaattctctggttttctctttccctccacttactaggacttgcctcctcccttggccgggagagaggctgggttggtgctctccccttactctactcctgacgtagaacctctggctgctgtttgggagcccaagaaagggagtggaaggaatgggctcaaaacaaaacaatgatgtggggaaggcagatttcctactttaaaaaggaaaatgggaaactctccaagaattgtgcaagtaaagacaatgtgtccaaatgcactgagtcccctggtgtagtagcaataaggaaaaatgaaatgactttcctgtacacacagtccaacctgattggtgtgtgatgttgcacttagcagccatgtggtgggcatgtgtgactactctgggtttcactttagtttctaaactttttatccctctcaagtccagcatggatggggaagtgtccctggagccccacagctgtgtacttgtttgcgtttgtttccctttgagatttgtgtttgtgtcctgctttgagctgtaccttgtccagtccattgtgaaattatcccagcagctgtattgtacagttccttcagaagcaagcaacagcagcagcacaattctgtgttttataaagacaacagtggcttctatttctaaa
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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