LOCUS       XM_010350579            3806 bp    mRNA    linear   PRI 09-JUN-2025
DEFINITION  PREDICTED: Saimiri boliviensis NRDE-2, necessary for RNA
            interference, domain containing (NRDE2), transcript variant X2,
            mRNA.
ACCESSION   XM_010350579
VERSION     XM_010350579.3
DBLINK      BioProject: PRJNA1262523
KEYWORDS    RefSeq.
SOURCE      Saimiri boliviensis (Bolivian squirrel monkey)
  ORGANISM  Saimiri boliviensis
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
            Platyrrhini; Cebidae; Saimiriinae; Saimiri.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_133450) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Jun 9, 2025 this sequence version replaced XM_010350579.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_048565385.1-RS_2025_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.4
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/05/2025
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3806
                     /organism="Saimiri boliviensis"
                     /mol_type="mRNA"
                     /isolate="mSaiBol1"
                     /db_xref="taxon:27679"
                     /chromosome="2"
                     /sex="male"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="USA: Bastrop, Texas"
                     /lat_lon="30.209605 N 97.301861 W"
                     /collection_date="2020-11-16"
                     /collected_by="University of North Carolina, Chapel Hill,
                     Gregory K. Wilkerson"
     gene            1..3806
                     /gene="NRDE2"
                     /note="NRDE-2, necessary for RNA interference, domain
                     containing; Derived by automated computational analysis
                     using gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 6 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 8 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:101050171"
     CDS             728..3529
                     /gene="NRDE2"
                     /codon_start=1
                     /product="nuclear exosome regulator NRDE2 isoform X2"
                     /protein_id="XP_010348881.1"
                     /db_xref="GeneID:101050171"
                     /translation="

MNIDGVAISSKTEPPSSDPASFIPVKDLEDAAPVTTWLNPLGIYDQSTTQWLQGQGPPEQESKQPDTQPDSESAALKARVEEFNRRVRENPRDTQLWMAFVAFQDEVMKSPGLYAIEEGEQEKRKRSLKLILEKKLAILERAIESNQSSVDLKLAKLKLCTEFWEPSTLVKEWQKLIFLHPNNTVLWQKYLLFCQSQFSTFSISKIHSLYGKCLSTLSAVKDGSILSHPALPGTEEAMFALFLQHCHFLRQAGHSEKAISLFQAMVDFTFFKPDSLKDMPTKGQVEFFEPFWDSGEPRAGEKGARGWKAWMHQQERGGWVVINPDEDDDEPEEDDQEIKDKTLPRWQIWLAAERSRDQRHWRPWRPDKTKKQTEEDCEDPERQVLFDDIGQSLIRLSSQDLQFQLVEAFLQFLGVPSGFTLPASCLYLAMDENSIFDNGLYDEKPLTFFNPLFSGASSVGRMDRLGCPRWTRGQNREGEEFIRNVFHLVMPLFSGKEKSQLCFSWLQYEIGKVMWCLHTKNKKRLKSQGKNCKKLAKNLLKEPENRNSFCLWKQYAHLEWLLGNTEDARKVFDTALGTAGSQGLKDSELCELSLLYAELEVELLPEVRGAASARAVHILTKLTESSPYGPYTGEVLAVHILKARKAYEHALQDCLGDSCVSDPAPTDSCTRLISLAKCFMLFQYLTIGIGAAVRIYEQVFAKLHGSVFPEGSGEGNSASSQSWSSVLEAITLMHASLLRFHMKVSVYPLAPLREALSQALKLYPGNQVLWRSYVQIQNKSHSASKTRRFFDTITRSAKLLEPWLFAIEAEKMRKRLVETVQRLDGREIHATIPETGLTHRIQALFENAMRSDGGSQCPLLWRMYLNFLVSLGNKERSKGVFYKALQNCPWAKVLYLDAVEYFPEEMQEVLDLMTEKELRVRLPLEELELLLED"

     misc_feature    971..1969
                     /gene="NRDE2"
                     /note="necessary for RNA interference; Region: NRDE-2;
                     pfam08424"
                     /db_xref="CDD:462472"
     polyA_site      3806
                     /gene="NRDE2"
                     /experiment="COORDINATES: polyA evidence [ECO:0006239]"
ORIGIN      

cagggttctccgcggcgctgcaaagccttctgggaagggctcaggacctcgtccgaggtctggggcccaaaggactcttctgggccgaggttgtagagagttagactggctgagcaacccaagcttttgtgtcggatccataacgtcccggagccaacaaactgaagcagccacagcccatgtttctgaagggtcaccactgtcaaggagtcctctgaaatcagagccttcagatgaaagtgacactaacaaaaagttcaaacaaacaagcagaaaaaagaagaaagagaaaaagaaaagaaggaagcaccagcatcataagaaaacaaagaggaaacatggacagtcgagtagcagcaggtctgagacagacactgattctgaaaaggacaaaccttccagaaccatcggaggcagtaaaaaggaatctgagaaaccgaatcaaggaaataatgctgcagctgatactggacatcgctttgtttggcttgaggacattcaggctgtgacaggagaaaccttcagaacagataagaaaccagatcctgcaaactgggagtacaagtctctctaccgaggggatatagcaagatacaagaggaaaggagactcctgccttggcattaatcctgcgaagcaacgcatatcttgggaagggacttccacagagaagaagcattcacacaagcaggttgaacgctattttactaagaagagtgtggggttaatgaacatcgatggagttgccattagcagtaaaactgaacctccatcatctgaccccgcctcctttataccagtgaaggacttggaagatgcagctcctgttacaacctggttgaatcctctggggatttatgatcagtcaactacacagtggttacaaggacagggtcctccagagcaggaatccaagcagccagacacacagccagacagcgagagtgcggctctcaaggccagggtggaggagttcaacaggagggtgcgggagaatccgcgggatacgcagctgtggatggcatttgttgcttttcaggacgaggtcatgaaaagtcctggcctgtatgccatcgaggaaggagagcaggaaaagcgaaagaggtccctgaagctcattctggagaagaagctggccattctggagcgggccattgagagcaaccagagcagtgtggatctgaaactggccaagctgaagctctgcacagagttctgggagccctccactctggtcaaagagtggcagaaactgatatttttacatcccaataatacggtcctttggcagaaataccttttgttttgccagagccagtttagtaccttttcaatatcaaaaattcacagtctttatggaaaatgcttgagcaccttgtctgctgtgaaggatggcagcatcttatctcaccctgcgttgcctggcacagaagaggccatgtttgccctctttcttcagcactgccactttctgcggcaggccggccactctgagaaggccatctcattgttccaggccatggtggacttcacattcttcaaacccgacagcctgaaagatatgcctaccaaaggacaggtagaattctttgagcccttttgggacagtggagagccccgggctggggagaagggagcccgaggctggaaggcgtggatgcaccagcaggagcgaggtggctgggtggtcatcaacccagacgaggatgacgatgaaccagaagaggacgatcaggaaataaaagataagactcttcccaggtggcagatctggcttgctgctgagcgttcccgagaccagaggcactggcggccctggcgccctgataagaccaagaagcaaaccgaggaagactgtgaggatcctgagagacaggtgttgtttgatgatattgggcagtctttgatcagactttcaagccaagatctgcagttccagctggtggaggcctttctgcagttcttgggtgtgccttctggcttcactcttccagcctcctgtctctatctggccatggatgagaacagcatctttgacaatggactttatgatgaaaagcccttgacttttttcaaccctttgttttccggggccagcagtgtgggccgcatggaccggctgggctgtcctcgctggaccaggggtcagaaccgagagggtgaggagttcatccgcaacgtcttccacctggtcatgcctttgttttcaggcaaagagaagtctcagctctgcttctcctggttacagtatgagattggaaaggtcatgtggtgtctgcacactaaaaacaagaagagattaaagtcacaagggaagaactgcaaaaaactcgccaagaatctccttaaggagccagaaaaccgcaacagcttttgcctctggaagcagtatgcccatctggagtggttgcttggcaacacagaggatgctaggaaagtttttgacacagcactcggcacggcaggaagccaaggactgaaggactctgaactctgtgagctcagtctgctctatgccgagctggaggtggagctgttgccggaagtgagaggggccgcctccgctcgagctgttcacatattaaccaagctgaccgagagcagcccctacgggccctatactggagaggtgttggctgttcacattttgaaagcacgaaaggcttacgagcacgcgctgcaggactgtttgggtgacagctgtgtctccgatccagctcccaccgattcctgtacccgcctaattagcttggccaaatgcttcatgctcttccagtatttgaccatcgggattggtgctgctgtacggatatacgaacaggtatttgccaaactgcacggttctgttttcccagaaggctctggcgaggggaacagtgccagctcccagagttggagcagtgttctcgaagccatcacactgatgcatgcaagcctgctgagattccacatgaaagtgagtgtttacccgctggcccctctgcgagaggcactctcacaggctttaaagctgtatccaggcaaccaggttctttggaggtcctatgtccagattcagaataagtcccacagcgccagcaagaccaggagattttttgacacaatcaccaggtctgctaaactcttggaaccttggctgtttgcaattgaagctgagaaaatgaggaaaagactagtggaaactgttcagaggttagacggtcgagagatccacgccacgattcctgagaccggcttaacacatcggatccaagccctgtttgaaaacgccatgcgcagcgacggtggcagccagtgccccttgctgtggaggatgtatttgaactttttggtttccttaggaaataaagaaagaagcaaaggtgtattctacaaagcacttcagaattgtccttgggcaaaggtgttgtacctggacgctgtggagtacttccccgaggagatgcaggaggtcctggatctgatgaccgagaaggagctccgggtgcgcctgccactggaggagctggagctgctgctggaggattagagagccgcggggaacggaccgtaactgtgaggccaagtcgcccaccctgcagagccaggaggcacgaggggagaatgtgtgcgttggagatctcagcttttgaaatgttctttctcaatattaatgtgtctgggctgccagcctctcacatctggcacactttttgggtgtgaagatgacacaaaagctgtttatatgttatatatttgcatgtgtatatatatgtacatagccagggagtcatgccaagtggtcattaaaccagtgatggttgagg

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