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2024-03-29 19:24:31, GGRNA.v2 : RefSeq release 222 (Jan, 2024)

LOCUS       XM_006906988            1880 bp    mRNA    linear   MAM 07-MAY-2018
DEFINITION  PREDICTED: Pteropus alecto vimentin (VIM), mRNA.
ACCESSION   XM_006906988
VERSION     XM_006906988.3
DBLINK      BioProject: PRJNA232518
KEYWORDS    RefSeq.
SOURCE      Pteropus alecto (black flying fox)
  ORGANISM  Pteropus alecto
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Chiroptera; Megachiroptera;
            Pteropodidae; Pteropodinae; Pteropus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_006431956.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On May 7, 2018 this sequence version replaced XM_006906988.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Pteropus alecto Annotation Release
                                           102
            Annotation Version          :: 102
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.0
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1880
                     /organism="Pteropus alecto"
                     /mol_type="mRNA"
                     /db_xref="taxon:9402"
                     /chromosome="Unknown"
                     /sex="male"
                     /tissue_type="kidney"
                     /country="Australia: Anglican Church Grammar School, East
                     Brisbane"
                     /collection_date="Nov-2008"
     gene            1..1880
                     /gene="VIM"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 14 mRNAs, 18 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 24 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:102879983"
     CDS             162..1562
                     /gene="VIM"
                     /codon_start=1
                     /product="vimentin"
                     /protein_id="XP_006907050.1"
                     /db_xref="GeneID:102879983"
                     /translation="
MSTRSVSSSSYRRMFGGPGTASRPSSSRSYVTSSTRTYSLDGALRPSTGRSLYASSPGGVYAKRSSAVRLWSGAPRVRTLQDSVDFSLADAINTEFKNTRTNEKVELQELNDRFANYIDKVRFLEQQNKILLAELEQLKGQGKSRLGDLYEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQREEAESTLQSFRQDVDGASLARLNLERKVESLQEEIAFLKKLHDEEIQELQAQIQEQHVQIDVDVSKPDLTAALRDVRQQYENVAAKNLQEAEEWYKSKFADLSEAANRNNDALRQAKQESNEYRRQVQSLTCEVDALKGSNESLERQMREMEENFAMEAANYQDTIGRLQDEIQNMKEEMARHLREYQDLLNVKMALDIEIATYRKLLEGEESRIALPLPTFSSLNLRETNLDSLPLVDTHSKRTLLIKTVETRDGQVINETSQHHDDLE"
     misc_feature    201..464
                     /gene="VIM"
                     /note="Intermediate filament head (DNA binding) region;
                     Region: Filament_head; pfam04732"
                     /db_xref="CDD:428095"
     misc_feature    465..1391
                     /gene="VIM"
                     /note="Intermediate filament protein; Region: Filament;
                     pfam00038"
                     /db_xref="CDD:425436"
ORIGIN      
ttggcagggtcccgtcctctgcaactcttgctccggggtccccgcgccagagacgcagcagcgctcccaccgcccacacccaccgcgccctcgctcgcctctccgccgaaagccagtccgcgccgccgcagctgcccagcccgccaccaccctccgcagtcatgtccaccaggtccgtatcctcgtcctcctaccgtaggatgttcggcggcccaggcaccgccagccggccgagctccagccggagctatgtgacctcgtccacccgcacttacagcctggacggcgcgctgcgccccagcacgggccgcagcttgtacgcctcgtcgcccggcggcgtgtatgccaagcgctcctcggctgtgcgcctgtggagcggtgccccccgcgtgcggacgctgcaggactcggtagacttctcgctggccgacgccatcaacaccgagttcaagaacacccgtaccaacgagaaggtggagctgcaggagctgaatgaccgcttcgccaactacatcgacaaggtgcgcttcctggagcagcagaacaagatcctgctggccgagctcgagcaactcaagggccagggcaagtcgcgcctgggggacctttacgaggaggagatgcgggagctgcgccggcaggtggaccagctcaccaacgacaaggcccgcgtggaggtggagcgcgacaatctggccgaggacatcatgaggctccgggagaagttgcaggaggagatgcttcagagagaggaagccgagagcaccctgcagtccttcagacaggatgttgatggtgcttctttggcacgtcttaaccttgagcgtaaagtggaatccttgcaggaagagattgcctttttgaagaaactccatgacgaggaaatccaggagctgcaggcccagattcaggaacagcatgtccagatcgatgtggatgtttctaagcctgacctcacggctgccctgcgtgacgtacgtcagcagtatgaaaatgtggctgccaagaaccttcaggaggctgaggaatggtacaagtccaagtttgctgacctctccgaggctgctaaccggaataatgatgccctgcgccaggcgaaacaggagtcaaatgagtaccggagacaggtgcagtccctcacctgtgaagtggacgcgctgaaaggatctaatgagtctctggaacgccagatgcgtgaaatggaagagaactttgctatggaagctgctaactaccaagacactattggccgcctgcaggatgagattcagaacatgaaggaagaaatggctcgtcaccttcgtgaataccaagacctgctgaatgttaagatggctcttgacattgagattgccacctacaggaagctgctggaaggcgaggagagcaggattgctctgcctcttccaaccttttcttccctgaacctgagggaaaccaatctggattcgctccctctggttgacacccactcaaaaaggacacttctgattaagacggttgaaactagagatggacaggttatcaatgaaacttctcagcatcacgatgacctggagtgaaaattgcacagagttggtgcagcaatattattaccagcaacaataaaaaagaaattcatttcttaaagaaacagcttttaagtgcctttctgcagtttttcaggagcgcaagatagatttgaaatagaaataagctctagttcttaagaaccaacactcctaaaagatttagaaaaaagtttacaacgtaatctagtttatgaagaagtcttgtgctagaatactttttaaaaagtatttttgaataccattcaaactgcttttttccaacaagtatctgaccaatgtgtctctgcttcaataaatctttgaaatctg
//

by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]