2024-04-20 18:41:12, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_006732551 4422 bp mRNA linear MAM 30-SEP-2019 DEFINITION PREDICTED: Leptonychotes weddellii argonaute RISC component 4 (AGO4), transcript variant X2, mRNA. ACCESSION XM_006732551 VERSION XM_006732551.1 DBLINK BioProject: PRJNA232772 KEYWORDS RefSeq. SOURCE Leptonychotes weddellii (Weddell seal) ORGANISM Leptonychotes weddellii Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Pinnipedia; Phocidae; Leptonychotes. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_006383411.1) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Leptonychotes weddellii Annotation Release 101 Annotation Version :: 101 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.2 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..4422 /organism="Leptonychotes weddellii" /mol_type="mRNA" /isolate="WS11-02" /db_xref="taxon:9713" /chromosome="Unknown" /sex="female" /tissue_type="liver" gene 1..4422 /gene="AGO4" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 14 mRNAs, 2 ESTs, 14 Proteins, and 99% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns" /db_xref="GeneID:102748534" CDS 2..2587 /gene="AGO4" /codon_start=1 /product="protein argonaute-4 isoform X2" /protein_id="XP_006732614.1" /db_xref="GeneID:102748534" /translation="
MEALGPGPPTSLFQPPRRPGLGTVGKPIRLLANHFQVQIPKIDVYHYDVDIKPEKRPRRVNREVVDTMVRHFKMQIFGDRQPGYDGKRNMYTAHPLPIGRDRVDMEVTLPGEGKDQTFKVSVQWVSVVSLQLLLEALAGHLNEVPDDSVQALDVITRHLPSMRYTPVGRSFFSPPEGYYHPLGGGREVWFGFHQSVRPAMWNMMLNIDVSATAFYRAQPIIEFMCEVLDIQNINEQTKPLTDSQRVKFTKEIRGLKVEVTHCGQMKRKYRVCNVTRRPASHQTFPLQLENGQAMECTVAQYFKQKYSLQLKYPHLPCLQVGQEQKHTYLPLEVCNIVAGQRCIKKLTDNQTSTMIKATARSAPDRQEEISRLVKSNSMVGGPDPYLKEFGIVVHSEMTELTGRVLPAPMLQYGGRNKTVATPNQGVWDMRGKQFYAGIEIKVWAVACFAPQKQCREDLLKSFTDQLRKISKDAGMPIQGQPCFCKYAQGADSVEPMFKHLKMTYVGLQLIVVILPGKTPVYAEVKRVGDTLLGMATQCVQVKNVVKTSPQTLSNLCLKINAKLGGINNVLVPHQRPSVFQQPVIFLGADVTHPPAGDGKKPSIAAVVGSMDGHPSRYCATVRVQTSRQEISQELLYSQEVIQDLTNMVRELLIQFYKSTRFKPTRIIYYRGGVSEGQMKQVAWPELIAIRKACISLEEDYRPGITYIVVQKRHHTRLFCADKTERVGKSGNVPAGTTVDSTITHPSEFDFYLCSHAGIQGTSRPSHYQVLWDDNCFTADELQLLTYQLCHTYVRCTRSVSIPAPAYYARLVAFRARYHLVDKDHDSAEGSHVSGQSNGRDPQALAKAVQIHHDTQHTMYFA"
misc_feature 77..466 /gene="AGO4" /note="N-terminal domain of argonaute; Region: ArgoN; pfam16486" /db_xref="CDD:435368" misc_feature 497..649 /gene="AGO4" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:430160" misc_feature 650..1012 /gene="AGO4" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212" misc_feature order(806..808,851..853,893..895,905..907,959..961, 980..982,986..988) /gene="AGO4" /note="nucleic acid-binding interface [nucleotide binding]; other site" /db_xref="CDD:239212" misc_feature 1151..2458 /gene="AGO4" /note="PIWI domain, Argonaute-like subfamily. Argonaute is the central component of the RNA-induced silencing complex (RISC) and related complexes. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the...; Region: Piwi_ago-like; cd04657" /db_xref="CDD:240015" misc_feature order(1562..1564,1574..1576,1610..1621,1628..1630, 1652..1654,1661..1663,1673..1675,1685..1687) /gene="AGO4" /note="5' RNA guide strand anchoring site [active]" /db_xref="CDD:240015" misc_feature order(1766..1768,1772..1774,2012..2014,2426..2428) /gene="AGO4" /note="active site" /db_xref="CDD:240015" ORIGIN
catggaggcgctgggacccggacctccaaccagcctgtttcagccacctcgtcgtcctggccttggaactgttggaaaaccaattcgactgttagccaatcattttcaggttcagattcctaaaatagatgtgtatcactatgatgtggatattaaaccagaaaagcggcctcggagagtcaacagagaggtagtagatacaatggtgcggcacttcaagatgcaaatatttggtgaccggcagcctggctatgatggcaaaagaaacatgtacacagcacatccactgccaattggacgggatagggttgatatggaagtgacccttccaggtgagggtaaagaccaaaccttcaaagtgtctgttcagtgggtatcagttgtgagccttcagttgcttttagaagctttggctgggcacttgaatgaagtcccagatgactcagtacaagcacttgatgtaatcacaagacaccttccctccatgaggtacactccggtgggtcgttcttttttctcacctcctgaaggttactaccaccctctgggagggggcagagaggtttggtttggctttcatcagtctgtgagacctgctatgtggaatatgatgctcaatattgacgtgtctgcaactgctttctaccgggctcagcctatcattgagttcatgtgtgaggttttagacattcagaacatcaatgaacagaccaaaccgctaacagattcccagcgtgtcaagtttaccaaagaaatcagaggtcttaaagttgaggtgacccactgtggacagatgaaacgaaaatatcgagtttgtaatgtgactagacggccagccagtcatcaaacttttcctttacagctagaaaatggtcaagctatggaatgtacagtagctcagtattttaagcagaagtatagtctgcagctgaaatacccccatcttccctgtctccaagtgggacaagaacaaaaacatacgtatttgccacttgaggtctgcaatatcgtggcaggacagcgatgtataaagaagctcacagacaatcagacttccacaatgatcaaagctacagcaagatcggctcccgacagacaggaagaaatcagtagactggtgaagagtaacagcatggtgggtggaccggatccctaccttaaagaatttggtattgttgtccacagtgaaatgacagagctcacaggcagggtacttccggcaccgatgctgcaatatggaggccggaataaaacggtagccacacccaaccagggtgtctgggacatgcgaggaaagcagttttatgctggcattgaaattaaagtttgggcagttgcttgttttgcgcctcagaaacaatgtagggaagatttactaaagagtttcactgatcagctccgtaaaatctctaaggatgcaggaatgcctatccagggtcaaccctgtttctgcaagtatgcacaaggtgcagacagcgtggagcccatgttcaaacacctgaaaatgacctacgtgggcctacagctgatcgtggttatcttgcctgggaagacaccagtgtatgcggaggtgaaacgtgttggagataccctcctgggtatggccacacagtgtgtccaggtaaaaaatgtagtgaagacctcaccccaaaccctttccaacctttgcctgaagataaatgcaaagctcggaggaattaacaacgtgcttgtacctcatcaaaggccctcggtgttccagcagcctgtcatcttcctgggagcggatgtcacgcaccccccagcaggggacgggaagaagccttccattgctgctgtcgttggcagtatggatggccaccccagtcggtactgtgccactgttcgggtgcagacctcccgccaggagatctcccaggagctcctgtacagtcaggaggtaattcaggacctcactaacatggttcgagagctgctgatccagttctacaaatctacacgcttcaaacccactcggatcatctactaccgtggaggggtatcggagggacaaatgaaacaggtcgcctggccagagctaatagcaattcgaaaggcatgtattagcttggaagaagattaccggccaggaataacctacattgtggtgcagaagagacaccacacacgacttttctgtgcagataaaacagaaagggtggggaaaagtggcaatgtcccagcgggaactacagtggatagtaccatcacgcatccatccgagtttgacttttacctctgtagtcatgcaggaattcagggaaccagccgtccttcacattaccaggtcttgtgggatgacaactgcttcaccgcagatgagctccagctcctaacttaccagctatgtcacacctacgtgcgctgcacgcgctcagtctccattccagcccctgcgtattatgcccggcttgtagctttcagggcaaggtatcatctggtggataaagatcatgacagcgcggaaggcagtcatgtgtcaggacagagcaatggccgggatcctcaggccttggccaaggctgtgcagatccaccatgatacccagcacacgatgtattttgcctgagagtctcagaaaaagaactcaaccaatttggcaccccatgcagcctcaaaacgtttcaaatgcctaccgcctctagagagagccaagttgacttcaggtggtcttctaccagcagctcggaatagttgcactgaatctatactttgcagcactgtctgatgcatcaacaaaattgagccattttttaaaagtaatagatactcatagattgtcttttctgatgcactggactgaatttttacctcatcatgcaaaggctgatcagcctgaacttccttaaggactttacaagaaaggtttctatggaatattttgctagctgtggtgttcaccgcatccctctagtcttataagagaagattattccttgttttctgtactcattgagtggggtgtatgcaaaagtgggagagaaaaaccaaacaatctacttcagttcagcgtaactttttaattatgtgggtccatagactttttaatggagatttctgacttcgccactgtaaatgcctttaacgagcattaatttttgaaagttttacagagctttattagttttcctactttatctccttgatctctacagacttgagctggtgcaagtacaggctgccaggcaattgcactgtatttggttgcaaattcagaccggcagttctctcatttggtcgactttcgtgaatgtgtagcagaaacagatataatgcatgtcacggtgacagataacactgccatggtaaaagtactcatgtttccccctctttgaaaaaaaaaactagcttttagtatttttcaaagttttcaaaagtgcccattttatgctgctctgtggtttgttagatctaaatgatttttaaactcttctcatagaaaattaactttggcaataagcatttttttaaggtcccctctcttcctcccccaacaatgtagttttctaggtgagatttcagtatgattttatcagctatttcttatagatcataatctggcaatttctgaaactggtcagaaaagacatatatttccatgactttaaagaattatttttatctgttttgtagtcacagctggtgtcctgtcactatgttttaaaataagctaggaccacgatgcttccttatcggatgggctttgccaatccttaaggtacattgagcgatgctgtgacctgcacaaatgtaccagcatttaaaactttttttcccaggaatcaaggttactcacacagtcatgtgcagtgcaaatttttttgcttctctttcaacctgaaatgtacttggtggggtttccttcctttcactaaactaaaactgcatagaaaaggttaatctttcttaatagattctagatcccactcgcaaggagacgggttcctttcttgtccaaacaaagggagctgatctaaagcaagcatcagtgaaaatgtagggaaaaaatgtattttgtatttagtgtagataacactttgtgaatggacaacagttacatagagtcttggtagttccagccagtgtttcccagcccagattttactgacttgtgattctctatcctggaacctcagaagtgagagctggagaaggggataaaagccccagagccacagtccgtatggctgaggaaagtgctggtggaagagacagacacaatgtgggaaaacgattttgccccttctgtctggaaactgctggtggggaaacactggatctgatggtgaagggtgtttgcttgaactcattagccggtccaaatctcttaaactagccttctcaaaatcccagcaatacaaagcactgtttttcttcagcctttcaaagaagcttgtaaataca
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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