2024-04-26 17:40:47, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_006675794 841 bp mRNA linear PLN 18-APR-2022 DEFINITION Batrachochytrium dendrobatidis JAM81 N-terminal protein methyltransferase (BATDEDRAFT_36418), mRNA. ACCESSION XM_006675794 VERSION XM_006675794.1 DBLINK BioProject: PRJNA225502 BioSample: SAMN02746048 KEYWORDS RefSeq. SOURCE Batrachochytrium dendrobatidis JAM81 ORGANISM Batrachochytrium dendrobatidis JAM81 Eukaryota; Fungi; Fungi incertae sedis; Chytridiomycota; Chytridiomycota incertae sedis; Chytridiomycetes; Rhizophydiales; Rhizophydiales incertae sedis; Batrachochytrium. REFERENCE 1 (bases 1 to 841) AUTHORS Kuo,A., Salamov,A., Schmutz,J., Lucas,S., Pitluck,S., Rosenblum,E., Stajich,J., Eisen,M. and Grigoriev,I.V. CONSRTM US DOE Joint Genome Institute (JGI-PGF) TITLE The draft genome of Batrachochytrium dendrobatidis JOURNAL Unpublished REFERENCE 2 (bases 1 to 841) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (15-APR-2022) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (bases 1 to 841) AUTHORS Kuo,A., Salamov,A., Schmutz,J., Lucas,S., Pitluck,S., Rosenblum,E., Stajich,J., Eisen,M. and Grigoriev,I.V. CONSRTM US DOE Joint Genome Institute (JGI-PGF) TITLE Direct Submission JOURNAL Submitted (01-DEC-2009) US DOE Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598-1698, USA COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. This record is derived from an annotated genomic sequence (NW_006281099). ##Metadata-START## Organism Display Name :: Batrachochytrium dendrobatidis JAM81 GOLD Stamp ID :: Gi01093 Diseases :: Chytridiomycosis Habitat :: Fresh water Phenotypes :: Chytrid, Non-filamentous, Pathogen ##Metadata-END## FEATURES Location/Qualifiers source 1..841 /organism="Batrachochytrium dendrobatidis JAM81" /mol_type="mRNA" /strain="JAM81" /db_xref="taxon:684364" /chromosome="Unknown" gene 1..841 /locus_tag="BATDEDRAFT_36418" /db_xref="GeneID:18241079" CDS 25..726 /locus_tag="BATDEDRAFT_36418" /note="similar to UPF0351 protein C9orf32 homolog; expressed hypothetical protein" /codon_start=1 /product="N-terminal protein methyltransferase" /protein_id="XP_006675857.1" /db_xref="GeneID:18241079" /db_xref="InterPro:IPR008576" /db_xref="JGIDB:Batde5_36418" /translation="
MIDTEEADVYINSRNEWYTDAASYWEQIEPTVQGMLGGFGFLTHIDAKGSSSFISEFVASDTDSPPRLDTKKACDCGAGIGRVSETFLLKTFDRVDLVEQNAQFLNTAKANFKENGLDNRVDAYIPLGLQEFSPEEGQYDLIWCQWVLGHLKDDDLVSFFQRCKKGLKPNGMIGVKENIAHQGILIDKEDSSMTRCEEILVEIMHRAGLTIVKQETQSGFPKELFAVKMFLLS"
misc_feature 64..720 /locus_tag="BATDEDRAFT_36418" /note="S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy); Region: AdoMet_MTases; cl17173" /db_xref="CDD:450167" misc_feature order(250..270,319..324,400..408,457..459) /locus_tag="BATDEDRAFT_36418" /note="S-adenosylmethionine binding site [chemical binding]; other site" /db_xref="CDD:100107" ORIGIN
ccttgattgctcactattactactatgattgatacagaggaggctgatgtgtacatcaacagtcgtaatgaatggtacactgatgctgccagctactgggaacagatcgaacctacagtccaaggcatgctgggaggatttggatttctgactcatattgatgcaaaaggatcatcttcgtttatttccgagtttgtcgcttcagacactgactctccaccaaggctcgataccaagaaagcatgtgactgtggtgctggcattggtcgagtatcagaaacgtttttattaaagacatttgacagagtagacttggtggagcaaaatgcacagtttttaaatacagccaaagccaattttaaagaaaatggtttggacaatcgtgtggatgcatatatccctttaggactgcaggaattttctccagaggaaggtcaatatgacctgatttggtgtcagtgggtacttggacatcttaaagatgatgatctagtaagtttttttcagcgatgcaaaaagggtctcaagccaaatggtatgattggtgttaaggaaaatattgcgcaccaaggcattctgattgacaaagaggacagcagtatgaccagatgtgaggagattcttgttgaaatcatgcatcgtgctggactcacgattgtcaagcaggaaacgcaatctggattcccaaaagaactgtttgctgttaaaatgtttctgctcagctaaacacgctattggatctcgtcaagtttgacttgagtttcttaccaccgtttgtccagtctaaatggtccggtggtatagcttagccagtagttttaaatgaaaatatactttagat
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@meso_cacase at
DBCLS
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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