2024-04-25 22:32:57, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_006119549 1529 bp mRNA linear VRT 04-JUN-2018 DEFINITION PREDICTED: Pelodiscus sinensis vimentin (VIM), partial mRNA. ACCESSION XM_006119549 VERSION XM_006119549.1 DBLINK BioProject: PRJNA221645 KEYWORDS RefSeq. SOURCE Pelodiscus sinensis (Chinese soft-shelled turtle) ORGANISM Pelodiscus sinensis Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Testudinata; Testudines; Cryptodira; Trionychia; Trionychidae; Pelodiscus. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_005854041.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Pelodiscus sinensis Annotation Release 102 Annotation Version :: 102 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.0 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## COMPLETENESS: incomplete on the 5' end. FEATURES Location/Qualifiers source 1..1529 /organism="Pelodiscus sinensis" /mol_type="mRNA" /isolate="Daiwa-1" /db_xref="taxon:13735" /chromosome="Unknown" /sex="female" /country="Japan: Saga" gene <1..1529 /gene="VIM" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 26 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 61 samples with support for all annotated introns" /db_xref="GeneID:102455714" CDS <1..1206 /gene="VIM" /codon_start=1 /product="vimentin" /protein_id="XP_006119611.1" /db_xref="GeneID:102455714" /translation="
APLRLRSSLPPSRLLHDTVDFSLADAINTEFKANRTNEKVELQELNDRFANYIDKVRFLEQQNKILLAELEQLKGKGTSRLGDLYEEEMRELRRQVDQLTNGKARVEVERDNLADDILRLREKLQDEMIQREEAENTLQSFRQDVDNASLARLDLERKVESLQEEIVFLKKLHDEEIRELQAQIQEQHIQIDVDVAKPDLTAALRDVRQQYESVASKNLQEAEEWYKSKFADLSEAATRNNDALRQAKQEANEYRRQIQSLTCEVDALKGSNESLERQMREMEDNFAVEAANYQDTITRLQEEIQNMKEEMARHLHEYQELLNVKMALDIEIATYRKLLEGEESRITMPIQTFSSLNLRETNIDSHPMVDTHSKRTLLIKTVETRDGQVINETSQHHDDLE"
misc_feature <10..108 /gene="VIM" /note="Intermediate filament head (DNA binding) region; Region: Filament_head; pfam04732" /db_xref="CDD:428095" misc_feature 109..1035 /gene="VIM" /note="Intermediate filament protein; Region: Filament; pfam00038" /db_xref="CDD:425436" ORIGIN
gcgcccctgcgcctgcggagcagcctgcccccctcgcggctcctgcacgacaccgtggacttctcgctggccgatgccatcaacacggagttcaaggccaaccgcaccaacgagaaggtggagctgcaggagctgaacgaccgcttcgccaactacatcgacaaggtgcgcttcctcgagcagcagaacaagatcctgctggccgagctggagcagctgaagggcaagggcacctcccgcctgggggacctctacgaggaggagatgcgggagctccgccggcaggtggaccagctcaccaacggcaaagccagggtggaggtggagagggacaacctggccgacgatatcctcaggctccgggagaagttgcaagatgagatgattcagcgagaagaagctgaaaacactctgcaatctttcagacaggatgttgacaatgcctctctggcacgtcttgatctcgagcgcaaagtagagtccttgcaagaagagattgtcttcttgaagaagcttcatgatgaggaaatccgggaactgcaggcccagattcaggagcaacacatccaaattgatgtggacgttgctaaaccagatctcactgctgccttgcgtgatgtccgtcagcagtatgaaagtgttgcttctaagaatcttcaggaagctgaagaatggtacaagtccaagttcgcagatctctctgaagctgctactaggaacaatgatgccctacgtcaggccaaacaggaggctaatgagtaccgcagacaaatacagtccctcacctgtgaagttgatgcacttaaaggaagtaatgagtccctggagcgccagatgcgtgaaatggaagacaactttgctgttgaagctgctaactaccaagacactattacccgtctgcaggaggaaatccaaaacatgaaggaagaaatggctcgccatcttcatgagtaccaagaactgctgaatgtgaagatggctcttgatattgagattgctacctatagaaaattgttggagggagaggagagcagaattaccatgcctattcaaactttctcttccctgaacctgagagaaaccaacattgattctcaccctatggttgatacccactcaaagaggacactcctaatcaagactgttgaaactagagatggacaggttatcaatgaaacttcccagcatcacgatgatctggagtgaaaaccctagagaaactgcacatttctcacttgtgcagggaaacaattcttaccagcaaaattcaagtgtccctgtcttaaaggaagaaacagcttaagtgcctttctgcagtttttccaaaagcgcaagattattatgctagagaataggtgttagatcttgcaaactgactctccctgaaggtttagcgtttacaatggagtctagtttacagatagcaatatcttgtgctgcaatactgtttgtttatgaattcagtaaaactgctttttccagcacaatatgaacaaactcaccgcttcaataaatatttggaaaatggc
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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