2024-04-26 22:33:58, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_005668107 2834 bp mRNA linear MAM 13-MAY-2017 DEFINITION PREDICTED: Sus scrofa vimentin (VIM), transcript variant X2, mRNA. ACCESSION XM_005668107 VERSION XM_005668107.3 DBLINK BioProject: PRJNA28993 KEYWORDS RefSeq. SOURCE Sus scrofa (pig) ORGANISM Sus scrofa Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_010452.4) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process On May 13, 2017 this sequence version replaced XM_005668107.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Sus scrofa Annotation Release 106 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2834 /organism="Sus scrofa" /mol_type="mRNA" /isolate="TJ Tabasco" /db_xref="taxon:9823" /chromosome="10" /sex="female" /breed="Duroc" gene 1..2834 /gene="VIM" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 1247 ESTs, 18 long SRA reads, 5 Proteins, and 98% coverage of the annotated genomic feature by RNAseq alignments, including 173 samples with support for all annotated introns" /db_xref="GeneID:100522394" CDS 1200..2483 /gene="VIM" /codon_start=1 /product="vimentin isoform X2" /protein_id="XP_005668164.1" /db_xref="GeneID:100522394" /translation="
MSTRTVSSSSYRRMFGGPGTASRPSSSRSYVTTSTRTYSLGSALRPSTSRSLYTSSPGGVYATRSSAVRLRSSVPGVRLLQDAVDFSLADAINTEFKNTRTNEKVELQELNDRFANYIDKVRFLEQQNKILLAELEQLKGQGKSRLGDLYEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEETLQREEAESTLQSFRQDVDNASLARLDLERKVESLQEEIAFLKKLHDEEIQELQAQIQEQHVQIDMDVSKPDLTAALRDVRQQYESVAAKNLQEAEEWYKSKFADLSEAANRNNDALRQAKQESNEYRRQVQSLTCEVDALKGTNESLERQMREMEENFAVEAANYQDTIGRLQDEIQNMKEEMARHLREYQDLLNVKMALDIEIATYRKLLEGEESRISLPLPNFSSLNLRGYQ"
misc_feature 1215..1502 /gene="VIM" /note="Intermediate filament head (DNA binding) region; Region: Filament_head; pfam04732" /db_xref="CDD:428095" misc_feature 1503..2429 /gene="VIM" /note="Intermediate filament protein; Region: Filament; pfam00038" /db_xref="CDD:425436" ORIGIN
ccggcgtttggcggttacagagcctccgcggaagtttcttactaaagagaagccagcatattggagcaaaatctggattgggcgcgttcctaagaatttaggagcgctctagactccaaaccagcgaacggcacataagaaagcagagcccagctcgaagttgggtaaaacttagaaccaacagtactcgcacagtggcccggggagacgaaagtcaatctcgtctaacggttttcctgaaccgctaggactcctcaacctcggtggcgggacagcagagcgcagtgactcactgccagtggtgactcagcgaccccacccatctcccctgggctttccttggccacttccttgcagctccttgtccaaagccgggcccagccggttaggtccctgaacaggaactcctactacaggaggacgaggaaagttggggccggattggtcccgctgtccaagcaggcgtgcgcaaggctgcgcagagcccagagccctgcgccccgggctgtgcgcgcccccacctcgcgctccaatctcaggccctctttgtttctttctccacgccttccgatctgctggatccctcactcctctcttccggctcctttacccgcggggcccccccaccctcgcgcttccaggcgaccgcagccaaggggccgcgcgcccctcccacccgcacgcttcctcctacgcctccctagctggctgggtgcccgggacccttgtggttcagtctagggagggctcccccatcaccgcgggacccagcctttttcatcacccagaggtgagcacacctcaggccatcctcaggaaagccccaaaagttccagttcagcctccaagttactgggggactgagcatagtcccggttgcggaggaggggggaggagggaggctcccgggctcccccgccccaaaccccaggccagccttcccgcctctcgccgggtccccattggctggcgcactccgccgccgggatggcagtgggagggaacgctccatcctaaggcggttataaaaactgcgccctcggcggggtcccgtcctctgccactcttgctccggggtccccgcgccagagacgcagcagcgctccctttgcccacacccaccgctccctcgctcgcctctcctcccggagccagtccgcgccaccgcagccgcccagcccactgccacctctgcagccatgtccaccaggaccgtgtcctcgtcctcctaccgcagaatgttcggcggccctggcaccgctagccggccgagctccagccggagctacgtgaccacgtccacccgtacctacagcctgggcagcgcgctgcgtcccagcaccagccgcagcctctacacctcgtccccgggcggcgtgtacgccacgcgctcctcggccgtgcgcctgcggagcagtgtgcccggcgtgcggctgctgcaggacgcggtggacttctcgctggccgacgccatcaacaccgagttcaagaacacccgcaccaacgagaaggtggagctgcaggagctgaatgaccgcttcgccaactacatcgacaaggtgcgcttcctggagcagcagaacaagattctgctagccgagctcgagcaactcaagggccagggcaagtcgcgcctgggggacctctacgaggaggagatgcgagagctgcgccggcaggtggaccagctcaccaacgacaaggcccgcgtcgaggtggagcgcgacaatctggccgaggacatcatgcggctgcgggagaagttgcaggaggagacgcttcagagggaggaagccgagagcactttgcagtctttcagacaggatgtcgacaatgcttctttggcacgtcttgacctggagcgcaaagtggaatccttgcaagaagagattgcctttttgaagaaactgcacgatgaggaaatccaggagctgcaggctcagatccaggaacagcacgtccaaatcgatatggatgtttccaagcctgacctcacggctgccctgcgtgatgtccgccagcagtatgagagcgtggccgccaagaaccttcaggaggcggaggagtggtacaagtccaagtttgccgacctctccgaggctgctaaccgcaacaacgatgccctgcgccaggccaagcaggagtcaaatgagtaccggagacaggtgcagtctctcacctgtgaagtggatgcgctcaaggggaccaacgagtctctggaacgccagatgcgggaaatggaagagaactttgccgtggaagctgctaactaccaagacactattggccgcctgcaggatgagattcagaacatgaaggaagagatggcccgtcaccttcgtgaataccaagacctgctgaatgtcaagatggctctcgacattgagattgccacctacaggaagctgctggaaggagaagagagcaggatttctctgcctcttccaaatttttcttccctgaacctgaggggttatcaatgaaacttcccagcatcacgatgatctggaataagaactgcatgtactctgtgcagcgaaatattaccagcaagaataaaaaagaaatccgtatcttcaagaaatagctttcaagtgcctttctgcagtttttcaggagcgcaagataggtttggaataggaataagctctagttcttaaaaaccaacactcgtaaaagatttaggaaaaaagtttacaacataatctagtttaccgaagaagccttgtgctagaatactttttaaaaagtatttttgaataccattaaaactgcttttttccatcaaatatctgaccaacttgtttctgcttcaataaatctttggaaaactc
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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